Wall clock time and date at job start Mon Mar 8 2021 08:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47261 * 2 1 4 4 C 1.53000 * 109.46782 * 239.99447 * 2 1 3 5 5 O 1.42903 * 109.46639 * 119.99623 * 2 1 3 6 6 C 1.42900 * 113.99872 * 60.00236 * 5 2 1 7 7 H 1.09001 * 112.85363 * 341.18832 * 6 5 2 8 8 C 1.53786 * 113.69454 * 112.46078 * 6 5 2 9 9 C 1.53779 * 87.08013 * 139.98903 * 8 6 5 10 10 H 1.09005 * 113.69017 * 89.13314 * 9 8 6 11 11 N 1.46501 * 113.61181 * 220.01859 * 9 8 6 12 12 S 1.65608 * 120.00079 * 242.49831 * 11 9 8 13 13 O 1.42099 * 106.40241 * 178.54028 * 12 11 9 14 14 O 1.42097 * 106.39895 * 311.46103 * 12 11 9 15 15 C 1.76196 * 107.21621 * 65.00284 * 12 11 9 16 16 C 1.38236 * 119.99813 * 269.72930 * 15 12 11 17 17 C 1.38246 * 119.99772 * 179.74644 * 16 15 12 18 18 C 1.38231 * 119.99722 * 0.54629 * 17 16 15 19 19 C 1.50703 * 119.99460 * 179.72488 * 18 17 16 20 20 O 1.42910 * 109.46855 * 119.98041 * 19 18 17 21 21 Si 1.86295 * 109.47425 * 359.97438 * 19 18 17 22 22 C 1.38228 * 120.00276 * 359.70497 * 18 17 16 23 23 C 1.38231 * 120.00187 * 0.02562 * 22 18 17 24 24 C 1.53782 * 87.08419 * 334.56787 * 9 8 6 25 25 H 1.09008 * 109.47291 * 300.00540 * 1 2 3 26 26 H 1.09000 * 109.46906 * 59.99926 * 1 2 3 27 27 H 1.09001 * 109.47326 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47082 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47221 * 299.99881 * 3 2 1 30 30 H 1.08999 * 109.47606 * 59.99430 * 3 2 1 31 31 H 1.09001 * 109.47438 * 300.00235 * 4 2 1 32 32 H 1.09000 * 109.46889 * 60.00616 * 4 2 1 33 33 H 1.09002 * 109.46722 * 180.02562 * 4 2 1 34 34 H 1.09004 * 113.60832 * 25.43990 * 8 6 5 35 35 H 1.09001 * 113.61131 * 254.54079 * 8 6 5 36 36 H 0.97002 * 120.00027 * 62.50341 * 11 9 8 37 37 H 1.08001 * 120.00234 * 359.97438 * 16 15 12 38 38 H 1.08005 * 119.99835 * 180.27219 * 17 16 15 39 39 H 1.08994 * 109.46818 * 239.97491 * 19 18 17 40 40 H 0.96694 * 113.99463 * 179.97438 * 20 19 18 41 41 H 1.48495 * 109.99943 * 298.67936 * 21 19 18 42 42 H 1.48500 * 110.00142 * 59.99934 * 21 19 18 43 43 H 1.08003 * 120.00266 * 180.02562 * 22 18 17 44 44 H 1.07996 * 120.00346 * 179.97438 * 23 22 18 45 45 H 1.08998 * 113.61308 * 139.97939 * 24 9 8 46 46 H 1.08995 * 113.61309 * 270.80041 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2492 5 8 2.0063 -0.6736 1.1669 6 6 1.5846 -2.0355 1.2646 7 1 0.7234 -2.2582 0.6346 8 6 2.7318 -3.0495 1.1208 9 6 2.0539 -3.8564 2.2407 10 1 1.3210 -4.5776 1.8788 11 7 2.9974 -4.4367 3.1994 12 16 3.1020 -6.0810 3.3667 13 8 4.1156 -6.3224 4.3329 14 8 1.7697 -6.5560 3.5025 15 6 3.7061 -6.7229 1.8410 16 6 2.8192 -7.0919 0.8469 17 6 3.2934 -7.5907 -0.3521 18 6 4.6538 -7.7310 -0.5525 19 6 5.1704 -8.2805 -1.8573 20 8 6.0127 -7.3101 -2.4827 21 14 3.7348 -8.6716 -2.9783 22 6 5.5405 -7.3669 0.4435 23 6 5.0666 -6.8630 1.6403 24 6 1.4331 -2.5310 2.7125 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6766 -1.7490 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7218 -1.2490 34 1 3.7063 -2.6486 1.3999 35 1 2.7434 -3.5620 0.1589 36 1 3.5609 -3.8578 3.7364 37 1 1.7561 -6.9871 1.0055 38 1 2.6006 -7.8748 -1.1304 39 1 5.7416 -9.1893 -1.6679 40 1 6.3819 -7.5970 -3.3291 41 1 2.8685 -9.7030 -2.3532 42 1 2.9479 -7.4406 -3.2441 43 1 6.6034 -7.4762 0.2867 44 1 5.7593 -6.5789 2.4186 45 1 0.3963 -2.6250 3.0356 46 1 2.0518 -1.9892 3.4278 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_11572884_13421422.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:13:10 Heat of formation + Delta-G solvation = -97.179681 kcal Electronic energy + Delta-G solvation = -28733.437630 eV Core-core repulsion = 24717.743797 eV Total energy + Delta-G solvation = -4015.693834 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.138 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.97185 -40.74546 -38.75378 -38.41265 -37.68394 -37.14348 -34.59258 -33.27025 -33.07229 -32.36476 -28.44131 -28.36458 -27.29012 -26.65319 -25.03591 -24.25698 -22.91292 -21.32928 -21.12650 -20.52065 -19.37070 -18.57277 -18.47802 -17.97448 -17.37622 -17.10063 -16.87008 -16.28562 -16.10785 -15.95863 -15.79686 -15.33355 -15.22567 -14.80721 -14.59522 -14.40981 -14.26992 -14.07011 -13.96623 -13.73479 -13.54448 -13.41693 -13.33860 -13.28225 -13.20419 -12.90673 -12.86418 -12.74620 -12.68820 -12.47295 -12.33378 -12.24891 -11.96744 -11.83756 -11.78352 -11.29377 -10.75305 -10.52451 -10.38121 -10.33000 -10.22545 -4.99756 -0.86256 -0.50777 0.02214 1.20767 1.58961 1.75697 1.89544 2.17478 2.57665 2.74073 3.07998 3.19913 3.41883 3.48308 3.54395 3.59197 3.73493 3.78277 3.82338 3.88735 3.95803 4.01451 4.05912 4.11558 4.18275 4.27818 4.33671 4.49635 4.60803 4.65481 4.67428 4.70123 4.75917 4.76912 4.77625 4.83878 4.84250 4.90641 4.91477 4.98680 5.02534 5.10662 5.13583 5.29189 5.31771 5.37563 5.54673 5.91431 6.39068 6.81524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.099 3.901 3 C -0.140 4.140 4 C -0.174 4.174 5 O -0.376 6.376 6 C 0.059 3.941 7 H 0.106 0.894 8 C -0.165 4.165 9 C 0.122 3.878 10 H 0.128 0.872 11 N -1.090 6.090 12 S 2.712 3.288 13 O -0.983 6.983 14 O -0.981 6.981 15 C -0.678 4.678 16 C -0.022 4.022 17 C -0.161 4.161 18 C -0.031 4.031 19 C -0.088 4.088 20 O -0.560 6.560 21 Si 0.773 3.227 22 C -0.118 4.118 23 C -0.022 4.022 24 C -0.138 4.138 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.430 0.570 37 H 0.156 0.844 38 H 0.132 0.868 39 H 0.103 0.897 40 H 0.407 0.593 41 H -0.287 1.287 42 H -0.290 1.290 43 H 0.153 0.847 44 H 0.156 0.844 45 H 0.089 0.911 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.026 0.565 -8.039 8.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.060 3.940 3 C -0.197 4.197 4 C -0.232 4.232 5 O -0.296 6.296 6 C 0.001 3.999 7 H 0.123 0.877 8 C -0.205 4.205 9 C 0.014 3.986 10 H 0.146 0.854 11 N -0.851 5.851 12 S 2.803 3.197 13 O -0.973 6.973 14 O -0.970 6.970 15 C -0.766 4.766 16 C -0.041 4.041 17 C -0.179 4.179 18 C -0.032 4.032 19 C -0.198 4.198 20 O -0.370 6.370 21 Si 0.678 3.322 22 C -0.136 4.136 23 C -0.041 4.041 24 C -0.177 4.177 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.268 0.732 37 H 0.174 0.826 38 H 0.149 0.851 39 H 0.121 0.879 40 H 0.259 0.741 41 H -0.214 1.214 42 H -0.217 1.217 43 H 0.171 0.829 44 H 0.173 0.827 45 H 0.108 0.892 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.187 0.376 -6.822 6.835 hybrid contribution 0.549 0.191 -0.010 0.581 sum 0.361 0.567 -6.833 6.866 Atomic orbital electron populations 1.22465 0.94927 1.02878 1.03272 1.21666 0.93703 0.93279 0.85314 1.21793 1.01621 0.93280 1.03006 1.22451 1.01789 1.00976 0.97952 1.88018 1.74176 1.23833 1.43558 1.23512 0.97227 0.81548 0.97627 0.87671 1.24046 1.00163 0.97099 0.99191 1.22208 0.91394 0.95405 0.89551 0.85441 1.55209 1.52100 1.24710 1.53045 1.01154 0.72787 0.72695 0.73043 1.93573 1.60364 1.84621 1.58787 1.93571 1.37656 1.80073 1.85738 1.30886 1.03231 1.19594 1.22842 1.21044 1.00269 0.91723 0.91032 1.21190 0.95306 1.02932 0.98479 1.20136 0.93306 0.94237 0.95507 1.24947 1.04801 0.94686 0.95371 1.86427 1.67051 1.42180 1.41344 0.94179 0.75221 0.77710 0.85088 1.21394 1.01300 0.98619 0.92331 1.21241 0.93400 0.92043 0.97449 1.23609 1.02896 0.94192 0.97044 0.92112 0.90491 0.91676 0.92411 0.89811 0.92249 0.92043 0.90639 0.92480 0.88858 0.90442 0.73250 0.82639 0.85119 0.87904 0.74111 1.21412 1.21743 0.82931 0.82664 0.89195 0.88418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.42 8.38 71.98 0.60 1.02 16 2 C 0.10 -0.03 1.11 -10.79 -0.01 -0.05 16 3 C -0.14 0.11 8.84 71.98 0.64 0.74 16 4 C -0.17 0.30 8.38 71.98 0.60 0.90 16 5 O -0.38 -0.96 10.00 -148.98 -1.49 -2.45 16 6 C 0.06 -0.08 2.81 31.12 0.09 0.01 16 7 H 0.11 -0.40 5.54 -2.39 -0.01 -0.42 16 8 C -0.17 0.30 7.71 31.12 0.24 0.54 16 9 C 0.12 -0.25 4.42 45.52 0.20 -0.05 16 10 H 0.13 -0.50 7.77 -2.38 -0.02 -0.52 16 11 N -1.09 1.04 5.79 -167.19 -0.97 0.07 16 12 S 2.71 12.82 5.71 -56.49 -0.32 12.50 16 13 O -0.98 -10.14 17.28 -128.00 -2.21 -12.35 16 14 O -0.98 -9.74 16.80 -128.00 -2.15 -11.89 16 15 C -0.68 -2.61 5.95 22.27 0.13 -2.48 16 16 C -0.02 -0.07 9.52 22.27 0.21 0.14 16 17 C -0.16 -0.58 8.67 22.27 0.19 -0.39 16 18 C -0.03 -0.09 5.42 -19.87 -0.11 -0.19 16 19 C -0.09 0.27 2.81 71.24 0.20 0.47 16 20 O -0.56 1.82 12.74 -148.98 -1.90 -0.08 16 21 Si 0.77 -3.27 29.79 68.60 2.04 -1.23 16 22 C -0.12 -0.28 9.61 22.27 0.21 -0.07 16 23 C -0.02 -0.07 9.52 22.27 0.21 0.14 16 24 C -0.14 0.28 7.70 31.12 0.24 0.52 16 25 H 0.06 -0.06 8.14 -2.38 -0.02 -0.08 16 26 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 27 H 0.06 -0.23 6.24 -2.39 -0.01 -0.24 16 28 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 29 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 30 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.06 -0.14 7.02 -2.39 -0.02 -0.16 16 32 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 33 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 34 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 35 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 36 H 0.43 -1.73 8.94 -96.74 -0.87 -2.60 16 37 H 0.16 -0.02 7.61 -2.91 -0.02 -0.04 16 38 H 0.13 0.25 4.88 -2.91 -0.01 0.24 16 39 H 0.10 -0.73 7.96 -2.39 -0.02 -0.75 16 40 H 0.41 -5.53 8.74 -74.06 -0.65 -6.18 16 41 H -0.29 -0.41 7.11 99.48 0.71 0.29 16 42 H -0.29 -0.75 7.11 99.48 0.71 -0.05 16 43 H 0.15 -0.17 8.06 -2.91 -0.02 -0.19 16 44 H 0.16 0.03 7.62 -2.91 -0.02 0.01 16 45 H 0.09 -0.30 8.14 -2.39 -0.02 -0.32 16 46 H 0.10 -0.14 8.14 -2.39 -0.02 -0.16 16 Total: 0.00 -22.74 383.16 -3.82 -26.55 By element: Atomic # 1 Polarization: -11.90 SS G_CDS: -0.48 Total: -12.38 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: 3.66 Total: 1.25 kcal Atomic # 7 Polarization: 1.04 SS G_CDS: -0.97 Total: 0.07 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -7.75 Total: -26.77 kcal Atomic # 14 Polarization: -3.27 SS G_CDS: 2.04 Total: -1.23 kcal Atomic # 16 Polarization: 12.82 SS G_CDS: -0.32 Total: 12.50 kcal Total: -22.74 -3.82 -26.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_11572884_13421422.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.625 kcal (2) G-P(sol) polarization free energy of solvation -22.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds