Wall clock time and date at job start Mon Mar 8 2021 08:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47062 * 2 1 4 4 C 1.53004 * 109.47135 * 240.00262 * 2 1 3 5 5 O 1.42895 * 109.47057 * 120.00028 * 2 1 3 6 6 C 1.42905 * 113.99924 * 60.00263 * 5 2 1 7 7 H 1.08996 * 112.84877 * 341.19133 * 6 5 2 8 8 C 1.53778 * 113.69224 * 112.46626 * 6 5 2 9 9 C 1.53774 * 87.08168 * 139.98897 * 8 6 5 10 10 H 1.09005 * 113.68493 * 89.12775 * 9 8 6 11 11 N 1.46497 * 113.61577 * 220.01195 * 9 8 6 12 12 S 1.65598 * 120.00600 * 241.85422 * 11 9 8 13 13 O 1.42092 * 106.40521 * 309.42826 * 12 11 9 14 14 O 1.42101 * 106.40383 * 176.49997 * 12 11 9 15 15 C 1.76201 * 107.21517 * 62.96664 * 12 11 9 16 16 C 1.33399 * 122.54233 * 67.58811 * 15 12 11 17 17 C 1.50697 * 125.19777 * 359.97438 * 16 15 12 18 18 O 1.42900 * 109.47410 * 315.18106 * 17 16 15 19 19 Si 1.86302 * 109.46665 * 195.18552 * 17 16 15 20 20 S 1.75879 * 109.59252 * 179.77901 * 16 15 12 21 21 C 1.75883 * 90.97441 * 0.31335 * 20 16 15 22 22 C 1.33386 * 109.58872 * 359.68455 * 21 20 16 23 23 C 1.53772 * 87.08514 * 334.56726 * 9 8 6 24 24 H 1.09001 * 109.47364 * 299.99860 * 1 2 3 25 25 H 1.09004 * 109.47045 * 59.99781 * 1 2 3 26 26 H 1.09001 * 109.47556 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47169 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47656 * 300.00250 * 3 2 1 29 29 H 1.09010 * 109.46912 * 60.00171 * 3 2 1 30 30 H 1.09002 * 109.46869 * 299.99751 * 4 2 1 31 31 H 1.08996 * 109.46858 * 60.00194 * 4 2 1 32 32 H 1.09006 * 109.46697 * 180.02562 * 4 2 1 33 33 H 1.09003 * 113.61296 * 25.43596 * 8 6 5 34 34 H 1.08999 * 113.61194 * 254.54475 * 8 6 5 35 35 H 0.97010 * 119.99755 * 61.85526 * 11 9 8 36 36 H 1.08998 * 109.47366 * 75.18638 * 17 16 15 37 37 H 0.96700 * 113.99747 * 180.02562 * 18 17 16 38 38 H 1.48497 * 110.00340 * 298.68069 * 19 17 16 39 39 H 1.48497 * 110.00207 * 60.00354 * 19 17 16 40 40 H 1.08000 * 125.20517 * 179.97438 * 21 20 16 41 41 H 1.08003 * 122.53777 * 180.26795 * 22 21 20 42 42 H 1.08998 * 113.61847 * 139.98022 * 23 9 8 43 43 H 1.09007 * 113.61163 * 270.80264 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0063 -0.6736 1.1667 6 6 1.5846 -2.0356 1.2644 7 1 0.7235 -2.2582 0.6344 8 6 2.7319 -3.0494 1.1206 9 6 2.0541 -3.8565 2.2404 10 1 1.3212 -4.5776 1.8783 11 7 2.9976 -4.4368 3.1991 12 16 3.0909 -6.0805 3.3777 13 8 1.7601 -6.5394 3.5707 14 8 4.1395 -6.3245 4.3052 15 6 3.6269 -6.7430 1.8354 16 6 4.8499 -6.5279 1.3482 17 6 5.9222 -5.7113 2.0222 18 8 5.3548 -4.4979 2.5201 19 14 7.2631 -5.3110 0.7923 20 16 5.0212 -7.3476 -0.1985 21 6 3.3705 -7.9464 -0.0979 22 6 2.8106 -7.5259 1.0373 23 6 1.4332 -2.5312 2.7123 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8901 30 1 1.6767 -1.7489 -1.2493 31 1 1.6767 -0.2073 -2.1392 32 1 3.1300 -0.7216 -1.2490 33 1 3.7064 -2.6485 1.3996 34 1 2.7437 -3.5618 0.1586 35 1 3.5677 -3.8582 3.7294 36 1 6.3462 -6.2804 2.8495 37 1 5.9895 -3.9214 2.9670 38 1 7.8829 -6.5638 0.2908 39 1 6.6979 -4.5350 -0.3406 40 1 2.8861 -8.5643 -0.8395 41 1 1.7972 -7.7774 1.3132 42 1 0.3964 -2.6253 3.0354 43 1 2.0520 -1.9894 3.4277 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_11572884_14772022.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:13:21 Heat of formation + Delta-G solvation = -80.116210 kcal Electronic energy + Delta-G solvation = -28371.387464 eV Core-core repulsion = 24445.585805 eV Total energy + Delta-G solvation = -3925.801660 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.094 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.86016 -39.55067 -38.61313 -38.35306 -37.35809 -36.95364 -34.43008 -32.90350 -31.99544 -28.40088 -28.33498 -27.51874 -26.52339 -24.90514 -24.27709 -21.86427 -21.20659 -20.82739 -19.99181 -18.96852 -18.61577 -18.18403 -18.00284 -17.66930 -17.05372 -16.36360 -16.00480 -15.90592 -15.79230 -15.31896 -15.11495 -14.96790 -14.51910 -14.45737 -14.28719 -14.12585 -13.78128 -13.57836 -13.38081 -13.27662 -13.22444 -13.15663 -13.12388 -12.85104 -12.79022 -12.73246 -12.66858 -12.64937 -12.24034 -12.13491 -11.93829 -11.74300 -11.72347 -11.23400 -10.74932 -10.34703 -10.21794 -10.15973 -9.84252 -5.22230 -0.70935 -0.53537 0.23016 0.57499 1.00727 1.11383 1.54808 1.83860 2.06239 2.69178 2.81438 3.09779 3.40844 3.56225 3.61692 3.65663 3.86379 3.91166 3.93474 4.01861 4.02870 4.11926 4.21595 4.23551 4.39686 4.44492 4.63026 4.63510 4.69936 4.80172 4.80756 4.83292 4.88637 4.91655 4.94544 4.97219 5.05446 5.09481 5.12582 5.18046 5.34285 5.36607 5.50425 6.28603 6.45567 6.76040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.100 3.900 3 C -0.139 4.139 4 C -0.173 4.173 5 O -0.374 6.374 6 C 0.058 3.942 7 H 0.098 0.902 8 C -0.152 4.152 9 C 0.129 3.871 10 H 0.112 0.888 11 N -1.061 6.061 12 S 2.731 3.269 13 O -0.996 6.996 14 O -0.977 6.977 15 C -0.672 4.672 16 C -0.056 4.056 17 C -0.078 4.078 18 O -0.546 6.546 19 Si 0.772 3.228 20 S 0.119 5.881 21 C -0.205 4.205 22 C -0.094 4.094 23 C -0.136 4.136 24 H 0.060 0.940 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.431 0.569 36 H 0.116 0.884 37 H 0.415 0.585 38 H -0.269 1.269 39 H -0.271 1.271 40 H 0.199 0.801 41 H 0.164 0.836 42 H 0.082 0.918 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.817 4.202 -3.555 6.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.061 3.939 3 C -0.196 4.196 4 C -0.231 4.231 5 O -0.293 6.293 6 C -0.001 4.001 7 H 0.115 0.885 8 C -0.192 4.192 9 C 0.021 3.979 10 H 0.130 0.870 11 N -0.824 5.824 12 S 2.819 3.181 13 O -0.986 6.986 14 O -0.968 6.968 15 C -0.772 4.772 16 C -0.177 4.177 17 C -0.189 4.189 18 O -0.359 6.359 19 Si 0.673 3.327 20 S 0.382 5.618 21 C -0.340 4.340 22 C -0.122 4.122 23 C -0.175 4.175 24 H 0.079 0.921 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.122 0.878 34 H 0.082 0.918 35 H 0.271 0.729 36 H 0.134 0.866 37 H 0.270 0.730 38 H -0.195 1.195 39 H -0.197 1.197 40 H 0.216 0.784 41 H 0.181 0.819 42 H 0.101 0.899 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.533 3.173 -4.928 6.844 hybrid contribution -1.298 -0.397 0.331 1.397 sum 2.235 2.776 -4.597 5.817 Atomic orbital electron populations 1.22464 0.95185 1.02727 1.03194 1.21639 0.93524 0.93345 0.85392 1.21783 1.01712 0.93157 1.02922 1.22442 1.01823 1.00849 0.97969 1.88008 1.74100 1.23838 1.43383 1.23515 0.97349 0.81598 0.97603 0.88464 1.23940 1.00291 0.96465 0.98482 1.21978 0.91164 0.94828 0.89945 0.86994 1.54863 1.50861 1.23763 1.52904 1.00601 0.72263 0.72840 0.72436 1.93545 1.38776 1.81208 1.85060 1.93522 1.57988 1.84799 1.60457 1.29912 1.02977 1.17453 1.26866 1.24037 0.97006 0.99243 0.97380 1.24618 0.99115 0.88944 1.06268 1.86359 1.40869 1.29991 1.78654 0.93438 0.79833 0.82670 0.76720 1.84524 1.14484 1.46568 1.16267 1.26180 0.96587 1.07941 1.03245 1.19961 1.01458 0.97383 0.93374 1.23588 1.02498 0.94509 0.96955 0.92096 0.90618 0.91911 0.92208 0.90000 0.92224 0.92291 0.90812 0.92351 0.87817 0.91791 0.72914 0.86637 0.73039 1.19480 1.19679 0.78432 0.81856 0.89906 0.88109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.35 8.38 71.98 0.60 0.96 16 2 C 0.10 -0.05 1.11 -10.79 -0.01 -0.06 16 3 C -0.14 0.18 8.84 71.98 0.64 0.82 16 4 C -0.17 0.29 8.38 71.98 0.60 0.90 16 5 O -0.37 -0.80 10.00 -148.98 -1.49 -2.29 16 6 C 0.06 -0.06 2.82 31.12 0.09 0.03 16 7 H 0.10 -0.24 5.54 -2.39 -0.01 -0.26 16 8 C -0.15 0.22 7.71 31.12 0.24 0.46 16 9 C 0.13 -0.13 4.40 45.51 0.20 0.07 16 10 H 0.11 -0.10 7.84 -2.38 -0.02 -0.12 16 11 N -1.06 0.48 3.94 -167.22 -0.66 -0.18 16 12 S 2.73 17.14 4.88 -56.49 -0.28 16.87 16 13 O -1.00 -12.30 16.96 -128.00 -2.17 -14.47 16 14 O -0.98 -9.85 16.56 -123.03 -2.04 -11.88 16 15 C -0.67 -3.43 5.74 21.22 0.12 -3.30 16 16 C -0.06 -0.18 5.78 24.59 0.14 -0.04 16 17 C -0.08 0.19 2.08 71.23 0.15 0.34 16 18 O -0.55 3.51 8.26 -140.09 -1.16 2.35 16 19 Si 0.77 -3.61 31.09 68.60 2.13 -1.48 16 20 S 0.12 0.32 20.74 -56.49 -1.17 -0.86 16 21 C -0.20 -0.28 11.23 66.72 0.75 0.47 16 22 C -0.09 -0.37 9.69 21.22 0.21 -0.17 16 23 C -0.14 0.22 7.70 31.12 0.24 0.46 16 24 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 25 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 26 H 0.06 -0.16 6.24 -2.39 -0.01 -0.18 16 27 H 0.06 -0.03 8.14 -2.38 -0.02 -0.05 16 28 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 29 H 0.06 -0.02 8.14 -2.38 -0.02 -0.04 16 30 H 0.06 -0.11 7.02 -2.39 -0.02 -0.12 16 31 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 32 H 0.06 -0.02 8.14 -2.38 -0.02 -0.04 16 33 H 0.10 -0.14 8.14 -2.39 -0.02 -0.16 16 34 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 35 H 0.43 -1.96 7.95 -96.74 -0.77 -2.73 16 36 H 0.12 -0.41 7.80 -2.39 -0.02 -0.43 16 37 H 0.42 -6.83 8.74 -74.06 -0.65 -7.48 16 38 H -0.27 -0.12 7.11 99.48 0.71 0.58 16 39 H -0.27 -0.34 7.11 99.48 0.71 0.37 16 40 H 0.20 -0.85 8.06 -2.91 -0.02 -0.87 16 41 H 0.16 0.39 7.74 -2.91 -0.02 0.37 16 42 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 43 H 0.10 -0.19 8.14 -2.38 -0.02 -0.21 16 Total: 0.00 -20.38 367.00 -3.21 -23.59 By element: Atomic # 1 Polarization: -12.24 SS G_CDS: -0.34 Total: -12.59 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 3.96 Total: 0.94 kcal Atomic # 7 Polarization: 0.48 SS G_CDS: -0.66 Total: -0.18 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -6.86 Total: -26.29 kcal Atomic # 14 Polarization: -3.61 SS G_CDS: 2.13 Total: -1.48 kcal Atomic # 16 Polarization: 17.46 SS G_CDS: -1.45 Total: 16.01 kcal Total: -20.38 -3.21 -23.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_11572884_14772022.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.528 kcal (2) G-P(sol) polarization free energy of solvation -20.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds