Wall clock time and date at job start Mon Mar 8 2021 08:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45194 * 109.47448 * 2 1 4 4 C 1.34230 * 117.00257 * 179.97438 * 3 2 1 5 5 O 1.20828 * 120.00076 * 359.97438 * 4 3 2 6 6 C 1.50704 * 120.00307 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.47177 * 300.00272 * 6 4 3 8 8 C 1.53006 * 109.46786 * 59.99905 * 6 4 3 9 9 C 1.52995 * 109.46752 * 180.02562 * 8 6 4 10 10 C 1.52996 * 109.47277 * 299.99856 * 9 8 6 11 11 F 1.39906 * 109.47505 * 180.02562 * 10 9 8 12 12 C 1.52998 * 109.47454 * 300.00311 * 10 9 8 13 13 S 1.81401 * 109.46866 * 305.00102 * 12 10 9 14 14 O 1.42102 * 110.54517 * 68.37248 * 13 12 10 15 15 O 1.42107 * 110.54229 * 291.62081 * 13 12 10 16 16 O 1.52206 * 104.45082 * 179.97438 * 13 12 10 17 17 C 1.35905 * 113.99544 * 74.99699 * 16 13 12 18 18 C 1.38668 * 120.04125 * 90.00229 * 17 16 13 19 19 C 1.38386 * 119.92246 * 179.97438 * 18 17 16 20 20 F 1.35090 * 120.00007 * 179.97438 * 19 18 17 21 21 C 1.38478 * 120.00197 * 0.02726 * 19 18 17 22 22 C 1.50697 * 119.95883 * 179.97438 * 21 19 18 23 23 O 1.42908 * 109.47046 * 74.99607 * 22 21 19 24 24 Si 1.86297 * 109.47439 * 194.99845 * 22 21 19 25 25 C 1.38250 * 120.08453 * 359.97438 * 21 19 18 26 26 C 1.38133 * 120.08069 * 359.74302 * 25 21 19 27 27 C 1.53006 * 109.47112 * 60.00364 * 10 9 8 28 28 C 1.52995 * 109.46752 * 299.99958 * 27 10 9 29 29 H 1.09008 * 109.46372 * 60.00543 * 1 2 3 30 30 H 1.08996 * 109.47043 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47250 * 300.00530 * 1 2 3 32 32 H 1.08998 * 109.47250 * 239.99470 * 2 1 3 33 33 H 1.08999 * 109.46733 * 119.99863 * 2 1 3 34 34 H 1.09000 * 109.46702 * 300.00203 * 8 6 4 35 35 H 1.09002 * 109.46964 * 60.00236 * 8 6 4 36 36 H 1.08998 * 109.47214 * 180.02562 * 9 8 6 37 37 H 1.09002 * 109.47345 * 60.00284 * 9 8 6 38 38 H 1.08999 * 109.47814 * 185.00146 * 12 10 9 39 39 H 1.09001 * 109.47170 * 64.99286 * 12 10 9 40 40 H 1.08003 * 120.03954 * 359.95685 * 18 17 16 41 41 H 1.09001 * 109.46944 * 314.99900 * 22 21 19 42 42 H 0.96701 * 113.99278 * 60.00524 * 23 22 21 43 43 H 1.48503 * 109.99973 * 58.67813 * 24 22 21 44 44 H 1.48496 * 110.00217 * 180.02562 * 24 22 21 45 45 H 1.08002 * 119.96246 * 180.02562 * 25 21 19 46 46 H 1.08005 * 120.00353 * 180.27370 * 26 25 21 47 47 H 1.08993 * 109.46972 * 59.99680 * 27 10 9 48 48 H 1.09003 * 109.47180 * 180.02562 * 27 10 9 49 49 H 1.09008 * 109.47353 * 179.97438 * 28 27 10 50 50 H 1.09002 * 109.47345 * 299.99716 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0015 6 6 3.9209 2.9373 0.0000 7 1 3.5854 3.4690 -0.8905 8 6 3.4487 3.6850 1.2486 9 6 4.0331 5.0990 1.2477 10 6 5.5610 5.0194 1.2482 11 9 6.0954 6.3123 1.2480 12 6 6.0324 4.2735 2.4981 13 16 5.3494 5.0758 3.9747 14 8 3.9414 4.8940 4.0348 15 8 5.9310 6.3593 4.1589 16 8 5.8838 4.2508 5.1368 17 6 7.1966 4.4695 5.4123 18 6 7.5614 5.4568 6.3152 19 6 8.8988 5.6770 6.5942 20 9 9.2559 6.6387 7.4732 21 6 9.8711 4.9124 5.9717 22 6 11.3272 5.1534 6.2758 23 8 11.6397 4.6186 7.5637 24 14 12.3781 4.3173 4.9846 25 6 9.5076 3.9281 5.0714 26 6 8.1734 3.7014 4.7947 27 6 6.0331 4.2717 -0.0004 28 6 5.4488 2.8577 0.0005 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.3602 3.7420 1.2480 35 1 3.7842 3.1533 2.1391 36 1 3.6971 5.6315 2.1374 37 1 3.6972 5.6304 0.3573 38 1 7.1213 4.2938 2.5444 39 1 5.6898 3.2396 2.4552 40 1 6.8026 6.0533 6.7998 41 1 11.5272 6.2249 6.2690 42 1 11.4854 3.6673 7.6424 43 1 12.0402 4.8420 3.6371 44 1 13.8164 4.5470 5.2736 45 1 10.2675 3.3326 4.5873 46 1 7.8907 2.9292 4.0945 47 1 5.6973 4.8031 -0.8908 48 1 7.1217 4.2146 0.0002 49 1 5.7848 2.3251 -0.8893 50 1 5.7847 2.3263 0.8909 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_11680700_16464696.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:25:20 Heat of formation + Delta-G solvation = -279.200771 kcal Electronic energy + Delta-G solvation = -41037.586339 eV Core-core repulsion = 35374.926914 eV Total energy + Delta-G solvation = -5662.659425 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 421.123 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -50.12551 -49.08269 -42.48809 -41.86263 -39.92912 -39.73423 -38.44922 -37.64284 -37.60753 -37.34481 -33.69649 -32.72765 -32.64102 -32.26995 -32.05059 -29.41321 -27.25115 -25.50781 -24.64131 -24.41021 -23.89933 -23.68742 -22.08204 -21.86315 -20.71491 -19.80962 -19.22050 -19.07852 -18.78218 -18.55596 -18.18473 -17.76955 -17.64178 -17.52418 -17.26862 -17.22041 -16.84177 -16.62113 -16.24134 -16.07517 -15.82430 -15.60850 -15.46781 -15.34277 -15.15106 -15.11681 -14.81848 -14.58185 -14.41066 -14.25663 -14.14422 -13.90297 -13.84348 -13.71715 -13.62602 -13.37497 -13.30636 -13.27270 -13.14249 -12.96040 -12.94867 -12.90238 -12.82081 -12.59410 -12.47557 -12.39808 -12.17315 -12.06517 -11.78552 -11.55676 -11.39608 -11.30384 -10.70341 -10.49364 -10.16765 -5.25000 -1.40552 -0.48880 -0.35745 0.71458 1.02695 1.10237 1.46255 1.54330 1.81873 1.84685 2.20759 2.54203 2.69011 2.81222 2.91493 2.99333 3.09242 3.15270 3.18449 3.27631 3.33875 3.40610 3.49639 3.52626 3.63810 3.76540 3.80038 3.83308 3.91380 3.95121 3.97162 4.01063 4.06796 4.20434 4.24564 4.33798 4.36997 4.41883 4.42775 4.51572 4.59435 4.61922 4.64458 4.67825 4.68833 4.70561 4.76800 4.77879 4.91104 4.97997 5.00511 5.29465 5.41081 6.36977 6.66387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.355 6.355 4 C 0.467 3.533 5 O -0.505 6.505 6 C -0.087 4.087 7 H 0.119 0.881 8 C -0.109 4.109 9 C -0.171 4.171 10 C 0.141 3.859 11 F -0.190 7.190 12 C -0.693 4.693 13 S 2.590 3.410 14 O -0.909 6.909 15 O -0.930 6.930 16 O -0.658 6.658 17 C 0.098 3.902 18 C -0.127 4.127 19 C 0.151 3.849 20 F -0.115 7.115 21 C -0.139 4.139 22 C -0.074 4.074 23 O -0.531 6.531 24 Si 0.692 3.308 25 C -0.067 4.067 26 C -0.138 4.138 27 C -0.128 4.128 28 C -0.108 4.108 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.153 0.847 39 H 0.162 0.838 40 H 0.158 0.842 41 H 0.121 0.879 42 H 0.380 0.620 43 H -0.250 1.250 44 H -0.247 1.247 45 H 0.157 0.843 46 H 0.155 0.845 47 H 0.091 0.909 48 H 0.090 0.910 49 H 0.089 0.911 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.623 -5.711 -3.666 6.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.272 6.272 4 C 0.309 3.691 5 O -0.393 6.393 6 C -0.107 4.107 7 H 0.136 0.864 8 C -0.146 4.146 9 C -0.208 4.208 10 C 0.121 3.879 11 F -0.170 7.170 12 C -0.819 4.819 13 S 2.684 3.316 14 O -0.907 6.907 15 O -0.928 6.928 16 O -0.617 6.617 17 C 0.056 3.944 18 C -0.147 4.147 19 C 0.131 3.869 20 F -0.094 7.094 21 C -0.141 4.141 22 C -0.184 4.184 23 O -0.336 6.336 24 Si 0.591 3.409 25 C -0.085 4.085 26 C -0.158 4.158 27 C -0.166 4.166 28 C -0.145 4.145 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.118 0.882 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.123 0.877 38 H 0.171 0.829 39 H 0.180 0.820 40 H 0.176 0.824 41 H 0.138 0.862 42 H 0.228 0.772 43 H -0.174 1.174 44 H -0.172 1.172 45 H 0.174 0.826 46 H 0.172 0.828 47 H 0.110 0.890 48 H 0.109 0.891 49 H 0.107 0.893 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.088 -4.921 -3.629 6.211 hybrid contribution -0.219 0.208 -0.076 0.311 sum 0.869 -4.713 -3.705 6.058 Atomic orbital electron populations 1.21829 0.92244 1.03314 1.03761 1.23103 0.95696 0.79694 1.02766 1.86507 1.24170 1.32883 1.83593 1.23582 0.80866 0.92332 0.72295 1.90689 1.60480 1.43038 1.45074 1.21245 0.96550 0.90374 1.02483 0.86357 1.21528 1.03257 0.93708 0.96106 1.22629 0.91892 0.99494 1.06814 1.20429 0.94116 0.78885 0.94435 1.93006 1.87716 1.38845 1.97412 1.31690 1.15716 1.15821 1.18627 1.05799 0.75664 0.74745 0.75395 1.93684 1.27142 1.85345 1.84504 1.93712 1.78176 1.38717 1.82218 1.85771 1.31309 1.78470 1.66125 1.17664 0.77642 0.98312 1.00748 1.21306 0.96370 0.98335 0.98731 1.17074 0.91330 0.88280 0.90242 1.91598 1.92218 1.60100 1.65439 1.20760 0.97258 0.97512 0.98545 1.25171 0.93593 1.04587 0.95021 1.86602 1.88445 1.28270 1.30275 0.95050 0.79601 0.89821 0.76399 1.20749 0.95455 0.96166 0.96087 1.21379 0.92110 1.00256 1.02045 1.22062 1.02595 0.95686 0.96285 1.21528 0.91809 0.96217 1.04948 0.91336 0.89978 0.91245 0.91071 0.91030 0.88212 0.90742 0.88782 0.87729 0.82920 0.82025 0.82404 0.86166 0.77217 1.17414 1.17182 0.82620 0.82759 0.89044 0.89134 0.89281 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.32 10.29 37.16 0.38 0.70 16 2 C 0.06 -0.03 6.19 37.16 0.23 0.20 16 3 O -0.35 -0.24 10.12 -39.26 -0.40 -0.63 16 4 C 0.47 0.30 7.26 36.01 0.26 0.56 16 5 O -0.51 -1.58 15.73 -18.75 -0.30 -1.87 16 6 C -0.09 0.19 2.63 -91.77 -0.24 -0.05 16 7 H 0.12 -0.46 8.14 -51.93 -0.42 -0.88 16 8 C -0.11 0.19 4.56 -26.73 -0.12 0.07 16 9 C -0.17 0.23 4.62 -26.74 -0.12 0.11 16 10 C 0.14 -0.19 1.11 -90.62 -0.10 -0.30 16 11 F -0.19 -0.25 16.36 2.25 0.04 -0.21 16 12 C -0.69 1.68 4.08 37.16 0.15 1.83 16 13 S 2.59 3.39 4.41 -107.50 -0.47 2.91 16 14 O -0.91 -3.00 14.90 -67.04 -1.00 -4.00 16 15 O -0.93 -3.77 15.96 -67.03 -1.07 -4.84 16 16 O -0.66 -0.50 10.05 -51.76 -0.52 -1.02 16 17 C 0.10 0.02 4.79 -39.23 -0.19 -0.17 16 18 C -0.13 -0.17 9.03 -39.37 -0.36 -0.52 16 19 C 0.15 0.18 7.24 -39.44 -0.29 -0.10 16 20 F -0.12 -0.34 16.75 2.25 0.04 -0.30 16 21 C -0.14 0.15 5.27 -104.53 -0.55 -0.40 16 22 C -0.07 0.09 2.45 36.00 0.09 0.18 16 23 O -0.53 0.36 12.88 -35.23 -0.45 -0.10 16 24 Si 0.69 -2.11 29.91 -169.99 -5.08 -7.20 16 25 C -0.07 0.24 8.65 -39.62 -0.34 -0.10 16 26 C -0.14 0.41 8.46 -39.42 -0.33 0.08 16 27 C -0.13 0.42 5.19 -26.73 -0.14 0.28 16 28 C -0.11 0.32 4.22 -26.74 -0.11 0.20 16 29 H 0.07 -0.14 8.14 -51.92 -0.42 -0.56 16 30 H 0.08 -0.27 8.14 -51.93 -0.42 -0.69 16 31 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 32 H 0.07 -0.04 8.13 -51.93 -0.42 -0.46 16 33 H 0.07 -0.03 8.13 -51.93 -0.42 -0.45 16 34 H 0.10 -0.19 8.11 -51.93 -0.42 -0.61 16 35 H 0.07 -0.13 6.06 -51.93 -0.31 -0.44 16 36 H 0.09 0.00 5.40 -51.93 -0.28 -0.28 16 37 H 0.10 -0.31 8.14 -51.93 -0.42 -0.74 16 38 H 0.15 -0.74 6.63 -51.92 -0.34 -1.09 16 39 H 0.16 -0.78 4.83 -51.92 -0.25 -1.03 16 40 H 0.16 0.13 8.06 -52.48 -0.42 -0.29 16 41 H 0.12 -0.03 7.90 -51.93 -0.41 -0.44 16 42 H 0.38 -1.97 8.70 45.56 0.40 -1.58 16 43 H -0.25 0.25 7.11 56.52 0.40 0.65 16 44 H -0.25 -0.13 7.11 56.52 0.40 0.27 16 45 H 0.16 -1.10 5.12 -52.49 -0.27 -1.37 16 46 H 0.15 -1.01 7.52 -52.48 -0.39 -1.41 16 47 H 0.09 -0.36 8.14 -51.93 -0.42 -0.78 16 48 H 0.09 -0.37 8.14 -51.93 -0.42 -0.79 16 49 H 0.09 -0.24 8.10 -51.92 -0.42 -0.66 16 50 H 0.08 -0.26 6.28 -51.93 -0.33 -0.58 16 LS Contribution 413.29 15.07 6.23 6.23 Total: 0.00 -11.99 413.29 -11.23 -23.23 By element: Atomic # 1 Polarization: -8.32 SS G_CDS: -6.46 Total: -14.78 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -1.78 Total: 2.58 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -3.74 Total: -12.46 kcal Atomic # 9 Polarization: -0.59 SS G_CDS: 0.07 Total: -0.51 kcal Atomic # 14 Polarization: -2.11 SS G_CDS: -5.08 Total: -7.20 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -0.47 Total: 2.91 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -11.99 -11.23 -23.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_11680700_16464696.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -255.975 kcal (2) G-P(sol) polarization free energy of solvation -11.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -267.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -279.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds