Wall clock time and date at job start Mon Mar 8 2021 08:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33380 * 125.20231 * 2 1 4 4 C 1.50708 * 122.54299 * 359.97438 * 3 2 1 5 5 O 1.42893 * 109.46977 * 316.92113 * 4 3 2 6 6 Si 1.86298 * 109.46874 * 76.91951 * 4 3 2 7 7 C 1.38423 * 114.92244 * 180.21105 * 3 2 1 8 8 S 1.76202 * 122.54596 * 179.76676 * 7 3 2 9 9 O 1.42094 * 106.40464 * 152.11918 * 8 7 3 10 10 O 1.42107 * 106.40012 * 19.19702 * 8 7 3 11 11 N 1.65599 * 107.21587 * 265.66416 * 8 7 3 12 12 C 1.46498 * 120.00390 * 62.23718 * 11 8 7 13 13 H 1.08995 * 112.84909 * 4.86756 * 12 11 8 14 14 C 1.53951 * 113.67041 * 136.11857 * 12 11 8 15 15 C 1.53782 * 87.02078 * 139.93005 * 14 12 11 16 16 H 1.08997 * 113.61445 * 89.23114 * 15 14 12 17 17 O 1.42900 * 113.61412 * 220.04809 * 15 14 12 18 18 C 1.42895 * 114.00246 * 249.13739 * 17 15 14 19 19 C 1.53005 * 109.47172 * 60.00138 * 18 17 15 20 20 C 1.52998 * 109.47718 * 180.02562 * 18 17 15 21 21 C 1.53002 * 109.47119 * 300.00176 * 18 17 15 22 22 C 1.53777 * 87.17492 * 334.63933 * 15 14 12 23 23 C 1.33394 * 114.91753 * 359.49625 * 7 3 2 24 24 C 1.50702 * 125.20219 * 180.25162 * 23 7 3 25 25 S 1.75880 * 109.59352 * 0.26880 * 23 7 3 26 26 H 1.09003 * 109.47125 * 183.75835 * 1 2 3 27 27 H 1.09002 * 109.46783 * 303.75662 * 1 2 3 28 28 H 1.08999 * 109.47147 * 63.75444 * 1 2 3 29 29 H 1.08994 * 109.46976 * 196.92017 * 4 3 2 30 30 H 0.96698 * 114.00234 * 301.53945 * 5 4 3 31 31 H 1.48507 * 110.00109 * 64.22063 * 6 4 3 32 32 H 1.48505 * 110.00106 * 185.53635 * 6 4 3 33 33 H 0.97006 * 119.99824 * 242.23674 * 11 8 7 34 34 H 1.09000 * 113.60906 * 25.41127 * 14 12 11 35 35 H 1.08992 * 113.66837 * 254.46324 * 14 12 11 36 36 H 1.08996 * 109.46736 * 59.99916 * 19 18 17 37 37 H 1.08998 * 109.47397 * 180.02562 * 19 18 17 38 38 H 1.09009 * 109.46832 * 300.00394 * 19 18 17 39 39 H 1.09001 * 109.47088 * 59.99548 * 20 18 17 40 40 H 1.08995 * 109.47265 * 180.02562 * 20 18 17 41 41 H 1.09005 * 109.46912 * 300.00525 * 20 18 17 42 42 H 1.09006 * 109.47021 * 60.00078 * 21 18 17 43 43 H 1.09004 * 109.46977 * 179.97438 * 21 18 17 44 44 H 1.08997 * 109.47452 * 299.99552 * 21 18 17 45 45 H 1.08998 * 113.61598 * 139.93871 * 22 15 14 46 46 H 1.09004 * 113.61823 * 270.76065 * 22 15 14 47 47 H 1.08995 * 109.47393 * 89.99941 * 24 23 7 48 48 H 1.09002 * 109.46882 * 210.00421 * 24 23 7 49 49 H 1.09000 * 109.46680 * 329.99661 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 1.7052 2.4847 -0.0006 5 8 0.6144 2.5526 -0.9211 6 14 1.1015 2.9093 1.7100 7 6 3.6379 0.8429 -0.0046 8 16 4.8357 2.1352 -0.0115 9 8 5.9946 1.6117 0.6226 10 8 4.1659 3.3054 0.4370 11 7 5.2507 2.4104 -1.5909 12 6 4.2383 2.8696 -2.5450 13 1 3.2756 3.0723 -2.0758 14 6 4.7260 4.0024 -3.4663 15 6 3.9655 3.2976 -4.6020 16 1 2.9280 3.6179 -4.6972 17 8 4.6645 3.3029 -5.8484 18 6 4.0627 4.1268 -6.8488 19 6 4.0107 5.5738 -6.3543 20 6 4.8903 4.0560 -8.1337 21 6 2.6422 3.6326 -7.1299 22 6 4.1371 1.9937 -3.8051 23 6 3.9751 -0.4478 0.0023 24 6 5.3861 -0.9771 0.0047 25 16 2.5210 -1.4372 0.0076 26 1 -0.3633 -1.0255 0.0674 27 1 -0.3633 0.5711 0.8544 28 1 -0.3633 0.4544 -0.9217 29 1 2.4776 3.1932 -0.2995 30 1 0.8512 2.3200 -1.8294 31 1 2.2439 2.9418 2.6583 32 1 0.4167 4.2269 1.6945 33 1 6.1642 2.2675 -1.8843 34 1 5.8068 4.0158 -3.6071 35 1 4.3195 4.9806 -3.2099 36 1 5.0227 5.9259 -6.1541 37 1 3.5513 6.2023 -7.1172 38 1 3.4208 5.6240 -5.4390 39 1 4.9270 3.0250 -8.4858 40 1 4.4314 4.6848 -8.8966 41 1 5.9025 4.4078 -7.9338 42 1 2.0523 3.6829 -6.2146 43 1 2.1830 4.2614 -7.8927 44 1 2.6792 2.6018 -7.4822 45 1 3.2557 1.3527 -3.8216 46 1 5.0559 1.4562 -4.0396 47 1 5.7266 -1.0991 1.0328 48 1 5.4135 -1.9407 -0.5040 49 1 6.0386 -0.2742 -0.5133 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_11572884_15065288.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:13:31 Heat of formation + Delta-G solvation = -91.614751 kcal Electronic energy + Delta-G solvation = -32762.501325 eV Core-core repulsion = 28525.125814 eV Total energy + Delta-G solvation = -4237.375512 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 376.126 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.98293 -40.29765 -38.83468 -38.53623 -37.21390 -37.12910 -34.60858 -34.03656 -33.08154 -30.81121 -28.42157 -28.34138 -28.02433 -26.65874 -25.84190 -25.01831 -23.27350 -21.36535 -21.15694 -20.62229 -20.05260 -19.04174 -18.65998 -18.15108 -17.96505 -17.33081 -16.82712 -16.40371 -16.20935 -16.05177 -15.72782 -15.45048 -15.25515 -15.09365 -14.75865 -14.53824 -14.34607 -14.27062 -14.10599 -13.99969 -13.73176 -13.59038 -13.50259 -13.41260 -13.33802 -13.26946 -13.19852 -12.92616 -12.85764 -12.78605 -12.71932 -12.66564 -12.48473 -12.35697 -12.34671 -11.94354 -11.78740 -11.73627 -11.41594 -11.26754 -10.95453 -10.56871 -10.38007 -9.95693 -9.39672 -5.01733 -0.92030 -0.42274 0.41503 0.71516 0.80974 1.34997 1.64632 1.84629 1.99586 2.47863 2.75154 3.08070 3.42948 3.43396 3.47576 3.63770 3.72345 3.76559 3.83982 3.91017 3.98410 4.03437 4.09723 4.12812 4.16688 4.24322 4.36165 4.49758 4.62575 4.63963 4.67883 4.70472 4.71305 4.76690 4.79962 4.85551 4.90082 4.92136 4.92735 4.94071 4.99734 5.03539 5.08043 5.16215 5.22350 5.29844 5.34345 5.38727 5.39679 5.86290 6.41086 6.66010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.157 4.157 3 C -0.099 4.099 4 C -0.077 4.077 5 O -0.531 6.531 6 Si 0.782 3.218 7 C -0.693 4.693 8 S 2.704 3.296 9 O -0.978 6.978 10 O -0.982 6.982 11 N -1.089 6.089 12 C 0.124 3.876 13 H 0.120 0.880 14 C -0.164 4.164 15 C 0.061 3.939 16 H 0.108 0.892 17 O -0.376 6.376 18 C 0.100 3.900 19 C -0.176 4.176 20 C -0.141 4.141 21 C -0.177 4.177 22 C -0.139 4.139 23 C -0.058 4.058 24 C -0.118 4.118 25 S 0.187 5.813 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.379 0.621 31 H -0.290 1.290 32 H -0.281 1.281 33 H 0.429 0.571 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.082 0.918 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.061 0.939 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.097 0.903 48 H 0.105 0.895 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.640 -4.196 -5.631 7.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.276 4.276 3 C -0.109 4.109 4 C -0.189 4.189 5 O -0.338 6.338 6 Si 0.686 3.314 7 C -0.795 4.795 8 S 2.795 3.205 9 O -0.968 6.968 10 O -0.971 6.971 11 N -0.850 5.850 12 C 0.017 3.983 13 H 0.137 0.863 14 C -0.204 4.204 15 C 0.003 3.997 16 H 0.126 0.874 17 O -0.296 6.296 18 C 0.061 3.939 19 C -0.233 4.233 20 C -0.198 4.198 21 C -0.235 4.235 22 C -0.178 4.178 23 C -0.179 4.179 24 C -0.176 4.176 25 S 0.453 5.547 26 H 0.097 0.903 27 H 0.110 0.890 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.228 0.772 31 H -0.217 1.217 32 H -0.207 1.207 33 H 0.267 0.733 34 H 0.112 0.888 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.101 0.899 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.111 0.889 46 H 0.114 0.886 47 H 0.116 0.884 48 H 0.123 0.877 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.900 -4.687 -3.671 7.117 hybrid contribution 1.528 1.548 -1.377 2.574 sum -2.372 -3.139 -5.048 6.401 Atomic orbital electron populations 1.20583 0.85040 1.03564 1.05161 1.24701 1.01588 0.94074 1.07205 1.18478 0.89995 0.97088 1.05363 1.25544 0.93797 0.93626 1.05902 1.86716 1.33538 1.91755 1.21742 0.93541 0.81517 0.82939 0.73419 1.29204 1.11658 1.13172 1.25466 1.01269 0.72813 0.73498 0.72900 1.93572 1.48471 1.80720 1.74002 1.93469 1.75702 1.47979 1.79989 1.55213 1.19704 1.82604 1.27510 1.22213 0.91410 0.96371 0.88322 0.86278 1.24033 1.02565 0.98572 0.95248 1.23507 0.96743 0.96946 0.82514 0.87399 1.88017 1.52109 1.67892 1.21568 1.21651 0.93391 0.90068 0.88777 1.22469 1.02519 0.96120 1.02225 1.21799 1.00012 1.02798 0.95161 1.22455 0.95841 1.02249 1.02925 1.23677 1.04515 0.96851 0.92771 1.24708 1.01808 0.95021 0.96368 1.20980 0.87694 1.03485 1.05423 1.84360 0.93965 1.07867 1.68479 0.90305 0.89045 0.88121 0.87882 0.77216 1.21693 1.20734 0.73299 0.88820 0.90189 0.92529 0.90761 0.91846 0.92197 0.89919 0.92515 0.91413 0.90652 0.92037 0.88884 0.88596 0.88439 0.87678 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.50 8.89 71.24 0.63 1.13 16 2 C -0.16 0.26 6.18 24.59 0.15 0.41 16 3 C -0.10 -0.15 4.16 -20.92 -0.09 -0.23 16 4 C -0.08 -0.22 1.86 71.24 0.13 -0.09 16 5 O -0.53 1.02 10.39 -148.98 -1.55 -0.53 16 6 Si 0.78 5.09 30.50 68.60 2.09 7.18 16 7 C -0.69 -1.94 5.81 21.22 0.12 -1.81 16 8 S 2.70 14.70 5.19 -56.49 -0.29 14.41 16 9 O -0.98 -9.66 15.36 -128.00 -1.97 -11.63 16 10 O -0.98 -10.75 13.45 -128.00 -1.72 -12.47 16 11 N -1.09 1.56 5.78 -166.95 -0.96 0.59 16 12 C 0.12 -0.42 4.38 45.58 0.20 -0.22 16 13 H 0.12 -0.55 6.01 -2.39 -0.01 -0.57 16 14 C -0.16 0.43 7.64 31.18 0.24 0.66 16 15 C 0.06 -0.21 2.80 31.12 0.09 -0.13 16 16 H 0.11 -0.68 5.59 -2.39 -0.01 -0.70 16 17 O -0.38 -0.29 10.00 -148.98 -1.49 -1.78 16 18 C 0.10 -0.17 1.12 -10.79 -0.01 -0.18 16 19 C -0.18 0.47 8.36 71.98 0.60 1.07 16 20 C -0.14 0.25 8.84 71.98 0.64 0.88 16 21 C -0.18 0.73 8.38 71.98 0.60 1.33 16 22 C -0.14 0.70 7.71 31.12 0.24 0.94 16 23 C -0.06 -0.03 6.49 24.59 0.16 0.13 16 24 C -0.12 0.20 9.11 71.24 0.65 0.85 16 25 S 0.19 -0.46 23.31 -56.49 -1.32 -1.77 16 26 H 0.08 -0.63 8.14 -2.39 -0.02 -0.65 16 27 H 0.09 -0.59 6.43 -2.39 -0.02 -0.60 16 28 H 0.10 -0.75 7.05 -2.39 -0.02 -0.77 16 29 H 0.10 0.48 3.28 -2.39 -0.01 0.47 16 30 H 0.38 -3.47 9.06 -74.06 -0.67 -4.15 16 31 H -0.29 -3.91 7.11 99.48 0.71 -3.21 16 32 H -0.28 -3.22 7.11 99.48 0.71 -2.52 16 33 H 0.43 -1.98 8.96 -96.74 -0.87 -2.84 16 34 H 0.09 -0.13 8.14 -2.39 -0.02 -0.15 16 35 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 36 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 37 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 38 H 0.06 -0.22 7.01 -2.38 -0.02 -0.24 16 39 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 40 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 41 H 0.06 -0.02 8.14 -2.38 -0.02 -0.04 16 42 H 0.07 -0.39 6.23 -2.38 -0.01 -0.40 16 43 H 0.07 -0.40 8.14 -2.38 -0.02 -0.42 16 44 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 45 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 46 H 0.10 -0.37 8.14 -2.38 -0.02 -0.39 16 47 H 0.10 -0.09 8.14 -2.39 -0.02 -0.11 16 48 H 0.10 -0.68 8.14 -2.39 -0.02 -0.70 16 49 H 0.09 -0.14 6.43 -2.39 -0.02 -0.15 16 Total: 0.00 -18.03 399.95 -3.36 -21.39 By element: Atomic # 1 Polarization: -19.62 SS G_CDS: -0.51 Total: -20.13 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: 4.36 Total: 4.74 kcal Atomic # 7 Polarization: 1.56 SS G_CDS: -0.96 Total: 0.59 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -6.72 Total: -26.40 kcal Atomic # 14 Polarization: 5.09 SS G_CDS: 2.09 Total: 7.18 kcal Atomic # 16 Polarization: 14.24 SS G_CDS: -1.61 Total: 12.63 kcal Total: -18.03 -3.36 -21.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_11572884_15065288.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.229 kcal (2) G-P(sol) polarization free energy of solvation -18.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds