Wall clock time and date at job start Mon Mar 8 2021 08:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86300 * 109.47217 * 2 1 4 4 C 1.50703 * 109.47029 * 120.00247 * 2 1 3 5 5 C 1.38470 * 119.95327 * 195.01919 * 4 2 1 6 6 F 1.35102 * 120.00451 * 0.02562 * 5 4 2 7 7 C 1.38391 * 120.00572 * 179.76833 * 5 4 2 8 8 C 1.38676 * 119.91205 * 0.46010 * 7 5 4 9 9 O 1.35904 * 120.03948 * 179.79246 * 8 7 5 10 10 S 1.52197 * 113.99890 * 269.72675 * 9 8 7 11 11 O 1.42096 * 104.27966 * 318.92918 * 10 9 8 12 12 O 1.42098 * 104.27829 * 191.07019 * 10 9 8 13 13 C 1.81402 * 104.44958 * 74.99963 * 10 9 8 14 14 H 1.08994 * 112.90847 * 311.24694 * 13 10 9 15 15 C 1.53777 * 113.61305 * 82.50329 * 13 10 9 16 16 C 1.53785 * 87.08241 * 139.97895 * 15 13 10 17 17 H 1.09002 * 113.61570 * 220.01842 * 16 15 13 18 18 O 1.42901 * 113.69063 * 89.12535 * 16 15 13 19 19 C 1.42898 * 114.00258 * 110.93650 * 18 16 15 20 20 C 1.50698 * 109.47497 * 180.02562 * 19 18 16 21 21 C 1.38234 * 119.99715 * 269.73208 * 20 19 18 22 22 C 1.38237 * 119.99699 * 179.78774 * 21 20 19 23 23 C 1.38230 * 120.00038 * 0.43635 * 22 21 20 24 24 C 1.38236 * 120.00299 * 359.81037 * 23 22 21 25 25 C 1.38233 * 120.00232 * 89.99756 * 20 19 18 26 26 C 1.53781 * 87.08241 * 334.56547 * 16 15 13 27 27 C 1.38763 * 119.91735 * 359.52097 * 8 7 5 28 28 C 1.38133 * 119.99745 * 0.24931 * 27 8 7 29 29 H 0.96701 * 113.99787 * 300.00229 * 1 2 3 30 30 H 1.09005 * 109.46966 * 240.00125 * 2 1 3 31 31 H 1.48496 * 110.00198 * 300.00090 * 3 2 1 32 32 H 1.48498 * 109.99859 * 61.31948 * 3 2 1 33 33 H 1.07996 * 120.04408 * 180.25436 * 7 5 4 34 34 H 1.08999 * 113.61947 * 25.43320 * 15 13 10 35 35 H 1.08997 * 113.61348 * 254.52535 * 15 13 10 36 36 H 1.09002 * 109.46781 * 300.00325 * 19 18 16 37 37 H 1.09002 * 109.46817 * 60.00169 * 19 18 16 38 38 H 1.08002 * 120.00569 * 359.97438 * 21 20 19 39 39 H 1.08007 * 120.00162 * 180.26947 * 22 21 20 40 40 H 1.08005 * 120.00012 * 179.83953 * 23 22 21 41 41 H 1.07997 * 120.00635 * 180.02562 * 24 23 22 42 42 H 1.08003 * 119.99687 * 359.97438 * 25 20 19 43 43 H 1.09000 * 113.61578 * 139.97748 * 26 16 15 44 44 H 1.08997 * 113.61673 * 270.88717 * 26 16 15 45 45 H 1.08003 * 120.00052 * 180.23312 * 27 8 7 46 46 H 1.07993 * 119.96112 * 179.97438 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 3.2543 -0.5740 1.6159 6 9 4.0937 0.1960 0.8895 7 6 3.7155 -1.2221 2.7484 8 6 2.8536 -2.0155 3.4905 9 8 3.3049 -2.6565 4.6007 10 16 3.8496 -4.0519 4.3313 11 8 2.9387 -4.6087 3.3936 12 8 4.0100 -4.6210 5.6235 13 6 5.4648 -3.7656 3.5569 14 1 5.4230 -3.0413 2.7436 15 6 6.5925 -3.4938 4.5665 16 6 7.4940 -4.3635 3.6745 17 1 8.1616 -5.0182 4.2347 18 8 8.1675 -3.6297 2.6498 19 6 9.5802 -3.5286 2.8400 20 6 10.1843 -2.7386 1.7078 21 6 10.6225 -3.3878 0.5688 22 6 11.1727 -2.6626 -0.4716 23 6 11.2929 -1.2894 -0.3692 24 6 10.8594 -0.6407 0.7719 25 6 10.3053 -1.3654 1.8105 26 6 6.2108 -5.0599 3.1915 27 6 1.5284 -2.1495 3.1014 28 6 1.0706 -1.4972 1.9731 29 1 -0.3933 0.4417 0.7651 30 1 1.7923 -0.5138 -0.8900 31 1 1.5615 2.4679 -1.2084 32 1 1.5879 2.4585 1.2242 33 1 4.7462 -1.1129 3.0519 34 1 6.4092 -3.9224 5.5518 35 1 6.8980 -2.4484 4.6088 36 1 9.7844 -3.0239 3.7843 37 1 10.0164 -4.5273 2.8600 38 1 10.5323 -4.4612 0.4904 39 1 11.5111 -3.1693 -1.3634 40 1 11.7251 -0.7231 -1.1810 41 1 10.9529 0.4322 0.8518 42 1 9.9665 -0.8587 2.7021 43 1 6.2082 -5.2787 2.1237 44 1 5.9231 -5.9166 3.8008 45 1 0.8550 -2.7641 3.6805 46 1 0.0393 -1.6023 1.6705 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_11680700_15608174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:14:23 Heat of formation + Delta-G solvation = -122.001237 kcal Electronic energy + Delta-G solvation = -35036.504506 eV Core-core repulsion = 30095.194749 eV Total energy + Delta-G solvation = -4941.309758 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 395.101 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -50.38160 -42.33977 -40.77117 -39.93961 -39.83300 -38.51738 -37.61811 -37.39525 -37.01144 -32.68104 -32.38925 -32.03462 -31.78616 -27.54246 -27.28026 -26.97156 -26.49103 -24.31159 -23.81392 -23.47855 -22.26543 -21.98572 -21.03996 -19.77906 -19.31746 -19.02101 -18.68973 -18.09462 -17.70468 -17.46304 -17.30613 -17.16220 -16.85634 -16.62010 -16.54722 -16.15114 -15.98135 -15.80987 -15.54266 -15.29492 -15.25942 -14.75030 -14.49199 -14.30894 -14.26183 -14.15940 -13.98224 -13.81322 -13.64078 -13.60453 -13.58492 -13.46029 -13.35487 -13.27086 -13.14516 -12.77635 -12.58704 -12.13211 -12.08219 -12.04369 -11.85641 -11.73316 -11.26328 -11.05738 -10.56386 -10.26807 -9.84393 -9.82093 -9.76293 -4.82625 -1.24215 -0.34582 -0.22041 0.33239 0.50203 0.79840 1.16808 1.51464 1.83653 2.09613 2.37788 2.43171 2.64115 2.79086 2.93398 3.00072 3.14262 3.20642 3.27289 3.46254 3.47844 3.57020 3.76929 3.82009 3.91984 3.94366 4.01049 4.15605 4.23789 4.30611 4.32262 4.36527 4.43385 4.47549 4.51488 4.60100 4.62994 4.68865 4.69941 4.75227 4.77660 4.84408 4.88774 4.89651 4.94204 5.08843 5.15674 5.43584 5.55494 5.63001 5.65158 6.09421 6.19617 6.39114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.539 6.539 2 C -0.073 4.073 3 Si 0.732 3.268 4 C -0.131 4.131 5 C 0.114 3.886 6 F -0.093 7.093 7 C -0.155 4.155 8 C 0.073 3.927 9 O -0.662 6.662 10 S 2.594 3.406 11 O -0.974 6.974 12 O -0.954 6.954 13 C -0.622 4.622 14 H 0.171 0.829 15 C -0.133 4.133 16 C 0.077 3.923 17 H 0.109 0.891 18 O -0.371 6.371 19 C 0.100 3.900 20 C -0.107 4.107 21 C -0.113 4.113 22 C -0.136 4.136 23 C -0.124 4.124 24 C -0.133 4.133 25 C -0.110 4.110 26 C -0.115 4.115 27 C -0.107 4.107 28 C -0.064 4.064 29 H 0.391 0.609 30 H 0.143 0.857 31 H -0.286 1.286 32 H -0.281 1.281 33 H 0.182 0.818 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.135 0.865 43 H 0.104 0.896 44 H 0.117 0.883 45 H 0.153 0.847 46 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.314 1.560 -0.922 5.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.182 4.182 3 Si 0.635 3.365 4 C -0.134 4.134 5 C 0.095 3.905 6 F -0.071 7.071 7 C -0.176 4.176 8 C 0.032 3.968 9 O -0.621 6.621 10 S 2.694 3.306 11 O -0.972 6.972 12 O -0.952 6.952 13 C -0.733 4.733 14 H 0.188 0.812 15 C -0.171 4.171 16 C 0.018 3.982 17 H 0.127 0.873 18 O -0.290 6.290 19 C 0.024 3.976 20 C -0.107 4.107 21 C -0.131 4.131 22 C -0.153 4.153 23 C -0.142 4.142 24 C -0.151 4.151 25 C -0.128 4.128 26 C -0.154 4.154 27 C -0.127 4.127 28 C -0.082 4.082 29 H 0.241 0.759 30 H 0.160 0.840 31 H -0.213 1.213 32 H -0.207 1.207 33 H 0.199 0.801 34 H 0.136 0.864 35 H 0.126 0.874 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.149 0.851 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.156 0.844 42 H 0.153 0.847 43 H 0.122 0.878 44 H 0.135 0.865 45 H 0.171 0.829 46 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 4.527 1.920 -1.132 5.046 hybrid contribution -0.474 -0.030 0.474 0.670 sum 4.053 1.890 -0.659 4.521 Atomic orbital electron populations 1.86591 1.17162 1.80335 1.50601 1.25004 0.84480 1.10839 0.97899 0.94000 0.92059 0.72416 0.77983 1.20761 0.92876 1.00134 0.99579 1.16893 0.87469 0.94707 0.91453 1.91239 1.69354 1.70934 1.75588 1.21401 1.03003 0.98480 0.94706 1.17887 0.94217 0.99572 0.85158 1.85701 1.81153 1.51381 1.43894 1.05493 0.77664 0.73031 0.74418 1.93618 1.60621 1.77134 1.65873 1.93608 1.87445 1.74533 1.39594 1.32093 1.17348 1.10524 1.13309 0.81167 1.23384 0.92228 1.04692 0.96801 1.22888 0.93129 0.93096 0.89081 0.87313 1.87944 1.19685 1.74565 1.46826 1.21520 0.80398 0.99545 0.96107 1.19788 1.00396 0.94317 0.96187 1.21316 0.97943 1.00728 0.93086 1.21454 0.99770 0.94723 0.99397 1.21531 0.99192 0.95002 0.98510 1.21465 0.98809 1.01041 0.93792 1.21320 0.98406 0.93435 0.99629 1.23041 0.93980 0.92912 1.05443 1.21657 0.94123 0.99288 0.97616 1.20993 1.01890 0.93222 0.92047 0.75885 0.84008 1.21319 1.20733 0.80114 0.86403 0.87390 0.90750 0.90930 0.85066 0.84623 0.84540 0.84371 0.84714 0.87776 0.86485 0.82899 0.80960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.75 11.64 -148.98 -1.73 -0.98 16 2 C -0.07 0.18 2.97 71.24 0.21 0.40 16 3 Si 0.73 -0.86 29.58 68.60 2.03 1.17 16 4 C -0.13 0.25 5.13 -19.81 -0.10 0.15 16 5 C 0.11 -0.25 6.66 22.36 0.15 -0.11 16 6 F -0.09 0.36 13.71 44.97 0.62 0.98 16 7 C -0.16 0.35 8.49 22.41 0.19 0.54 16 8 C 0.07 0.13 4.79 22.50 0.11 0.24 16 9 O -0.66 -2.25 10.05 -61.57 -0.62 -2.87 16 10 S 2.59 9.86 5.14 -56.49 -0.29 9.57 16 11 O -0.97 -8.41 16.26 -118.57 -1.93 -10.34 16 12 O -0.95 -9.21 17.27 -118.57 -2.05 -11.26 16 13 C -0.62 1.89 3.97 31.12 0.12 2.02 16 14 H 0.17 -0.94 6.13 -2.39 -0.01 -0.96 16 15 C -0.13 0.69 7.47 31.12 0.23 0.92 16 16 C 0.08 -0.39 4.36 31.12 0.14 -0.25 16 17 H 0.11 -0.96 7.88 -2.39 -0.02 -0.98 16 18 O -0.37 0.55 10.26 -148.98 -1.53 -0.98 16 19 C 0.10 -0.35 5.91 71.24 0.42 0.07 16 20 C -0.11 0.00 5.51 -19.87 -0.11 -0.11 16 21 C -0.11 -0.04 9.70 22.27 0.22 0.17 16 22 C -0.14 -0.01 10.05 22.27 0.22 0.21 16 23 C -0.12 0.03 10.05 22.27 0.22 0.26 16 24 C -0.13 0.07 10.05 22.27 0.22 0.30 16 25 C -0.11 0.04 9.70 22.27 0.22 0.26 16 26 C -0.12 0.47 7.50 31.12 0.23 0.71 16 27 C -0.11 -0.12 9.05 22.37 0.20 0.08 16 28 C -0.06 0.12 9.23 22.25 0.21 0.32 16 29 H 0.39 -2.99 8.43 -74.06 -0.62 -3.61 16 30 H 0.14 -0.62 7.96 -2.38 -0.02 -0.64 16 31 H -0.29 -1.54 7.11 99.48 0.71 -0.83 16 32 H -0.28 -0.93 7.11 99.48 0.71 -0.22 16 33 H 0.18 -1.38 7.28 -2.91 -0.02 -1.41 16 34 H 0.12 -0.66 7.43 -2.39 -0.02 -0.67 16 35 H 0.11 -0.81 8.14 -2.39 -0.02 -0.83 16 36 H 0.07 -0.46 8.09 -2.39 -0.02 -0.48 16 37 H 0.07 -0.42 8.08 -2.39 -0.02 -0.44 16 38 H 0.13 -0.32 8.06 -2.91 -0.02 -0.34 16 39 H 0.14 -0.44 8.06 -2.91 -0.02 -0.47 16 40 H 0.14 -0.52 8.06 -2.91 -0.02 -0.55 16 41 H 0.14 -0.59 8.06 -2.91 -0.02 -0.61 16 42 H 0.13 -0.52 8.06 -2.91 -0.02 -0.54 16 43 H 0.10 -0.44 8.14 -2.39 -0.02 -0.46 16 44 H 0.12 -0.77 8.10 -2.39 -0.02 -0.79 16 45 H 0.15 -0.04 8.06 -2.91 -0.02 -0.06 16 46 H 0.17 -0.97 7.08 -2.91 -0.02 -0.99 16 Total: 0.00 -22.45 399.78 -1.96 -24.41 By element: Atomic # 1 Polarization: -16.31 SS G_CDS: 0.44 Total: -15.87 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 3.10 Total: 6.17 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -7.86 Total: -26.43 kcal Atomic # 9 Polarization: 0.36 SS G_CDS: 0.62 Total: 0.98 kcal Atomic # 14 Polarization: -0.86 SS G_CDS: 2.03 Total: 1.17 kcal Atomic # 16 Polarization: 9.86 SS G_CDS: -0.29 Total: 9.57 kcal Total: -22.45 -1.96 -24.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_11680700_15608174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.589 kcal (2) G-P(sol) polarization free energy of solvation -22.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds