Wall clock time and date at job start Mon Mar 8 2021 08:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46896 * 2 1 4 4 C 1.52997 * 109.46883 * 240.00178 * 2 1 3 5 5 O 1.42893 * 109.47276 * 119.99849 * 2 1 3 6 6 C 1.42904 * 113.99880 * 59.99995 * 5 2 1 7 7 H 1.08993 * 112.90761 * 341.24952 * 6 5 2 8 8 C 1.53784 * 113.61028 * 112.50016 * 6 5 2 9 9 C 1.53790 * 87.07677 * 139.98396 * 8 6 5 10 10 H 1.08993 * 113.69552 * 89.13039 * 9 8 6 11 11 N 1.46502 * 113.60919 * 220.01955 * 9 8 6 12 12 S 1.65607 * 119.99799 * 242.08094 * 11 9 8 13 13 O 1.42102 * 106.40256 * 309.89849 * 12 11 9 14 14 O 1.42099 * 106.39981 * 176.97632 * 12 11 9 15 15 C 1.76203 * 107.21447 * 63.43646 * 12 11 9 16 16 C 1.38221 * 119.99785 * 63.98339 * 15 12 11 17 17 C 1.50698 * 120.00127 * 359.97438 * 16 15 12 18 18 O 1.42902 * 109.47100 * 75.87728 * 17 16 15 19 19 Si 1.86299 * 109.47274 * 195.87877 * 17 16 15 20 20 C 1.38259 * 119.99575 * 180.02562 * 16 15 12 21 21 C 1.38206 * 120.00002 * 359.97438 * 20 16 15 22 22 C 1.38257 * 120.00408 * 359.97438 * 21 20 16 23 23 C 1.38213 * 119.99646 * 0.04206 * 22 21 20 24 24 C 1.53779 * 87.07997 * 334.56372 * 9 8 6 25 25 H 1.08999 * 109.46691 * 300.00177 * 1 2 3 26 26 H 1.08993 * 109.47280 * 60.00026 * 1 2 3 27 27 H 1.08997 * 109.46888 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46624 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46927 * 299.99873 * 3 2 1 30 30 H 1.08997 * 109.47081 * 60.00367 * 3 2 1 31 31 H 1.08997 * 109.47286 * 299.99668 * 4 2 1 32 32 H 1.09001 * 109.47587 * 59.99731 * 4 2 1 33 33 H 1.09000 * 109.47131 * 179.97438 * 4 2 1 34 34 H 1.08994 * 113.61698 * 25.44003 * 8 6 5 35 35 H 1.08992 * 113.61487 * 254.52474 * 8 6 5 36 36 H 0.97000 * 120.00365 * 62.08901 * 11 9 8 37 37 H 1.08998 * 109.46963 * 315.88075 * 17 16 15 38 38 H 0.96703 * 113.99584 * 65.14881 * 18 17 16 39 39 H 1.48501 * 109.99821 * 58.68171 * 19 17 16 40 40 H 1.48491 * 110.00232 * 180.02562 * 19 17 16 41 41 H 1.07999 * 119.99440 * 179.97438 * 20 16 15 42 42 H 1.08009 * 119.99774 * 179.69971 * 21 20 16 43 43 H 1.08002 * 120.00036 * 180.02562 * 22 21 20 44 44 H 1.08007 * 119.99491 * 179.97438 * 23 22 21 45 45 H 1.09004 * 113.61259 * 139.97968 * 24 9 8 46 46 H 1.09002 * 113.61870 * 270.88575 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0064 -0.6736 1.1667 6 6 1.5847 -2.0355 1.2645 7 1 0.7242 -2.2595 0.6341 8 6 2.7335 -3.0477 1.1212 9 6 2.0563 -3.8557 2.2409 10 1 1.3246 -4.5779 1.8788 11 7 3.0003 -4.4344 3.2001 12 16 3.0999 -6.0782 3.3749 13 8 1.7693 -6.5442 3.5530 14 8 4.1401 -6.3197 4.3124 15 6 3.6547 -6.7335 1.8362 16 6 4.9108 -6.4088 1.3595 17 6 5.8056 -5.4940 2.1554 18 8 6.3592 -6.2118 3.2600 19 14 7.1829 -4.8709 1.0666 20 6 5.3459 -6.9226 0.1519 21 6 4.5251 -7.7612 -0.5782 22 6 3.2690 -8.0869 -0.1009 23 6 2.8340 -7.5730 1.1062 24 6 1.4334 -2.5311 2.7123 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6766 -0.2074 -2.1393 33 1 3.1299 -0.7208 -1.2495 34 1 3.7072 -2.6456 1.4007 35 1 2.7463 -3.5604 0.1594 36 1 3.5669 -3.8549 3.7330 37 1 5.2245 -4.6493 2.5255 38 1 6.9532 -6.9306 3.0040 39 1 6.6193 -4.1499 -0.1029 40 1 8.0728 -3.9680 1.8399 41 1 6.3272 -6.6686 -0.2208 42 1 4.8631 -8.1587 -1.5239 43 1 2.6278 -8.7425 -0.6713 44 1 1.8526 -7.8270 1.4788 45 1 0.3966 -2.6266 3.0349 46 1 2.0517 -1.9876 3.4268 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_11572884_2726874.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:13:36 Heat of formation + Delta-G solvation = -88.781327 kcal Electronic energy + Delta-G solvation = -29754.282720 eV Core-core repulsion = 25738.953066 eV Total energy + Delta-G solvation = -4015.329654 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.138 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.00827 -40.64077 -38.73051 -38.45449 -37.44066 -36.97619 -34.63104 -33.16186 -32.73093 -32.37255 -28.46073 -28.37558 -26.97426 -26.70261 -25.02271 -24.38516 -22.76655 -21.36356 -21.12444 -20.46323 -19.27732 -18.43686 -18.04546 -17.98677 -17.31988 -16.86721 -16.68099 -16.13953 -15.98505 -15.95509 -15.70550 -15.52240 -15.21124 -14.97665 -14.59673 -14.34293 -14.24458 -13.89910 -13.71699 -13.54069 -13.48066 -13.33351 -13.23109 -13.20441 -13.11359 -12.88894 -12.78461 -12.75673 -12.70491 -12.37753 -12.23576 -12.20942 -11.93987 -11.84848 -11.57319 -11.31064 -10.58778 -10.48971 -10.42558 -10.39941 -10.03748 -5.08589 -0.72876 -0.26750 0.15609 1.16016 1.59416 1.83314 1.90765 2.40529 2.64293 2.73044 3.25447 3.38641 3.43365 3.46265 3.54049 3.70535 3.77272 3.84436 3.87283 3.93695 3.98723 4.05331 4.10040 4.17719 4.25379 4.35446 4.38732 4.59329 4.60175 4.64017 4.66958 4.71287 4.75684 4.80818 4.81427 4.88449 4.89309 4.95008 4.99007 5.02066 5.12565 5.18722 5.26479 5.30534 5.31453 5.35209 5.77781 5.85496 6.36933 6.76981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.098 3.902 3 C -0.140 4.140 4 C -0.174 4.174 5 O -0.378 6.378 6 C 0.063 3.937 7 H 0.109 0.891 8 C -0.166 4.166 9 C 0.125 3.875 10 H 0.127 0.873 11 N -1.099 6.099 12 S 2.689 3.311 13 O -0.993 6.993 14 O -0.958 6.958 15 C -0.664 4.664 16 C -0.024 4.024 17 C -0.126 4.126 18 O -0.525 6.525 19 Si 0.787 3.213 20 C -0.138 4.138 21 C -0.052 4.052 22 C -0.136 4.136 23 C -0.039 4.039 24 C -0.141 4.141 25 H 0.058 0.942 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.425 0.575 37 H 0.105 0.895 38 H 0.388 0.612 39 H -0.269 1.269 40 H -0.293 1.293 41 H 0.165 0.835 42 H 0.169 0.831 43 H 0.158 0.842 44 H 0.142 0.858 45 H 0.088 0.912 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.980 -0.324 -9.386 9.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.059 3.941 3 C -0.197 4.197 4 C -0.231 4.231 5 O -0.298 6.298 6 C 0.004 3.996 7 H 0.126 0.874 8 C -0.206 4.206 9 C 0.017 3.983 10 H 0.144 0.856 11 N -0.859 5.859 12 S 2.782 3.218 13 O -0.983 6.983 14 O -0.948 6.948 15 C -0.754 4.754 16 C -0.025 4.025 17 C -0.235 4.235 18 O -0.331 6.331 19 Si 0.689 3.311 20 C -0.156 4.156 21 C -0.070 4.070 22 C -0.155 4.155 23 C -0.059 4.059 24 C -0.181 4.181 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.262 0.738 37 H 0.123 0.877 38 H 0.237 0.763 39 H -0.195 1.195 40 H -0.221 1.221 41 H 0.181 0.819 42 H 0.186 0.814 43 H 0.176 0.824 44 H 0.160 0.840 45 H 0.107 0.893 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.791 0.286 -8.575 8.616 hybrid contribution -0.346 0.328 0.063 0.481 sum 0.445 0.614 -8.512 8.546 Atomic orbital electron populations 1.22457 0.94849 1.02939 1.03251 1.21689 0.93779 0.93250 0.85362 1.21798 1.01539 0.93370 1.03005 1.22447 1.01708 1.01135 0.97839 1.88020 1.74173 1.23899 1.43718 1.23487 0.97231 0.81453 0.97420 0.87358 1.24059 0.99914 0.97172 0.99476 1.22161 0.91356 0.95272 0.89472 0.85569 1.55423 1.51944 1.25180 1.53370 1.01786 0.72881 0.72838 0.74308 1.93540 1.38785 1.80390 1.85632 1.93689 1.57360 1.83690 1.60028 1.30462 1.04913 1.15750 1.24234 1.20098 0.92313 0.95157 0.94965 1.25798 1.04373 0.97091 0.96262 1.86838 1.65971 1.50903 1.29431 0.93661 0.77596 0.83917 0.75879 1.21456 1.01380 0.98779 0.93936 1.21919 0.92616 0.92728 0.99750 1.21711 0.97542 1.00518 0.95736 1.21218 0.98613 0.92031 0.94006 1.23630 1.02803 0.94429 0.97221 0.92266 0.90393 0.91574 0.92520 0.89706 0.92369 0.91747 0.90534 0.92568 0.89333 0.89694 0.73806 0.87717 0.76271 1.19512 1.22107 0.81854 0.81370 0.82444 0.84029 0.89307 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.45 8.38 71.98 0.60 1.05 16 2 C 0.10 -0.05 1.11 -10.79 -0.01 -0.06 16 3 C -0.14 0.10 8.84 71.98 0.64 0.74 16 4 C -0.17 0.44 8.38 71.98 0.60 1.04 16 5 O -0.38 -1.07 10.00 -148.98 -1.49 -2.56 16 6 C 0.06 -0.07 2.82 31.12 0.09 0.02 16 7 H 0.11 -0.44 5.55 -2.39 -0.01 -0.45 16 8 C -0.17 0.29 7.71 31.12 0.24 0.53 16 9 C 0.12 -0.10 4.41 45.52 0.20 0.10 16 10 H 0.13 -0.29 7.82 -2.39 -0.02 -0.31 16 11 N -1.10 -1.90 4.49 -167.19 -0.75 -2.65 16 12 S 2.69 19.90 4.94 -56.49 -0.28 19.62 16 13 O -0.99 -12.40 16.57 -128.00 -2.12 -14.52 16 14 O -0.96 -13.13 15.01 -119.17 -1.79 -14.92 16 15 C -0.66 -2.16 5.85 22.27 0.13 -2.03 16 16 C -0.02 0.00 5.27 -19.86 -0.10 -0.11 16 17 C -0.13 -0.12 1.87 71.24 0.13 0.01 16 18 O -0.53 -2.23 10.60 -127.45 -1.35 -3.58 16 19 Si 0.79 -2.62 29.85 68.60 2.05 -0.57 16 20 C -0.14 0.70 8.66 22.27 0.19 0.90 16 21 C -0.05 0.35 10.05 22.27 0.22 0.58 16 22 C -0.14 0.57 10.05 22.27 0.22 0.79 16 23 C -0.04 -0.04 9.55 22.27 0.21 0.18 16 24 C -0.14 0.11 7.70 31.12 0.24 0.35 16 25 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 26 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 27 H 0.07 -0.25 6.25 -2.39 -0.01 -0.27 16 28 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 29 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 30 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 31 H 0.06 -0.23 7.02 -2.39 -0.02 -0.25 16 32 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 33 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 34 H 0.09 -0.02 8.14 -2.39 -0.02 -0.03 16 35 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 36 H 0.42 -0.17 8.67 -96.74 -0.84 -1.01 16 37 H 0.11 0.17 5.83 -2.39 -0.01 0.16 16 38 H 0.39 -1.80 8.61 -74.06 -0.64 -2.43 16 39 H -0.27 0.11 7.11 99.48 0.71 0.82 16 40 H -0.29 -1.28 7.11 99.48 0.71 -0.57 16 41 H 0.16 -1.85 5.16 -2.91 -0.02 -1.86 16 42 H 0.17 -2.22 8.06 -2.91 -0.02 -2.25 16 43 H 0.16 -1.42 8.06 -2.91 -0.02 -1.44 16 44 H 0.14 0.09 7.34 -2.91 -0.02 0.07 16 45 H 0.09 -0.17 8.14 -2.38 -0.02 -0.19 16 46 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 Total: 0.00 -24.06 374.23 -2.56 -26.62 By element: Atomic # 1 Polarization: -11.08 SS G_CDS: -0.44 Total: -11.51 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 3.61 Total: 4.09 kcal Atomic # 7 Polarization: -1.90 SS G_CDS: -0.75 Total: -2.65 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -6.75 Total: -35.59 kcal Atomic # 14 Polarization: -2.62 SS G_CDS: 2.05 Total: -0.57 kcal Atomic # 16 Polarization: 19.90 SS G_CDS: -0.28 Total: 19.62 kcal Total: -24.06 -2.56 -26.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_11572884_2726874.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.160 kcal (2) G-P(sol) polarization free energy of solvation -24.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds