Wall clock time and date at job start Mon Mar 8 2021 08:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46896 * 2 1 4 4 C 1.52997 * 109.46883 * 240.00178 * 2 1 3 5 5 O 1.42893 * 109.47276 * 119.99849 * 2 1 3 6 6 C 1.42904 * 113.99880 * 59.99995 * 5 2 1 7 7 H 1.08993 * 112.90761 * 341.24952 * 6 5 2 8 8 C 1.53784 * 113.61028 * 112.50016 * 6 5 2 9 9 C 1.53790 * 87.07677 * 139.98396 * 8 6 5 10 10 H 1.08993 * 113.69552 * 89.13039 * 9 8 6 11 11 N 1.46502 * 113.60919 * 220.01955 * 9 8 6 12 12 S 1.65607 * 119.99799 * 242.08094 * 11 9 8 13 13 O 1.42102 * 106.40256 * 309.89849 * 12 11 9 14 14 O 1.42099 * 106.39981 * 176.97632 * 12 11 9 15 15 C 1.76203 * 107.21447 * 63.43646 * 12 11 9 16 16 C 1.38221 * 119.99785 * 63.98339 * 15 12 11 17 17 C 1.50698 * 120.00127 * 359.97438 * 16 15 12 18 18 O 1.42902 * 109.47100 * 75.87728 * 17 16 15 19 19 Si 1.86299 * 109.47274 * 195.87877 * 17 16 15 20 20 C 1.38259 * 119.99575 * 180.02562 * 16 15 12 21 21 C 1.38206 * 120.00002 * 359.97438 * 20 16 15 22 22 C 1.38257 * 120.00408 * 359.97438 * 21 20 16 23 23 C 1.38213 * 119.99646 * 0.04206 * 22 21 20 24 24 C 1.53779 * 87.07997 * 334.56372 * 9 8 6 25 25 H 1.08999 * 109.46691 * 300.00177 * 1 2 3 26 26 H 1.08993 * 109.47280 * 60.00026 * 1 2 3 27 27 H 1.08997 * 109.46888 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46624 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46927 * 299.99873 * 3 2 1 30 30 H 1.08997 * 109.47081 * 60.00367 * 3 2 1 31 31 H 1.08997 * 109.47286 * 299.99668 * 4 2 1 32 32 H 1.09001 * 109.47587 * 59.99731 * 4 2 1 33 33 H 1.09000 * 109.47131 * 179.97438 * 4 2 1 34 34 H 1.08994 * 113.61698 * 25.44003 * 8 6 5 35 35 H 1.08992 * 113.61487 * 254.52474 * 8 6 5 36 36 H 0.97000 * 120.00365 * 62.08901 * 11 9 8 37 37 H 1.08998 * 109.46963 * 315.88075 * 17 16 15 38 38 H 0.96703 * 113.99584 * 65.14881 * 18 17 16 39 39 H 1.48501 * 109.99821 * 58.68171 * 19 17 16 40 40 H 1.48491 * 110.00232 * 180.02562 * 19 17 16 41 41 H 1.07999 * 119.99440 * 179.97438 * 20 16 15 42 42 H 1.08009 * 119.99774 * 179.69971 * 21 20 16 43 43 H 1.08002 * 120.00036 * 180.02562 * 22 21 20 44 44 H 1.08007 * 119.99491 * 179.97438 * 23 22 21 45 45 H 1.09004 * 113.61259 * 139.97968 * 24 9 8 46 46 H 1.09002 * 113.61870 * 270.88575 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0064 -0.6736 1.1667 6 6 1.5847 -2.0355 1.2645 7 1 0.7242 -2.2595 0.6341 8 6 2.7335 -3.0477 1.1212 9 6 2.0563 -3.8557 2.2409 10 1 1.3246 -4.5779 1.8788 11 7 3.0003 -4.4344 3.2001 12 16 3.0999 -6.0782 3.3749 13 8 1.7693 -6.5442 3.5530 14 8 4.1401 -6.3197 4.3124 15 6 3.6547 -6.7335 1.8362 16 6 4.9108 -6.4088 1.3595 17 6 5.8056 -5.4940 2.1554 18 8 6.3592 -6.2118 3.2600 19 14 7.1829 -4.8709 1.0666 20 6 5.3459 -6.9226 0.1519 21 6 4.5251 -7.7612 -0.5782 22 6 3.2690 -8.0869 -0.1009 23 6 2.8340 -7.5730 1.1062 24 6 1.4334 -2.5311 2.7123 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6766 -0.2074 -2.1393 33 1 3.1299 -0.7208 -1.2495 34 1 3.7072 -2.6456 1.4007 35 1 2.7463 -3.5604 0.1594 36 1 3.5669 -3.8549 3.7330 37 1 5.2245 -4.6493 2.5255 38 1 6.9532 -6.9306 3.0040 39 1 6.6193 -4.1499 -0.1029 40 1 8.0728 -3.9680 1.8399 41 1 6.3272 -6.6686 -0.2208 42 1 4.8631 -8.1587 -1.5239 43 1 2.6278 -8.7425 -0.6713 44 1 1.8526 -7.8270 1.4788 45 1 0.3966 -2.6266 3.0349 46 1 2.0517 -1.9876 3.4268 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_11572884_2726874.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:13:37 Heat of formation + Delta-G solvation = -87.891300 kcal Electronic energy + Delta-G solvation = -29754.244125 eV Core-core repulsion = 25738.953066 eV Total energy + Delta-G solvation = -4015.291059 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.138 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -41.04788 -40.72454 -38.73761 -38.25876 -37.37262 -36.67328 -34.63384 -33.16409 -32.78809 -32.46314 -28.52775 -28.47357 -27.02455 -26.76020 -25.04501 -24.45830 -22.83458 -21.39474 -21.12129 -20.40103 -19.25145 -18.30373 -18.02836 -17.99721 -17.32817 -16.92218 -16.68083 -16.15724 -16.01472 -15.95268 -15.72202 -15.52382 -15.19577 -15.03703 -14.64748 -14.38055 -14.24370 -13.96758 -13.72257 -13.55410 -13.51390 -13.37043 -13.20516 -12.97530 -12.93386 -12.87655 -12.81226 -12.76584 -12.73513 -12.43027 -12.25817 -12.16793 -11.96838 -11.86670 -11.57217 -11.37486 -10.61284 -10.52998 -10.48138 -10.41347 -10.12975 -5.17912 -0.60853 -0.28529 0.05250 1.08880 1.52135 1.84872 1.90404 2.33063 2.66339 2.79483 3.24135 3.34064 3.40472 3.43344 3.49055 3.64100 3.69950 3.77773 3.78836 3.79723 3.87060 3.97308 4.02365 4.08201 4.14472 4.25681 4.34201 4.48102 4.48658 4.55252 4.61153 4.66067 4.67991 4.68597 4.73859 4.80663 4.81979 4.88284 4.91190 4.96168 5.02711 5.03181 5.17677 5.20962 5.22484 5.29372 5.63461 5.84945 6.31451 6.58563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.104 3.896 3 C -0.139 4.139 4 C -0.177 4.177 5 O -0.358 6.358 6 C 0.063 3.937 7 H 0.096 0.904 8 C -0.172 4.172 9 C 0.127 3.873 10 H 0.120 0.880 11 N -1.105 6.105 12 S 2.682 3.318 13 O -0.961 6.961 14 O -0.921 6.921 15 C -0.655 4.655 16 C -0.014 4.014 17 C -0.106 4.106 18 O -0.500 6.500 19 Si 0.690 3.310 20 C -0.137 4.137 21 C -0.058 4.058 22 C -0.135 4.135 23 C -0.022 4.022 24 C -0.139 4.139 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.421 0.579 37 H 0.113 0.887 38 H 0.374 0.626 39 H -0.252 1.252 40 H -0.246 1.246 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.145 0.855 45 H 0.083 0.917 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.740 0.231 -6.986 7.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.065 3.935 3 C -0.196 4.196 4 C -0.234 4.234 5 O -0.278 6.278 6 C 0.004 3.996 7 H 0.114 0.886 8 C -0.212 4.212 9 C 0.019 3.981 10 H 0.137 0.863 11 N -0.864 5.864 12 S 2.770 3.230 13 O -0.951 6.951 14 O -0.910 6.910 15 C -0.741 4.741 16 C -0.015 4.015 17 C -0.217 4.217 18 O -0.304 6.304 19 Si 0.590 3.410 20 C -0.155 4.155 21 C -0.076 4.076 22 C -0.154 4.154 23 C -0.042 4.042 24 C -0.178 4.178 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.256 0.744 37 H 0.131 0.869 38 H 0.220 0.780 39 H -0.176 1.176 40 H -0.170 1.170 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.154 0.846 44 H 0.163 0.837 45 H 0.102 0.898 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.578 0.854 -6.212 6.297 hybrid contribution -0.280 0.127 -0.668 0.735 sum 0.299 0.981 -6.879 6.955 Atomic orbital electron populations 1.22473 0.95504 1.02522 1.03183 1.21557 0.93214 0.93263 0.85424 1.21771 1.01983 0.93179 1.02692 1.22473 1.02238 1.00775 0.97915 1.88043 1.73711 1.23080 1.42918 1.23400 0.96749 0.82039 0.97376 0.88638 1.24114 1.00369 0.97422 0.99259 1.22031 0.91353 0.95183 0.89548 0.86267 1.55644 1.51604 1.26136 1.52994 1.02447 0.74036 0.72500 0.73971 1.93591 1.37317 1.79509 1.84634 1.93743 1.56613 1.82831 1.57847 1.30826 1.03855 1.14422 1.24969 1.20021 0.92757 0.94670 0.94097 1.25443 1.03200 0.97086 0.95998 1.86880 1.65325 1.50042 1.28116 0.94726 0.81314 0.86198 0.78777 1.21107 1.00144 0.99360 0.94870 1.21487 0.93345 0.93843 0.98902 1.21393 0.96747 1.00758 0.96470 1.21083 0.98549 0.91530 0.93012 1.23607 1.02610 0.94541 0.97072 0.91496 0.91312 0.92163 0.91816 0.91014 0.91682 0.92284 0.91453 0.91777 0.88620 0.90661 0.74361 0.86926 0.78005 1.17608 1.17038 0.84578 0.84596 0.84617 0.83730 0.89818 0.88210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.20 8.38 37.16 0.31 0.51 16 2 C 0.10 -0.03 1.11 -90.62 -0.10 -0.13 16 3 C -0.14 0.07 8.84 37.16 0.33 0.40 16 4 C -0.18 0.18 8.38 37.16 0.31 0.49 16 5 O -0.36 -0.41 10.00 -35.23 -0.35 -0.76 16 6 C 0.06 -0.04 2.82 -25.92 -0.07 -0.12 16 7 H 0.10 -0.17 5.55 -51.93 -0.29 -0.46 16 8 C -0.17 0.18 7.71 -25.91 -0.20 -0.02 16 9 C 0.13 -0.11 4.41 -67.11 -0.30 -0.41 16 10 H 0.12 -0.19 7.82 -51.93 -0.41 -0.59 16 11 N -1.10 0.01 4.49 -4.20 -0.02 -0.01 16 12 S 2.68 7.20 4.94 -107.50 -0.53 6.67 16 13 O -0.96 -4.92 16.57 -57.17 -0.95 -5.86 16 14 O -0.92 -5.15 15.01 -66.41 -1.00 -6.14 16 15 C -0.65 -0.82 5.85 -39.58 -0.23 -1.05 16 16 C -0.01 0.00 5.27 -104.62 -0.55 -0.55 16 17 C -0.11 -0.02 1.87 36.00 0.07 0.05 16 18 O -0.50 -0.76 10.60 -57.74 -0.61 -1.37 16 19 Si 0.69 -1.02 29.85 -169.99 -5.07 -6.10 16 20 C -0.14 0.22 8.66 -39.59 -0.34 -0.12 16 21 C -0.06 0.12 10.05 -39.59 -0.40 -0.28 16 22 C -0.13 0.18 10.05 -39.58 -0.40 -0.22 16 23 C -0.02 -0.01 9.55 -39.59 -0.38 -0.39 16 24 C -0.14 0.12 7.70 -25.92 -0.20 -0.08 16 25 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 26 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 27 H 0.06 -0.09 6.25 -51.93 -0.32 -0.42 16 28 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 29 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 30 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 31 H 0.06 -0.08 7.02 -51.93 -0.36 -0.44 16 32 H 0.07 -0.11 8.14 -51.93 -0.42 -0.54 16 33 H 0.06 -0.02 8.14 -51.93 -0.42 -0.45 16 34 H 0.10 -0.05 8.14 -51.93 -0.42 -0.47 16 35 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 36 H 0.42 -0.54 8.67 -34.47 -0.30 -0.84 16 37 H 0.11 0.01 5.83 -51.93 -0.30 -0.30 16 38 H 0.37 -0.99 8.61 45.56 0.39 -0.59 16 39 H -0.25 -0.09 7.11 56.52 0.40 0.31 16 40 H -0.25 -0.40 7.11 56.52 0.40 0.01 16 41 H 0.14 -0.58 5.16 -52.49 -0.27 -0.85 16 42 H 0.14 -0.62 8.06 -52.48 -0.42 -1.04 16 43 H 0.14 -0.46 8.06 -52.49 -0.42 -0.89 16 44 H 0.14 -0.04 7.34 -52.48 -0.39 -0.42 16 45 H 0.08 -0.11 8.14 -51.93 -0.42 -0.53 16 46 H 0.10 -0.06 8.14 -51.93 -0.42 -0.48 16 LS Contribution 374.23 15.07 5.64 5.64 Total: 0.00 -9.83 374.23 -11.98 -21.81 By element: Atomic # 1 Polarization: -5.02 SS G_CDS: -6.94 Total: -11.96 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -2.15 Total: -1.91 kcal Atomic # 7 Polarization: 0.01 SS G_CDS: -0.02 Total: -0.01 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -2.91 Total: -14.14 kcal Atomic # 14 Polarization: -1.02 SS G_CDS: -5.07 Total: -6.10 kcal Atomic # 16 Polarization: 7.20 SS G_CDS: -0.53 Total: 6.67 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -9.83 -11.98 -21.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_11572884_2726874.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.079 kcal (2) G-P(sol) polarization free energy of solvation -9.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds