Wall clock time and date at job start Mon Mar 8 2021 08:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 O 1.42895 * 109.47036 * 240.00558 * 2 1 3 6 6 C 1.42903 * 114.00578 * 59.99501 * 5 2 1 7 7 H 1.09004 * 112.84303 * 18.80372 * 6 5 2 8 8 C 1.53781 * 113.61844 * 149.99662 * 6 5 2 9 9 C 1.53780 * 87.07949 * 139.98357 * 8 6 5 10 10 H 1.08998 * 113.61265 * 89.20453 * 9 8 6 11 11 N 1.46502 * 113.61239 * 220.01871 * 9 8 6 12 12 S 1.65601 * 119.99804 * 215.00315 * 11 9 8 13 13 O 1.42104 * 106.39878 * 178.54416 * 12 11 9 14 14 O 1.42104 * 106.40252 * 311.45932 * 12 11 9 15 15 C 1.76197 * 107.21884 * 65.00193 * 12 11 9 16 16 C 1.33391 * 125.20127 * 89.99762 * 15 12 11 17 17 C 1.50701 * 122.54020 * 359.95874 * 16 15 12 18 18 O 1.42896 * 109.47047 * 285.00047 * 17 16 15 19 19 Si 1.86302 * 109.47240 * 164.99579 * 17 16 15 20 20 C 1.38420 * 114.91944 * 179.97438 * 16 15 12 21 21 C 1.33382 * 114.92240 * 0.02562 * 20 16 15 22 22 S 1.75875 * 125.20381 * 269.69466 * 15 12 11 23 23 C 1.53775 * 113.61685 * 247.49943 * 6 5 2 24 24 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 27 27 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 28 28 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 30 30 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 31 31 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 32 32 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 33 33 H 1.08998 * 113.61568 * 254.53931 * 8 6 5 34 34 H 1.09006 * 113.61008 * 25.43897 * 8 6 5 35 35 H 0.96994 * 120.00156 * 35.00840 * 11 9 8 36 36 H 1.09001 * 109.47256 * 44.99869 * 17 16 15 37 37 H 0.96705 * 113.99628 * 180.02562 * 18 17 16 38 38 H 1.48497 * 109.99945 * 298.68382 * 19 17 16 39 39 H 1.48504 * 109.99682 * 59.99908 * 19 17 16 40 40 H 1.08008 * 122.53533 * 180.02562 * 20 16 15 41 41 H 1.08005 * 125.20461 * 180.02562 * 21 20 16 42 42 H 1.08999 * 113.61580 * 334.56293 * 23 6 5 43 43 H 1.09001 * 113.61422 * 105.47176 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 2.0064 -0.6735 -1.1668 6 6 1.5847 -0.0772 -2.3951 7 1 1.2522 0.9537 -2.2729 8 6 2.5837 -0.2696 -3.5483 9 6 1.3667 -0.5002 -4.4596 10 1 0.9744 0.4146 -4.9040 11 7 1.5626 -1.5705 -5.4406 12 16 0.8886 -1.4454 -6.9481 13 8 1.2845 -2.6084 -7.6623 14 8 -0.4703 -1.0795 -6.7510 15 6 1.6597 -0.0807 -7.7527 16 6 2.7615 -0.1519 -8.5012 17 6 3.4914 -1.4470 -8.7483 18 8 4.2191 -1.8150 -7.5749 19 14 4.6748 -1.2313 -10.1709 20 6 3.1839 1.0541 -9.0335 21 6 2.4254 2.1046 -8.7169 22 16 1.0903 1.5824 -7.6979 23 6 0.6077 -0.9502 -3.2002 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 -1.7490 1.2492 31 1 3.1301 -0.7209 1.2493 32 1 1.6767 -0.2075 2.1392 33 1 3.1477 0.6306 -3.7922 34 1 3.2171 -1.1495 -3.4349 35 1 2.0869 -2.3523 -5.2072 36 1 2.7718 -2.2292 -8.9898 37 1 4.7145 -2.6409 -7.6622 38 1 3.9271 -0.8795 -11.4047 39 1 5.6612 -0.1673 -9.8541 40 1 4.0611 1.1380 -9.6580 41 1 2.6012 3.1198 -9.0410 42 1 0.7009 -2.0160 -2.9917 43 1 -0.4236 -0.5992 -3.1633 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_11572884_13652106.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:13:17 Heat of formation + Delta-G solvation = -82.299862 kcal Electronic energy + Delta-G solvation = -27658.436259 eV Core-core repulsion = 23732.539910 eV Total energy + Delta-G solvation = -3925.896350 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.094 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -40.94890 -40.01932 -38.67982 -38.08374 -37.13661 -36.83856 -34.54567 -33.01336 -31.54566 -28.47058 -28.39800 -28.02788 -26.65374 -25.00322 -24.21590 -21.74610 -21.26519 -20.80587 -19.99880 -19.32830 -18.51810 -18.40882 -17.93732 -17.32505 -17.09262 -16.35030 -16.17410 -15.96000 -15.72679 -15.49406 -15.18413 -14.68703 -14.57976 -14.41456 -14.29226 -14.26051 -13.76517 -13.63302 -13.50852 -13.29911 -13.20609 -13.13432 -13.03259 -12.88712 -12.78063 -12.70573 -12.59936 -12.50109 -12.35311 -12.24527 -11.86811 -11.83562 -11.74095 -11.30662 -10.59966 -10.44386 -10.33658 -10.29119 -9.70861 -5.05659 -0.82900 -0.53572 0.24531 0.56740 1.12484 1.20151 1.58950 1.87438 1.94492 2.67293 2.73839 3.20299 3.42990 3.46490 3.54421 3.70499 3.77169 3.79165 3.86065 3.89910 3.93951 3.99284 4.03876 4.08674 4.33916 4.41729 4.54617 4.61260 4.62482 4.69491 4.74343 4.78038 4.80931 4.87504 4.88224 4.89547 4.97174 4.98652 5.03364 5.09968 5.27899 5.29461 5.36531 5.94119 6.38848 6.53263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.104 3.896 3 C -0.180 4.180 4 C -0.139 4.139 5 O -0.358 6.358 6 C 0.061 3.939 7 H 0.095 0.905 8 C -0.138 4.138 9 C 0.129 3.871 10 H 0.109 0.891 11 N -1.088 6.088 12 S 2.719 3.281 13 O -0.945 6.945 14 O -0.950 6.950 15 C -0.779 4.779 16 C 0.058 3.942 17 C -0.099 4.099 18 O -0.541 6.541 19 Si 0.697 3.303 20 C -0.169 4.169 21 C -0.162 4.162 22 S 0.226 5.774 23 C -0.164 4.164 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.424 0.576 36 H 0.115 0.885 37 H 0.389 0.611 38 H -0.253 1.253 39 H -0.249 1.249 40 H 0.149 0.851 41 H 0.179 0.821 42 H 0.100 0.900 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.274 1.601 1.320 3.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.065 3.935 3 C -0.237 4.237 4 C -0.196 4.196 5 O -0.277 6.277 6 C 0.002 3.998 7 H 0.112 0.888 8 C -0.178 4.178 9 C 0.021 3.979 10 H 0.127 0.873 11 N -0.848 5.848 12 S 2.804 3.196 13 O -0.936 6.936 14 O -0.940 6.940 15 C -0.979 4.979 16 C 0.041 3.959 17 C -0.211 4.211 18 O -0.348 6.348 19 Si 0.598 3.402 20 C -0.199 4.199 21 C -0.300 4.300 22 S 0.492 5.508 23 C -0.204 4.204 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.120 0.880 35 H 0.261 0.739 36 H 0.132 0.868 37 H 0.237 0.763 38 H -0.177 1.177 39 H -0.174 1.174 40 H 0.166 0.834 41 H 0.197 0.803 42 H 0.118 0.882 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.431 2.976 1.221 3.521 hybrid contribution 1.294 0.180 -0.515 1.404 sum 2.725 3.156 0.706 4.229 Atomic orbital electron populations 1.22483 0.95405 1.03025 1.02573 1.21550 0.93291 0.92064 0.86548 1.22476 1.02337 0.96301 1.02580 1.21767 1.01998 1.00941 0.94896 1.88038 1.73701 1.53360 1.12579 1.23429 0.95709 0.96986 0.83653 0.88779 1.23627 0.96912 1.03860 0.93367 1.21961 0.98082 0.89829 0.88048 0.87328 1.55316 1.70899 1.29843 1.28726 1.01294 0.73223 0.72726 0.72328 1.93539 1.83271 1.45428 1.71317 1.93633 1.30853 1.84202 1.85317 1.35794 1.16399 1.21047 1.24677 1.18078 0.91320 0.94816 0.91685 1.25002 1.02163 0.95723 0.98255 1.86387 1.66788 1.46373 1.35239 0.94826 0.81632 0.87740 0.76052 1.20258 1.02941 0.91700 1.05022 1.26195 0.98239 1.03672 1.01877 1.84255 1.24704 0.95198 1.46595 1.24044 0.99544 1.02462 0.94372 0.92204 0.91583 0.91522 0.91343 0.91594 0.92206 0.91718 0.91764 0.91074 0.90289 0.88037 0.73941 0.86750 0.76269 1.17693 1.17373 0.83398 0.80326 0.88185 0.90259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.12 8.38 37.16 0.31 0.43 16 2 C 0.10 -0.01 1.11 -90.62 -0.10 -0.11 16 3 C -0.18 0.17 8.38 37.16 0.31 0.48 16 4 C -0.14 0.06 8.84 37.16 0.33 0.39 16 5 O -0.36 -0.46 10.00 -35.23 -0.35 -0.82 16 6 C 0.06 -0.02 2.82 -25.92 -0.07 -0.09 16 7 H 0.09 -0.13 5.54 -51.93 -0.29 -0.42 16 8 C -0.14 0.10 7.70 -25.92 -0.20 -0.10 16 9 C 0.13 -0.03 4.35 -67.12 -0.29 -0.32 16 10 H 0.11 -0.10 8.05 -51.93 -0.42 -0.51 16 11 N -1.09 -0.33 5.79 -4.20 -0.02 -0.35 16 12 S 2.72 8.17 5.70 -107.50 -0.61 7.55 16 13 O -0.95 -4.08 14.92 -57.17 -0.85 -4.94 16 14 O -0.95 -5.31 17.67 -57.17 -1.01 -6.32 16 15 C -0.78 -2.00 6.54 29.04 0.19 -1.81 16 16 C 0.06 0.14 5.17 -106.25 -0.55 -0.41 16 17 C -0.10 -0.08 1.96 36.01 0.07 -0.01 16 18 O -0.54 0.25 12.86 -35.23 -0.45 -0.20 16 19 Si 0.70 -0.65 30.42 -169.99 -5.17 -5.82 16 20 C -0.17 -0.25 8.74 -41.21 -0.36 -0.61 16 21 C -0.16 -0.01 11.23 29.04 0.33 0.32 16 22 S 0.23 0.22 23.21 -107.50 -2.50 -2.28 16 23 C -0.16 0.01 7.71 -25.92 -0.20 -0.19 16 24 H 0.06 -0.05 7.02 -51.93 -0.36 -0.42 16 25 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 26 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 27 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 28 H 0.06 -0.03 8.14 -51.93 -0.42 -0.45 16 29 H 0.06 -0.08 6.24 -51.93 -0.32 -0.41 16 30 H 0.06 0.00 8.14 -51.93 -0.42 -0.43 16 31 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 32 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 33 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 34 H 0.10 -0.05 8.14 -51.93 -0.42 -0.47 16 35 H 0.42 -0.58 8.94 -34.47 -0.31 -0.89 16 36 H 0.11 0.13 5.65 -51.93 -0.29 -0.16 16 37 H 0.39 -1.94 8.74 45.56 0.40 -1.54 16 38 H -0.25 -0.40 7.11 56.52 0.40 0.00 16 39 H -0.25 -0.28 6.86 56.52 0.39 0.11 16 40 H 0.15 0.08 5.57 -52.48 -0.29 -0.21 16 41 H 0.18 -0.52 8.06 -52.48 -0.42 -0.95 16 42 H 0.10 0.02 8.14 -51.93 -0.42 -0.40 16 43 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 LS Contribution 370.84 15.07 5.59 5.59 Total: 0.00 -8.39 370.84 -11.79 -20.18 By element: Atomic # 1 Polarization: -4.40 SS G_CDS: -6.17 Total: -10.57 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -0.24 Total: -2.02 kcal Atomic # 7 Polarization: -0.33 SS G_CDS: -0.02 Total: -0.35 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -2.67 Total: -12.28 kcal Atomic # 14 Polarization: -0.65 SS G_CDS: -5.17 Total: -5.82 kcal Atomic # 16 Polarization: 8.38 SS G_CDS: -3.11 Total: 5.28 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -8.39 -11.79 -20.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_11572884_13652106.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.118 kcal (2) G-P(sol) polarization free energy of solvation -8.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds