Wall clock time and date at job start Mon Mar 8 2021 09:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86298 * 109.47304 * 2 1 4 4 C 1.50696 * 109.47490 * 239.99525 * 2 1 3 5 5 C 1.33392 * 125.20280 * 300.33931 * 4 2 1 6 6 C 1.38422 * 114.91872 * 180.20508 * 5 4 2 7 7 S 1.76200 * 122.53898 * 179.76216 * 6 5 4 8 8 O 1.42102 * 106.40457 * 156.19877 * 7 6 5 9 9 O 1.42098 * 106.40260 * 23.27861 * 7 6 5 10 10 N 1.65601 * 107.21823 * 269.73943 * 7 6 5 11 11 C 1.46500 * 120.00250 * 64.99885 * 10 7 6 12 12 H 1.08998 * 109.46845 * 335.00670 * 11 10 7 13 13 C 1.53006 * 109.47249 * 94.99822 * 11 10 7 14 14 C 1.52997 * 109.47164 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46978 * 299.99874 * 14 13 11 16 16 H 1.08992 * 109.47056 * 300.00064 * 15 14 13 17 17 O 1.42903 * 109.46797 * 180.02562 * 15 14 13 18 18 C 1.52996 * 109.46891 * 60.00410 * 15 14 13 19 19 C 1.52997 * 109.47473 * 215.00121 * 11 10 7 20 20 C 1.33390 * 114.92212 * 359.49780 * 6 5 4 21 21 S 1.75883 * 125.20271 * 120.02986 * 4 2 1 22 22 H 0.96698 * 113.99965 * 300.00946 * 1 2 3 23 23 H 1.09008 * 109.46228 * 119.99653 * 2 1 3 24 24 H 1.48500 * 109.99933 * 178.67553 * 3 2 1 25 25 H 1.48496 * 109.99826 * 299.99272 * 3 2 1 26 26 H 1.07997 * 122.54234 * 359.97160 * 5 4 2 27 27 H 0.97002 * 120.00463 * 244.99575 * 10 7 6 28 28 H 1.09001 * 109.47002 * 60.00085 * 13 11 10 29 29 H 1.09000 * 109.47050 * 300.00351 * 13 11 10 30 30 H 1.09002 * 109.47045 * 180.02562 * 14 13 11 31 31 H 1.09001 * 109.47375 * 59.99966 * 14 13 11 32 32 H 0.96699 * 114.00345 * 60.00309 * 17 15 14 33 33 H 1.09004 * 109.47368 * 179.97438 * 18 15 14 34 34 H 1.09001 * 109.47372 * 59.99964 * 18 15 14 35 35 H 1.09002 * 109.47153 * 59.99757 * 19 11 10 36 36 H 1.09001 * 109.46832 * 299.99948 * 19 11 10 37 37 H 1.07998 * 125.20280 * 180.28629 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2303 5 6 1.6687 -1.9794 -1.5467 6 6 2.2442 -2.4174 -2.7270 7 16 2.0337 -4.0588 -3.3320 8 8 2.2483 -3.9998 -4.7355 9 8 0.8347 -4.5506 -2.7492 10 7 3.2659 -4.9728 -2.7086 11 6 3.3513 -5.1993 -1.2637 12 1 2.8473 -4.3881 -0.7384 13 6 2.6781 -6.5284 -0.9151 14 6 2.7668 -6.7646 0.5939 15 6 4.2363 -6.8107 1.0174 16 1 4.7403 -7.6220 0.4924 17 8 4.3190 -7.0320 2.4268 18 6 4.9094 -5.4817 0.6689 19 6 4.8209 -5.2456 -0.8407 20 6 2.9655 -1.5010 -3.3745 21 16 2.9476 0.0089 -2.4727 22 1 -0.3933 0.4418 0.7650 23 1 1.7922 -0.5138 0.8901 24 1 3.5347 1.7702 0.0323 25 1 1.5617 2.4678 -1.2086 26 1 1.0567 -2.6179 -0.9269 27 1 3.9311 -5.3583 -3.3000 28 1 3.1820 -7.3397 -1.4405 29 1 1.6311 -6.4953 -1.2165 30 1 2.2876 -7.7116 0.8422 31 1 2.2626 -5.9532 1.1190 32 1 3.9116 -7.8585 2.7198 33 1 5.9562 -5.5143 0.9710 34 1 4.4052 -4.6704 1.1939 35 1 5.3005 -4.2988 -1.0890 36 1 5.3248 -6.0569 -1.3660 37 1 3.4813 -1.6616 -4.3097 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_11353602_15065232.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:49:49 Heat of formation + Delta-G solvation = -130.393386 kcal Electronic energy + Delta-G solvation = -23616.135780 eV Core-core repulsion = 19999.229177 eV Total energy + Delta-G solvation = -3616.906603 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.063 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.22624 -39.49489 -38.47405 -37.57773 -37.29968 -37.10514 -34.19761 -32.06364 -31.82517 -28.89236 -27.30338 -24.98434 -23.79247 -23.16017 -21.36181 -21.12351 -20.19331 -19.16601 -18.58867 -18.44441 -18.17357 -18.01098 -17.41603 -16.47257 -16.22764 -15.73505 -15.49015 -15.47505 -15.00934 -14.56759 -14.43443 -14.32303 -14.25452 -14.16398 -13.78885 -13.43007 -13.32881 -13.23097 -13.17139 -13.04747 -12.94371 -12.68105 -12.28231 -12.23574 -12.14253 -11.95969 -11.69993 -11.35255 -10.79414 -10.64012 -10.47068 -10.21611 -9.97968 -5.27408 -0.89105 -0.61289 0.21018 0.46397 0.84570 1.14522 1.51390 1.82231 1.94671 2.57280 3.09438 3.27989 3.36852 3.57829 3.67133 3.71745 3.82848 3.99980 4.02065 4.09967 4.18323 4.23589 4.35520 4.37200 4.46954 4.48646 4.53840 4.76367 4.77516 4.92949 4.94034 5.05834 5.10532 5.15233 5.17455 5.31597 5.42410 5.99440 6.79826 6.89054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.046 4.046 3 Si 0.755 3.245 4 C -0.195 4.195 5 C -0.053 4.053 6 C -0.692 4.692 7 S 2.726 3.274 8 O -0.983 6.983 9 O -0.976 6.976 10 N -1.096 6.096 11 C 0.148 3.852 12 H 0.087 0.913 13 C -0.138 4.138 14 C -0.147 4.147 15 C 0.101 3.899 16 H 0.065 0.935 17 O -0.589 6.589 18 C -0.113 4.113 19 C -0.116 4.116 20 C -0.077 4.077 21 S 0.125 5.875 22 H 0.407 0.593 23 H 0.113 0.887 24 H -0.263 1.263 25 H -0.282 1.282 26 H 0.161 0.839 27 H 0.431 0.569 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.393 0.607 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.554 0.866 5.432 6.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.158 4.158 3 Si 0.658 3.342 4 C -0.312 4.312 5 C -0.082 4.082 6 C -0.792 4.792 7 S 2.813 3.187 8 O -0.974 6.974 9 O -0.966 6.966 10 N -0.859 5.859 11 C 0.041 3.959 12 H 0.105 0.895 13 C -0.178 4.178 14 C -0.185 4.185 15 C 0.042 3.958 16 H 0.083 0.917 17 O -0.397 6.397 18 C -0.152 4.152 19 C -0.155 4.155 20 C -0.215 4.215 21 S 0.388 5.612 22 H 0.259 0.741 23 H 0.130 0.870 24 H -0.188 1.188 25 H -0.208 1.208 26 H 0.178 0.822 27 H 0.269 0.731 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.243 0.757 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 4.264 2.981 3.795 6.440 hybrid contribution -0.503 -1.863 -0.020 1.930 sum 3.760 1.118 3.775 5.444 Atomic orbital electron populations 1.86473 1.16728 1.82459 1.51647 1.24215 0.86187 1.10396 0.94971 0.93773 0.79051 0.75619 0.85797 1.24095 1.07248 0.97740 1.02117 1.19731 0.98129 0.95574 0.94775 1.30006 1.14680 1.25872 1.08596 1.00908 0.73067 0.72684 0.72003 1.93571 1.86044 1.87300 1.30450 1.93572 1.45200 1.78689 1.79092 1.55326 1.47941 1.66672 1.15934 1.20996 0.98295 0.98318 0.78244 0.89506 1.22045 1.01823 0.97737 0.96179 1.22212 0.97340 1.03326 0.95639 1.21917 0.94730 0.97887 0.81225 0.91674 1.86475 1.82729 1.46969 1.23551 1.21468 1.01617 0.96532 0.95557 1.21776 0.94288 1.04305 0.95084 1.26201 0.97895 0.95053 1.02400 1.84545 1.47492 1.14420 1.14773 0.74051 0.86980 1.18818 1.20793 0.82168 0.73095 0.89868 0.91348 0.90281 0.91468 0.75698 0.90723 0.91478 0.89630 0.89405 0.77639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.40 12.83 -148.98 -1.91 -1.51 16 2 C -0.05 0.08 2.95 71.23 0.21 0.29 16 3 Si 0.75 -2.44 30.97 68.60 2.12 -0.32 16 4 C -0.19 -0.73 5.76 24.59 0.14 -0.59 16 5 C -0.05 -0.24 9.12 21.22 0.19 -0.04 16 6 C -0.69 -2.51 5.72 21.22 0.12 -2.39 16 7 S 2.73 11.33 5.71 -56.49 -0.32 11.01 16 8 O -0.98 -9.20 17.64 -128.00 -2.26 -11.46 16 9 O -0.98 -10.02 16.89 -128.00 -2.16 -12.18 16 10 N -1.10 3.42 5.47 -169.38 -0.93 2.49 16 11 C 0.15 -0.52 2.65 44.99 0.12 -0.40 16 12 H 0.09 -0.29 7.41 -2.39 -0.02 -0.31 16 13 C -0.14 0.34 5.53 30.60 0.17 0.51 16 14 C -0.15 0.48 5.54 30.59 0.17 0.65 16 15 C 0.10 -0.30 3.47 30.59 0.11 -0.20 16 16 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 17 O -0.59 0.10 13.32 -148.98 -1.98 -1.88 16 18 C -0.11 0.39 5.58 30.61 0.17 0.56 16 19 C -0.12 0.72 5.45 30.61 0.17 0.89 16 20 C -0.08 -0.15 10.70 66.72 0.71 0.57 16 21 S 0.12 0.40 20.58 -56.49 -1.16 -0.76 16 22 H 0.41 -4.75 8.74 -74.06 -0.65 -5.40 16 23 H 0.11 -0.77 7.96 -2.38 -0.02 -0.79 16 24 H -0.26 -0.18 7.11 99.48 0.71 0.52 16 25 H -0.28 -1.24 7.11 99.48 0.71 -0.53 16 26 H 0.16 0.53 7.96 -2.91 -0.02 0.51 16 27 H 0.43 -3.26 8.84 -96.74 -0.85 -4.11 16 28 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 29 H 0.07 0.09 7.64 -2.39 -0.02 0.07 16 30 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 31 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 32 H 0.39 -2.95 9.08 -74.06 -0.67 -3.63 16 33 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 34 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 35 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 36 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 37 H 0.21 -0.62 8.00 -2.91 -0.02 -0.64 16 Total: 0.00 -24.78 330.87 -7.34 -32.11 By element: Atomic # 1 Polarization: -16.33 SS G_CDS: -1.02 Total: -17.34 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 2.28 Total: -0.16 kcal Atomic # 7 Polarization: 3.42 SS G_CDS: -0.93 Total: 2.49 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -8.32 Total: -27.03 kcal Atomic # 14 Polarization: -2.44 SS G_CDS: 2.12 Total: -0.32 kcal Atomic # 16 Polarization: 11.73 SS G_CDS: -1.48 Total: 10.25 kcal Total: -24.78 -7.34 -32.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_11353602_15065232.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.279 kcal (2) G-P(sol) polarization free energy of solvation -24.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds