Wall clock time and date at job start Mon Mar 8 2021 08:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86300 * 109.47217 * 2 1 4 4 C 1.50703 * 109.47029 * 120.00247 * 2 1 3 5 5 C 1.38470 * 119.95327 * 195.01919 * 4 2 1 6 6 F 1.35102 * 120.00451 * 0.02562 * 5 4 2 7 7 C 1.38391 * 120.00572 * 179.76833 * 5 4 2 8 8 C 1.38676 * 119.91205 * 0.46010 * 7 5 4 9 9 O 1.35904 * 120.03948 * 179.79246 * 8 7 5 10 10 S 1.52197 * 113.99890 * 269.72675 * 9 8 7 11 11 O 1.42096 * 104.27966 * 318.92918 * 10 9 8 12 12 O 1.42098 * 104.27829 * 191.07019 * 10 9 8 13 13 C 1.81402 * 104.44958 * 74.99963 * 10 9 8 14 14 H 1.08994 * 112.90847 * 311.24694 * 13 10 9 15 15 C 1.53777 * 113.61305 * 82.50329 * 13 10 9 16 16 C 1.53785 * 87.08241 * 139.97895 * 15 13 10 17 17 H 1.09002 * 113.61570 * 220.01842 * 16 15 13 18 18 O 1.42901 * 113.69063 * 89.12535 * 16 15 13 19 19 C 1.42898 * 114.00258 * 110.93650 * 18 16 15 20 20 C 1.50698 * 109.47497 * 180.02562 * 19 18 16 21 21 C 1.38234 * 119.99715 * 269.73208 * 20 19 18 22 22 C 1.38237 * 119.99699 * 179.78774 * 21 20 19 23 23 C 1.38230 * 120.00038 * 0.43635 * 22 21 20 24 24 C 1.38236 * 120.00299 * 359.81037 * 23 22 21 25 25 C 1.38233 * 120.00232 * 89.99756 * 20 19 18 26 26 C 1.53781 * 87.08241 * 334.56547 * 16 15 13 27 27 C 1.38763 * 119.91735 * 359.52097 * 8 7 5 28 28 C 1.38133 * 119.99745 * 0.24931 * 27 8 7 29 29 H 0.96701 * 113.99787 * 300.00229 * 1 2 3 30 30 H 1.09005 * 109.46966 * 240.00125 * 2 1 3 31 31 H 1.48496 * 110.00198 * 300.00090 * 3 2 1 32 32 H 1.48498 * 109.99859 * 61.31948 * 3 2 1 33 33 H 1.07996 * 120.04408 * 180.25436 * 7 5 4 34 34 H 1.08999 * 113.61947 * 25.43320 * 15 13 10 35 35 H 1.08997 * 113.61348 * 254.52535 * 15 13 10 36 36 H 1.09002 * 109.46781 * 300.00325 * 19 18 16 37 37 H 1.09002 * 109.46817 * 60.00169 * 19 18 16 38 38 H 1.08002 * 120.00569 * 359.97438 * 21 20 19 39 39 H 1.08007 * 120.00162 * 180.26947 * 22 21 20 40 40 H 1.08005 * 120.00012 * 179.83953 * 23 22 21 41 41 H 1.07997 * 120.00635 * 180.02562 * 24 23 22 42 42 H 1.08003 * 119.99687 * 359.97438 * 25 20 19 43 43 H 1.09000 * 113.61578 * 139.97748 * 26 16 15 44 44 H 1.08997 * 113.61673 * 270.88717 * 26 16 15 45 45 H 1.08003 * 120.00052 * 180.23312 * 27 8 7 46 46 H 1.07993 * 119.96112 * 179.97438 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 3.2543 -0.5740 1.6159 6 9 4.0937 0.1960 0.8895 7 6 3.7155 -1.2221 2.7484 8 6 2.8536 -2.0155 3.4905 9 8 3.3049 -2.6565 4.6007 10 16 3.8496 -4.0519 4.3313 11 8 2.9387 -4.6087 3.3936 12 8 4.0100 -4.6210 5.6235 13 6 5.4648 -3.7656 3.5569 14 1 5.4230 -3.0413 2.7436 15 6 6.5925 -3.4938 4.5665 16 6 7.4940 -4.3635 3.6745 17 1 8.1616 -5.0182 4.2347 18 8 8.1675 -3.6297 2.6498 19 6 9.5802 -3.5286 2.8400 20 6 10.1843 -2.7386 1.7078 21 6 10.6225 -3.3878 0.5688 22 6 11.1727 -2.6626 -0.4716 23 6 11.2929 -1.2894 -0.3692 24 6 10.8594 -0.6407 0.7719 25 6 10.3053 -1.3654 1.8105 26 6 6.2108 -5.0599 3.1915 27 6 1.5284 -2.1495 3.1014 28 6 1.0706 -1.4972 1.9731 29 1 -0.3933 0.4417 0.7651 30 1 1.7923 -0.5138 -0.8900 31 1 1.5615 2.4679 -1.2084 32 1 1.5879 2.4585 1.2242 33 1 4.7462 -1.1129 3.0519 34 1 6.4092 -3.9224 5.5518 35 1 6.8980 -2.4484 4.6088 36 1 9.7844 -3.0239 3.7843 37 1 10.0164 -4.5273 2.8600 38 1 10.5323 -4.4612 0.4904 39 1 11.5111 -3.1693 -1.3634 40 1 11.7251 -0.7231 -1.1810 41 1 10.9529 0.4322 0.8518 42 1 9.9665 -0.8587 2.7021 43 1 6.2082 -5.2787 2.1237 44 1 5.9231 -5.9166 3.8008 45 1 0.8550 -2.7641 3.6805 46 1 0.0393 -1.6023 1.6705 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_11680700_15608174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:14:24 Heat of formation + Delta-G solvation = -123.911293 kcal Electronic energy + Delta-G solvation = -35036.587333 eV Core-core repulsion = 30095.194749 eV Total energy + Delta-G solvation = -4941.392584 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 395.101 amu Computer time = 2.74 seconds Orbital eigenvalues (eV) -50.48152 -42.33253 -40.90425 -40.03812 -39.87704 -38.35138 -37.66167 -37.23062 -37.12338 -32.77828 -32.44608 -32.10141 -31.86874 -27.65054 -27.34515 -27.12428 -26.60337 -24.38826 -23.83480 -23.55780 -22.35971 -22.01029 -21.15044 -19.76750 -19.31401 -19.04421 -18.68905 -18.16950 -17.78230 -17.50005 -17.44027 -17.22578 -16.92755 -16.73747 -16.64072 -16.16558 -16.04317 -15.84996 -15.59819 -15.41234 -15.34404 -14.82696 -14.45185 -14.38363 -14.26930 -14.17849 -14.03589 -13.92391 -13.70713 -13.62603 -13.58784 -13.37967 -13.32061 -13.23603 -13.16027 -12.79738 -12.62746 -12.28221 -12.15488 -12.02093 -11.97919 -11.87264 -11.34217 -11.10766 -10.71906 -10.34553 -9.88463 -9.88144 -9.82992 -4.84688 -1.20246 -0.36014 -0.29621 0.26372 0.44229 0.83696 1.12753 1.53136 1.84487 2.04749 2.28564 2.41132 2.62816 2.72834 2.85680 2.93419 3.02932 3.12246 3.18756 3.30244 3.34798 3.50949 3.63278 3.73970 3.79773 3.81931 3.92050 4.00302 4.04649 4.17689 4.21039 4.22054 4.22986 4.29459 4.43958 4.47217 4.54280 4.55155 4.59554 4.60705 4.64370 4.68108 4.73142 4.80442 4.88401 4.98630 5.06183 5.36844 5.47897 5.56020 5.57862 5.99193 6.03709 6.17727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.526 6.526 2 C -0.076 4.076 3 Si 0.677 3.323 4 C -0.130 4.130 5 C 0.117 3.883 6 F -0.098 7.098 7 C -0.158 4.158 8 C 0.093 3.907 9 O -0.658 6.658 10 S 2.592 3.408 11 O -0.945 6.945 12 O -0.918 6.918 13 C -0.639 4.639 14 H 0.158 0.842 15 C -0.131 4.131 16 C 0.078 3.922 17 H 0.090 0.910 18 O -0.356 6.356 19 C 0.101 3.899 20 C -0.095 4.095 21 C -0.098 4.098 22 C -0.123 4.123 23 C -0.112 4.112 24 C -0.123 4.123 25 C -0.098 4.098 26 C -0.106 4.106 27 C -0.091 4.091 28 C -0.065 4.065 29 H 0.378 0.622 30 H 0.133 0.867 31 H -0.246 1.246 32 H -0.254 1.254 33 H 0.159 0.841 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.102 0.898 44 H 0.106 0.894 45 H 0.151 0.849 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.335 1.411 -0.745 4.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.332 6.332 2 C -0.185 4.185 3 Si 0.575 3.425 4 C -0.132 4.132 5 C 0.097 3.903 6 F -0.077 7.077 7 C -0.178 4.178 8 C 0.051 3.949 9 O -0.617 6.617 10 S 2.688 3.312 11 O -0.943 6.943 12 O -0.917 6.917 13 C -0.747 4.747 14 H 0.176 0.824 15 C -0.170 4.170 16 C 0.019 3.981 17 H 0.107 0.893 18 O -0.274 6.274 19 C 0.025 3.975 20 C -0.095 4.095 21 C -0.116 4.116 22 C -0.141 4.141 23 C -0.130 4.130 24 C -0.141 4.141 25 C -0.116 4.116 26 C -0.145 4.145 27 C -0.111 4.111 28 C -0.083 4.083 29 H 0.226 0.774 30 H 0.150 0.850 31 H -0.171 1.171 32 H -0.178 1.178 33 H 0.177 0.823 34 H 0.132 0.868 35 H 0.114 0.886 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.169 0.831 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.574 1.786 -0.983 4.114 hybrid contribution -0.168 -0.060 0.467 0.500 sum 3.406 1.726 -0.516 3.853 Atomic orbital electron populations 1.86619 1.16949 1.80082 1.49562 1.25000 0.84631 1.11314 0.97543 0.94616 0.92865 0.73350 0.81672 1.20677 0.92715 1.00188 0.99586 1.16847 0.87402 0.94671 0.91378 1.91227 1.69545 1.71147 1.75752 1.21207 1.02131 0.99319 0.95189 1.17631 0.93634 0.98780 0.84823 1.85741 1.80825 1.51697 1.43441 1.05658 0.76878 0.73364 0.75260 1.93666 1.58706 1.76325 1.65606 1.93660 1.86703 1.73468 1.37824 1.32201 1.20022 1.09545 1.12915 0.82388 1.23271 0.93072 1.03744 0.96895 1.22816 0.92997 0.93007 0.89298 0.89254 1.87974 1.19162 1.74214 1.46098 1.21445 0.80825 0.99012 0.96169 1.19535 1.00354 0.93943 0.95715 1.21085 0.97660 1.00081 0.92806 1.21203 0.99660 0.94377 0.98851 1.21272 0.99006 0.94754 0.97928 1.21197 0.98930 1.00165 0.93762 1.21072 0.98311 0.93219 0.99047 1.22852 0.93919 0.92755 1.04963 1.21452 0.93861 0.98805 0.96991 1.20836 1.01164 0.93689 0.92620 0.77364 0.84967 1.17084 1.17802 0.82294 0.86765 0.88624 0.91971 0.91914 0.85908 0.85737 0.85799 0.85714 0.85938 0.87922 0.87617 0.83099 0.82444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.25 11.64 -35.23 -0.41 -0.16 16 2 C -0.08 0.08 2.97 36.01 0.11 0.18 16 3 Si 0.68 -0.47 29.58 -169.99 -5.03 -5.50 16 4 C -0.13 0.10 5.13 -104.53 -0.54 -0.44 16 5 C 0.12 -0.09 6.66 -39.44 -0.26 -0.35 16 6 F -0.10 0.14 13.71 2.25 0.03 0.17 16 7 C -0.16 0.13 8.49 -39.36 -0.33 -0.20 16 8 C 0.09 0.07 4.79 -39.23 -0.19 -0.12 16 9 O -0.66 -0.88 10.05 -51.76 -0.52 -1.40 16 10 S 2.59 3.93 5.14 -107.50 -0.55 3.38 16 11 O -0.94 -3.50 16.26 -67.04 -1.09 -4.59 16 12 O -0.92 -3.89 17.27 -67.04 -1.16 -5.05 16 13 C -0.64 0.80 3.97 -25.91 -0.10 0.69 16 14 H 0.16 -0.36 6.13 -51.93 -0.32 -0.68 16 15 C -0.13 0.27 7.47 -25.92 -0.19 0.07 16 16 C 0.08 -0.14 4.36 -25.92 -0.11 -0.25 16 17 H 0.09 -0.31 7.88 -51.93 -0.41 -0.72 16 18 O -0.36 0.03 10.26 -35.23 -0.36 -0.33 16 19 C 0.10 -0.12 5.91 36.00 0.21 0.09 16 20 C -0.10 -0.03 5.51 -104.63 -0.58 -0.60 16 21 C -0.10 -0.03 9.70 -39.58 -0.38 -0.41 16 22 C -0.12 -0.01 10.05 -39.58 -0.40 -0.41 16 23 C -0.11 0.01 10.05 -39.59 -0.40 -0.39 16 24 C -0.12 0.01 10.05 -39.58 -0.40 -0.39 16 25 C -0.10 -0.01 9.70 -39.58 -0.38 -0.39 16 26 C -0.11 0.18 7.50 -25.91 -0.19 -0.01 16 27 C -0.09 -0.02 9.05 -39.43 -0.36 -0.38 16 28 C -0.07 0.06 9.23 -39.62 -0.37 -0.31 16 29 H 0.38 -1.38 8.43 45.56 0.38 -1.00 16 30 H 0.13 -0.23 7.96 -51.93 -0.41 -0.64 16 31 H -0.25 -0.51 7.11 56.52 0.40 -0.11 16 32 H -0.25 -0.34 7.11 56.52 0.40 0.06 16 33 H 0.16 -0.50 7.28 -52.49 -0.38 -0.89 16 34 H 0.11 -0.28 7.43 -51.93 -0.39 -0.66 16 35 H 0.10 -0.28 8.14 -51.93 -0.42 -0.70 16 36 H 0.06 -0.15 8.09 -51.93 -0.42 -0.57 16 37 H 0.06 -0.14 8.08 -51.93 -0.42 -0.56 16 38 H 0.12 -0.14 8.06 -52.49 -0.42 -0.56 16 39 H 0.12 -0.20 8.06 -52.48 -0.42 -0.62 16 40 H 0.12 -0.22 8.06 -52.48 -0.42 -0.64 16 41 H 0.12 -0.23 8.06 -52.49 -0.42 -0.65 16 42 H 0.12 -0.18 8.06 -52.48 -0.42 -0.60 16 43 H 0.10 -0.19 8.14 -51.93 -0.42 -0.61 16 44 H 0.11 -0.33 8.10 -51.93 -0.42 -0.75 16 45 H 0.15 -0.12 8.06 -52.48 -0.42 -0.54 16 46 H 0.16 -0.42 7.08 -52.49 -0.37 -0.79 16 LS Contribution 399.78 15.07 6.02 6.02 Total: 0.00 -9.62 399.78 -13.67 -23.29 By element: Atomic # 1 Polarization: -6.50 SS G_CDS: -5.74 Total: -12.24 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -4.87 Total: -3.61 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -3.54 Total: -11.52 kcal Atomic # 9 Polarization: 0.14 SS G_CDS: 0.03 Total: 0.17 kcal Atomic # 14 Polarization: -0.47 SS G_CDS: -5.03 Total: -5.50 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -0.55 Total: 3.38 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -9.62 -13.67 -23.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_11680700_15608174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.625 kcal (2) G-P(sol) polarization free energy of solvation -9.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.74 seconds