Wall clock time and date at job start Mon Mar 8 2021 08:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47062 * 2 1 4 4 C 1.53004 * 109.47135 * 240.00262 * 2 1 3 5 5 O 1.42895 * 109.47057 * 120.00028 * 2 1 3 6 6 C 1.42905 * 113.99924 * 60.00263 * 5 2 1 7 7 H 1.08996 * 112.84877 * 341.19133 * 6 5 2 8 8 C 1.53778 * 113.69224 * 112.46626 * 6 5 2 9 9 C 1.53774 * 87.08168 * 139.98897 * 8 6 5 10 10 H 1.09005 * 113.68493 * 89.12775 * 9 8 6 11 11 N 1.46497 * 113.61577 * 220.01195 * 9 8 6 12 12 S 1.65598 * 120.00600 * 241.85422 * 11 9 8 13 13 O 1.42092 * 106.40521 * 309.42826 * 12 11 9 14 14 O 1.42101 * 106.40383 * 176.49997 * 12 11 9 15 15 C 1.76201 * 107.21517 * 62.96664 * 12 11 9 16 16 C 1.33399 * 122.54233 * 67.58811 * 15 12 11 17 17 C 1.50697 * 125.19777 * 359.97438 * 16 15 12 18 18 O 1.42900 * 109.47410 * 315.18106 * 17 16 15 19 19 Si 1.86302 * 109.46665 * 195.18552 * 17 16 15 20 20 S 1.75879 * 109.59252 * 179.77901 * 16 15 12 21 21 C 1.75883 * 90.97441 * 0.31335 * 20 16 15 22 22 C 1.33386 * 109.58872 * 359.68455 * 21 20 16 23 23 C 1.53772 * 87.08514 * 334.56726 * 9 8 6 24 24 H 1.09001 * 109.47364 * 299.99860 * 1 2 3 25 25 H 1.09004 * 109.47045 * 59.99781 * 1 2 3 26 26 H 1.09001 * 109.47556 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47169 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47656 * 300.00250 * 3 2 1 29 29 H 1.09010 * 109.46912 * 60.00171 * 3 2 1 30 30 H 1.09002 * 109.46869 * 299.99751 * 4 2 1 31 31 H 1.08996 * 109.46858 * 60.00194 * 4 2 1 32 32 H 1.09006 * 109.46697 * 180.02562 * 4 2 1 33 33 H 1.09003 * 113.61296 * 25.43596 * 8 6 5 34 34 H 1.08999 * 113.61194 * 254.54475 * 8 6 5 35 35 H 0.97010 * 119.99755 * 61.85526 * 11 9 8 36 36 H 1.08998 * 109.47366 * 75.18638 * 17 16 15 37 37 H 0.96700 * 113.99747 * 180.02562 * 18 17 16 38 38 H 1.48497 * 110.00340 * 298.68069 * 19 17 16 39 39 H 1.48497 * 110.00207 * 60.00354 * 19 17 16 40 40 H 1.08000 * 125.20517 * 179.97438 * 21 20 16 41 41 H 1.08003 * 122.53777 * 180.26795 * 22 21 20 42 42 H 1.08998 * 113.61847 * 139.98022 * 23 9 8 43 43 H 1.09007 * 113.61163 * 270.80264 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0063 -0.6736 1.1667 6 6 1.5846 -2.0356 1.2644 7 1 0.7235 -2.2582 0.6344 8 6 2.7319 -3.0494 1.1206 9 6 2.0541 -3.8565 2.2404 10 1 1.3212 -4.5776 1.8783 11 7 2.9976 -4.4368 3.1991 12 16 3.0909 -6.0805 3.3777 13 8 1.7601 -6.5394 3.5707 14 8 4.1395 -6.3245 4.3052 15 6 3.6269 -6.7430 1.8354 16 6 4.8499 -6.5279 1.3482 17 6 5.9222 -5.7113 2.0222 18 8 5.3548 -4.4979 2.5201 19 14 7.2631 -5.3110 0.7923 20 16 5.0212 -7.3476 -0.1985 21 6 3.3705 -7.9464 -0.0979 22 6 2.8106 -7.5259 1.0373 23 6 1.4332 -2.5312 2.7123 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8901 30 1 1.6767 -1.7489 -1.2493 31 1 1.6767 -0.2073 -2.1392 32 1 3.1300 -0.7216 -1.2490 33 1 3.7064 -2.6485 1.3996 34 1 2.7437 -3.5618 0.1586 35 1 3.5677 -3.8582 3.7294 36 1 6.3462 -6.2804 2.8495 37 1 5.9895 -3.9214 2.9670 38 1 7.8829 -6.5638 0.2908 39 1 6.6979 -4.5350 -0.3406 40 1 2.8861 -8.5643 -0.8395 41 1 1.7972 -7.7774 1.3132 42 1 0.3964 -2.6253 3.0354 43 1 2.0520 -1.9894 3.4277 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_11572884_14772022.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:13:22 Heat of formation + Delta-G solvation = -79.768109 kcal Electronic energy + Delta-G solvation = -28371.372369 eV Core-core repulsion = 24445.585805 eV Total energy + Delta-G solvation = -3925.786565 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.094 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.88513 -39.54451 -38.59340 -38.18115 -37.40336 -36.64975 -34.43326 -32.88753 -31.99671 -28.46540 -28.40434 -27.50306 -26.56838 -24.91306 -24.25941 -21.77009 -21.22845 -20.84559 -19.86919 -18.99131 -18.58484 -18.20030 -17.93621 -17.63387 -17.02841 -16.30261 -16.03114 -15.88740 -15.78589 -15.27693 -15.11375 -14.95005 -14.53384 -14.48482 -14.30638 -14.12193 -13.74188 -13.53435 -13.40078 -13.25896 -13.13001 -12.96181 -12.92731 -12.86973 -12.82705 -12.72139 -12.69318 -12.59379 -12.27384 -12.16188 -11.87679 -11.75130 -11.68597 -11.28056 -10.83854 -10.36915 -10.21236 -10.10518 -9.79723 -5.38016 -0.59355 -0.40411 0.29747 0.63292 0.95870 1.13613 1.41636 1.72236 2.16683 2.76497 2.82024 3.04612 3.48256 3.50641 3.58867 3.61772 3.81640 3.85816 3.87631 3.97270 4.03162 4.06913 4.17836 4.22213 4.31981 4.43325 4.54246 4.61627 4.70043 4.73684 4.78858 4.82845 4.85739 4.87884 4.88322 4.91260 5.04409 5.07276 5.11793 5.13275 5.27849 5.30818 5.47382 6.20086 6.27868 6.41859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.105 3.895 3 C -0.139 4.139 4 C -0.176 4.176 5 O -0.358 6.358 6 C 0.059 3.941 7 H 0.091 0.909 8 C -0.159 4.159 9 C 0.131 3.869 10 H 0.112 0.888 11 N -1.074 6.074 12 S 2.719 3.281 13 O -0.963 6.963 14 O -0.955 6.955 15 C -0.661 4.661 16 C -0.048 4.048 17 C -0.068 4.068 18 O -0.540 6.540 19 Si 0.686 3.314 20 S 0.130 5.870 21 C -0.210 4.210 22 C -0.076 4.076 23 C -0.138 4.138 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.066 0.934 35 H 0.422 0.578 36 H 0.110 0.890 37 H 0.394 0.606 38 H -0.238 1.238 39 H -0.235 1.235 40 H 0.176 0.824 41 H 0.160 0.840 42 H 0.079 0.921 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.587 3.612 -3.180 5.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.066 3.934 3 C -0.196 4.196 4 C -0.233 4.233 5 O -0.277 6.277 6 C 0.000 4.000 7 H 0.109 0.891 8 C -0.199 4.199 9 C 0.023 3.977 10 H 0.130 0.870 11 N -0.834 5.834 12 S 2.805 3.195 13 O -0.953 6.953 14 O -0.945 6.945 15 C -0.760 4.760 16 C -0.169 4.169 17 C -0.180 4.180 18 O -0.349 6.349 19 Si 0.584 3.416 20 S 0.393 5.607 21 C -0.345 4.345 22 C -0.104 4.104 23 C -0.177 4.177 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.122 0.878 34 H 0.085 0.915 35 H 0.259 0.741 36 H 0.128 0.872 37 H 0.245 0.755 38 H -0.161 1.161 39 H -0.159 1.159 40 H 0.193 0.807 41 H 0.177 0.823 42 H 0.098 0.902 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.300 2.560 -4.606 6.217 hybrid contribution -1.235 -0.242 0.263 1.286 sum 2.064 2.317 -4.343 5.338 Atomic orbital electron populations 1.22476 0.95665 1.02491 1.03072 1.21524 0.93091 0.93221 0.85536 1.21765 1.01982 0.93234 1.02592 1.22469 1.02255 1.00749 0.97870 1.88031 1.73724 1.23223 1.42747 1.23457 0.97089 0.82050 0.97356 0.89103 1.24011 1.00362 0.96745 0.98788 1.21901 0.91156 0.94734 0.89909 0.87017 1.55136 1.50610 1.24920 1.52710 1.01252 0.73308 0.72366 0.72572 1.93588 1.37190 1.80229 1.84312 1.93563 1.57597 1.84109 1.59213 1.29999 1.02354 1.16612 1.27029 1.23651 0.96613 0.99240 0.97367 1.24436 0.99597 0.88370 1.05631 1.86409 1.39787 1.30343 1.78367 0.94419 0.82186 0.85762 0.79234 1.84472 1.13772 1.46313 1.16132 1.25897 0.97042 1.08358 1.03202 1.19799 1.01031 0.96781 0.92830 1.23588 1.02278 0.94899 0.96972 0.91541 0.91429 0.92194 0.91782 0.91137 0.91737 0.92345 0.91616 0.91730 0.87804 0.91540 0.74077 0.87236 0.75520 1.16149 1.15867 0.80680 0.82254 0.90247 0.88275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.15 8.38 37.16 0.31 0.46 16 2 C 0.11 -0.02 1.11 -90.62 -0.10 -0.12 16 3 C -0.14 0.08 8.84 37.16 0.33 0.41 16 4 C -0.18 0.12 8.38 37.16 0.31 0.43 16 5 O -0.36 -0.39 10.00 -35.23 -0.35 -0.74 16 6 C 0.06 -0.03 2.82 -25.92 -0.07 -0.10 16 7 H 0.09 -0.10 5.54 -51.93 -0.29 -0.39 16 8 C -0.16 0.12 7.71 -25.92 -0.20 -0.08 16 9 C 0.13 -0.07 4.40 -67.13 -0.30 -0.37 16 10 H 0.11 -0.07 7.84 -51.93 -0.41 -0.48 16 11 N -1.07 0.34 3.94 -4.21 -0.02 0.33 16 12 S 2.72 7.53 4.88 -107.50 -0.52 7.00 16 13 O -0.96 -5.40 16.96 -57.17 -0.97 -6.36 16 14 O -0.95 -4.51 16.56 -62.37 -1.03 -5.55 16 15 C -0.66 -1.48 5.74 -41.21 -0.24 -1.72 16 16 C -0.05 -0.07 5.78 -36.00 -0.21 -0.28 16 17 C -0.07 0.08 2.08 36.00 0.07 0.15 16 18 O -0.54 1.61 8.26 -44.52 -0.37 1.25 16 19 Si 0.69 -1.57 31.09 -169.99 -5.28 -6.86 16 20 S 0.13 0.15 20.74 -107.50 -2.23 -2.08 16 21 C -0.21 -0.14 11.23 29.04 0.33 0.19 16 22 C -0.08 -0.13 9.69 -41.21 -0.40 -0.53 16 23 C -0.14 0.10 7.70 -25.92 -0.20 -0.10 16 24 H 0.07 -0.02 8.14 -51.93 -0.42 -0.45 16 25 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 26 H 0.06 -0.07 6.24 -51.93 -0.32 -0.39 16 27 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 28 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 29 H 0.06 -0.02 8.14 -51.92 -0.42 -0.44 16 30 H 0.06 -0.04 7.02 -51.93 -0.36 -0.41 16 31 H 0.06 -0.09 8.14 -51.93 -0.42 -0.51 16 32 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 33 H 0.10 -0.06 8.14 -51.93 -0.42 -0.48 16 34 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 35 H 0.42 -0.92 7.95 -34.47 -0.27 -1.20 16 36 H 0.11 -0.18 7.80 -51.93 -0.41 -0.58 16 37 H 0.39 -3.02 8.74 45.56 0.40 -2.62 16 38 H -0.24 -0.01 7.11 56.52 0.40 0.40 16 39 H -0.24 -0.10 7.11 56.52 0.40 0.31 16 40 H 0.18 -0.32 8.06 -52.49 -0.42 -0.74 16 41 H 0.16 0.11 7.74 -52.48 -0.41 -0.29 16 42 H 0.08 -0.08 8.14 -51.93 -0.42 -0.50 16 43 H 0.10 -0.08 8.14 -51.93 -0.42 -0.50 16 LS Contribution 367.00 15.07 5.53 5.53 Total: 0.00 -8.86 367.00 -11.95 -20.81 By element: Atomic # 1 Polarization: -5.34 SS G_CDS: -6.34 Total: -11.68 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -0.36 Total: -1.64 kcal Atomic # 7 Polarization: 0.34 SS G_CDS: -0.02 Total: 0.33 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -2.72 Total: -11.41 kcal Atomic # 14 Polarization: -1.57 SS G_CDS: -5.28 Total: -6.86 kcal Atomic # 16 Polarization: 7.68 SS G_CDS: -2.75 Total: 4.92 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -8.86 -11.95 -20.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_11572884_14772022.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.963 kcal (2) G-P(sol) polarization free energy of solvation -8.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds