Wall clock time and date at job start Mon Mar 8 2021 08:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 O 1.42895 * 109.47036 * 240.00558 * 2 1 3 6 6 C 1.42903 * 114.00578 * 59.99501 * 5 2 1 7 7 H 1.09004 * 112.84303 * 18.80372 * 6 5 2 8 8 C 1.53781 * 113.61844 * 149.99662 * 6 5 2 9 9 C 1.53780 * 87.07949 * 139.98357 * 8 6 5 10 10 H 1.08998 * 113.61265 * 89.20453 * 9 8 6 11 11 N 1.46502 * 113.61239 * 220.01871 * 9 8 6 12 12 S 1.65601 * 119.99804 * 215.00315 * 11 9 8 13 13 O 1.42104 * 106.39878 * 178.54416 * 12 11 9 14 14 O 1.42104 * 106.40252 * 311.45932 * 12 11 9 15 15 C 1.76197 * 107.21884 * 65.00193 * 12 11 9 16 16 C 1.33391 * 125.20127 * 89.99762 * 15 12 11 17 17 C 1.50701 * 122.54020 * 359.95874 * 16 15 12 18 18 O 1.42896 * 109.47047 * 285.00047 * 17 16 15 19 19 Si 1.86302 * 109.47240 * 164.99579 * 17 16 15 20 20 C 1.38420 * 114.91944 * 179.97438 * 16 15 12 21 21 C 1.33382 * 114.92240 * 0.02562 * 20 16 15 22 22 S 1.75875 * 125.20381 * 269.69466 * 15 12 11 23 23 C 1.53775 * 113.61685 * 247.49943 * 6 5 2 24 24 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 27 27 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 28 28 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 30 30 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 31 31 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 32 32 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 33 33 H 1.08998 * 113.61568 * 254.53931 * 8 6 5 34 34 H 1.09006 * 113.61008 * 25.43897 * 8 6 5 35 35 H 0.96994 * 120.00156 * 35.00840 * 11 9 8 36 36 H 1.09001 * 109.47256 * 44.99869 * 17 16 15 37 37 H 0.96705 * 113.99628 * 180.02562 * 18 17 16 38 38 H 1.48497 * 109.99945 * 298.68382 * 19 17 16 39 39 H 1.48504 * 109.99682 * 59.99908 * 19 17 16 40 40 H 1.08008 * 122.53533 * 180.02562 * 20 16 15 41 41 H 1.08005 * 125.20461 * 180.02562 * 21 20 16 42 42 H 1.08999 * 113.61580 * 334.56293 * 23 6 5 43 43 H 1.09001 * 113.61422 * 105.47176 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 2.0064 -0.6735 -1.1668 6 6 1.5847 -0.0772 -2.3951 7 1 1.2522 0.9537 -2.2729 8 6 2.5837 -0.2696 -3.5483 9 6 1.3667 -0.5002 -4.4596 10 1 0.9744 0.4146 -4.9040 11 7 1.5626 -1.5705 -5.4406 12 16 0.8886 -1.4454 -6.9481 13 8 1.2845 -2.6084 -7.6623 14 8 -0.4703 -1.0795 -6.7510 15 6 1.6597 -0.0807 -7.7527 16 6 2.7615 -0.1519 -8.5012 17 6 3.4914 -1.4470 -8.7483 18 8 4.2191 -1.8150 -7.5749 19 14 4.6748 -1.2313 -10.1709 20 6 3.1839 1.0541 -9.0335 21 6 2.4254 2.1046 -8.7169 22 16 1.0903 1.5824 -7.6979 23 6 0.6077 -0.9502 -3.2002 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 -1.7490 1.2492 31 1 3.1301 -0.7209 1.2493 32 1 1.6767 -0.2075 2.1392 33 1 3.1477 0.6306 -3.7922 34 1 3.2171 -1.1495 -3.4349 35 1 2.0869 -2.3523 -5.2072 36 1 2.7718 -2.2292 -8.9898 37 1 4.7145 -2.6409 -7.6622 38 1 3.9271 -0.8795 -11.4047 39 1 5.6612 -0.1673 -9.8541 40 1 4.0611 1.1380 -9.6580 41 1 2.6012 3.1198 -9.0410 42 1 0.7009 -2.0160 -2.9917 43 1 -0.4236 -0.5992 -3.1633 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_11572884_13652106.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:13:16 Heat of formation + Delta-G solvation = -83.740256 kcal Electronic energy + Delta-G solvation = -27658.498720 eV Core-core repulsion = 23732.539910 eV Total energy + Delta-G solvation = -3925.958810 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.094 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.93684 -40.06969 -38.70488 -38.32598 -37.19844 -37.04691 -34.56160 -33.04429 -31.59203 -28.41137 -28.32930 -28.08711 -26.62841 -25.00755 -24.24237 -21.85437 -21.27592 -20.80684 -20.12044 -19.39152 -18.65006 -18.42050 -17.95092 -17.36985 -17.13236 -16.48844 -16.23992 -15.96615 -15.76382 -15.50796 -15.21608 -14.71090 -14.55507 -14.46732 -14.33357 -14.25767 -13.80108 -13.70498 -13.53204 -13.42617 -13.33582 -13.25428 -13.19254 -12.85148 -12.79360 -12.69053 -12.65714 -12.53307 -12.34504 -12.29971 -11.85288 -11.84046 -11.79114 -11.26241 -10.65207 -10.47809 -10.34552 -10.27732 -9.77447 -4.99077 -0.93851 -0.69462 0.16952 0.52563 1.06157 1.23029 1.62546 1.81777 1.89095 2.49022 2.76207 3.20140 3.35558 3.45027 3.52017 3.74212 3.80000 3.86905 3.89680 3.91943 3.94533 3.98942 4.06505 4.13852 4.34039 4.40278 4.57610 4.64381 4.68858 4.72400 4.79316 4.80995 4.81903 4.86816 4.92483 4.93597 4.94938 5.01745 5.05436 5.16863 5.31481 5.35297 5.40090 5.96382 6.41958 6.81943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.098 3.902 3 C -0.178 4.178 4 C -0.139 4.139 5 O -0.375 6.375 6 C 0.061 3.939 7 H 0.107 0.893 8 C -0.133 4.133 9 C 0.124 3.876 10 H 0.115 0.885 11 N -1.080 6.080 12 S 2.728 3.272 13 O -0.965 6.965 14 O -0.982 6.982 15 C -0.799 4.799 16 C 0.047 3.953 17 C -0.115 4.115 18 O -0.549 6.549 19 Si 0.786 3.214 20 C -0.192 4.192 21 C -0.146 4.146 22 S 0.228 5.772 23 C -0.167 4.167 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.431 0.569 36 H 0.107 0.893 37 H 0.407 0.593 38 H -0.289 1.289 39 H -0.273 1.273 40 H 0.156 0.844 41 H 0.211 0.789 42 H 0.094 0.906 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.992 2.558 1.465 4.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.059 3.941 3 C -0.235 4.235 4 C -0.197 4.197 5 O -0.295 6.295 6 C 0.003 3.997 7 H 0.124 0.876 8 C -0.172 4.172 9 C 0.017 3.983 10 H 0.133 0.867 11 N -0.841 5.841 12 S 2.815 3.185 13 O -0.955 6.955 14 O -0.972 6.972 15 C -1.000 5.000 16 C 0.029 3.971 17 C -0.226 4.226 18 O -0.359 6.359 19 Si 0.689 3.311 20 C -0.221 4.221 21 C -0.284 4.284 22 S 0.495 5.505 23 C -0.207 4.207 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.117 0.883 35 H 0.269 0.731 36 H 0.124 0.876 37 H 0.259 0.741 38 H -0.215 1.215 39 H -0.200 1.200 40 H 0.173 0.827 41 H 0.228 0.772 42 H 0.112 0.888 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.146 3.881 1.397 4.650 hybrid contribution 1.073 -0.085 -0.542 1.205 sum 3.219 3.797 0.856 5.051 Atomic orbital electron populations 1.22468 0.95046 1.02659 1.03153 1.21680 0.93630 0.92542 0.86209 1.22459 1.01991 0.95765 1.03288 1.21790 1.01699 1.00745 0.95419 1.88016 1.74031 1.54131 1.13317 1.23502 0.95617 0.97375 0.83235 0.87578 1.23585 0.96647 1.04106 0.92859 1.22102 0.98538 0.89851 0.87828 0.86698 1.55106 1.70774 1.30399 1.27863 1.00715 0.72733 0.72447 0.72603 1.93507 1.83411 1.46510 1.72047 1.93591 1.32984 1.84680 1.85895 1.35644 1.17056 1.21589 1.25761 1.18440 0.91386 0.95876 0.91385 1.25241 1.02812 0.95043 0.99543 1.86346 1.66929 1.47776 1.34875 0.93796 0.78766 0.86030 0.72463 1.20427 1.03835 0.91848 1.06003 1.26599 0.96799 1.04795 1.00188 1.84215 1.25114 0.94343 1.46857 1.24059 0.99776 1.02265 0.94619 0.91932 0.92420 0.90626 0.90488 0.92107 0.91661 0.92406 0.92229 0.89839 0.89428 0.88335 0.73061 0.87570 0.74122 1.21547 1.19961 0.82737 0.77246 0.88776 0.90187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.25 8.38 71.98 0.60 0.85 16 2 C 0.10 -0.01 1.11 -10.79 -0.01 -0.03 16 3 C -0.18 0.43 8.38 71.98 0.60 1.03 16 4 C -0.14 0.10 8.84 71.98 0.64 0.74 16 5 O -0.38 -1.08 10.00 -148.98 -1.49 -2.57 16 6 C 0.06 -0.04 2.82 31.12 0.09 0.05 16 7 H 0.11 -0.35 5.54 -2.38 -0.01 -0.37 16 8 C -0.13 0.19 7.70 31.12 0.24 0.43 16 9 C 0.12 0.00 4.35 45.52 0.20 0.19 16 10 H 0.12 -0.16 8.05 -2.39 -0.02 -0.18 16 11 N -1.08 -1.54 5.79 -167.20 -0.97 -2.51 16 12 S 2.73 19.69 5.70 -56.49 -0.32 19.37 16 13 O -0.96 -9.68 14.92 -128.00 -1.91 -11.59 16 14 O -0.98 -12.43 17.67 -128.00 -2.26 -14.69 16 15 C -0.80 -4.62 6.54 66.72 0.44 -4.19 16 16 C 0.05 0.24 5.17 -20.92 -0.11 0.13 16 17 C -0.12 -0.23 1.96 71.24 0.14 -0.09 16 18 O -0.55 0.49 12.86 -148.98 -1.92 -1.42 16 19 Si 0.79 -1.50 30.42 68.60 2.09 0.58 16 20 C -0.19 -0.51 8.74 21.21 0.19 -0.32 16 21 C -0.15 0.12 11.23 66.72 0.75 0.87 16 22 S 0.23 0.44 23.21 -56.49 -1.31 -0.87 16 23 C -0.17 -0.07 7.71 31.12 0.24 0.17 16 24 H 0.06 -0.13 7.02 -2.39 -0.02 -0.14 16 25 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 26 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 27 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 28 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 29 H 0.06 -0.23 6.24 -2.39 -0.01 -0.25 16 30 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 31 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 32 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 33 H 0.09 -0.27 8.14 -2.39 -0.02 -0.29 16 34 H 0.10 -0.07 8.14 -2.38 -0.02 -0.09 16 35 H 0.43 -0.81 8.94 -96.75 -0.87 -1.67 16 36 H 0.11 0.35 5.65 -2.39 -0.01 0.34 16 37 H 0.41 -4.20 8.74 -74.05 -0.65 -4.85 16 38 H -0.29 -1.12 7.11 99.48 0.71 -0.41 16 39 H -0.27 -0.54 6.86 99.48 0.68 0.14 16 40 H 0.16 0.12 5.57 -2.91 -0.02 0.10 16 41 H 0.21 -1.67 8.06 -2.91 -0.02 -1.70 16 42 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 43 H 0.08 0.01 8.14 -2.39 -0.02 -0.01 16 Total: 0.00 -19.58 370.84 -4.55 -24.12 By element: Atomic # 1 Polarization: -9.81 SS G_CDS: -0.45 Total: -10.27 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: 4.00 Total: -0.16 kcal Atomic # 7 Polarization: -1.54 SS G_CDS: -0.97 Total: -2.51 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -7.58 Total: -30.27 kcal Atomic # 14 Polarization: -1.50 SS G_CDS: 2.09 Total: 0.58 kcal Atomic # 16 Polarization: 20.13 SS G_CDS: -1.63 Total: 18.49 kcal Total: -19.58 -4.55 -24.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_11572884_13652106.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.617 kcal (2) G-P(sol) polarization free energy of solvation -19.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds