Wall clock time and date at job start Mon Mar 8 2021 08:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45194 * 109.47448 * 2 1 4 4 C 1.34230 * 117.00257 * 179.97438 * 3 2 1 5 5 O 1.20828 * 120.00076 * 359.97438 * 4 3 2 6 6 C 1.50704 * 120.00307 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.47177 * 300.00272 * 6 4 3 8 8 C 1.53006 * 109.46786 * 59.99905 * 6 4 3 9 9 C 1.52995 * 109.46752 * 180.02562 * 8 6 4 10 10 C 1.52996 * 109.47277 * 299.99856 * 9 8 6 11 11 F 1.39906 * 109.47505 * 180.02562 * 10 9 8 12 12 C 1.52998 * 109.47454 * 300.00311 * 10 9 8 13 13 S 1.81401 * 109.46866 * 305.00102 * 12 10 9 14 14 O 1.42102 * 110.54517 * 68.37248 * 13 12 10 15 15 O 1.42107 * 110.54229 * 291.62081 * 13 12 10 16 16 O 1.52206 * 104.45082 * 179.97438 * 13 12 10 17 17 C 1.35905 * 113.99544 * 74.99699 * 16 13 12 18 18 C 1.38668 * 120.04125 * 90.00229 * 17 16 13 19 19 C 1.38386 * 119.92246 * 179.97438 * 18 17 16 20 20 F 1.35090 * 120.00007 * 179.97438 * 19 18 17 21 21 C 1.38478 * 120.00197 * 0.02726 * 19 18 17 22 22 C 1.50697 * 119.95883 * 179.97438 * 21 19 18 23 23 O 1.42908 * 109.47046 * 74.99607 * 22 21 19 24 24 Si 1.86297 * 109.47439 * 194.99845 * 22 21 19 25 25 C 1.38250 * 120.08453 * 359.97438 * 21 19 18 26 26 C 1.38133 * 120.08069 * 359.74302 * 25 21 19 27 27 C 1.53006 * 109.47112 * 60.00364 * 10 9 8 28 28 C 1.52995 * 109.46752 * 299.99958 * 27 10 9 29 29 H 1.09008 * 109.46372 * 60.00543 * 1 2 3 30 30 H 1.08996 * 109.47043 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47250 * 300.00530 * 1 2 3 32 32 H 1.08998 * 109.47250 * 239.99470 * 2 1 3 33 33 H 1.08999 * 109.46733 * 119.99863 * 2 1 3 34 34 H 1.09000 * 109.46702 * 300.00203 * 8 6 4 35 35 H 1.09002 * 109.46964 * 60.00236 * 8 6 4 36 36 H 1.08998 * 109.47214 * 180.02562 * 9 8 6 37 37 H 1.09002 * 109.47345 * 60.00284 * 9 8 6 38 38 H 1.08999 * 109.47814 * 185.00146 * 12 10 9 39 39 H 1.09001 * 109.47170 * 64.99286 * 12 10 9 40 40 H 1.08003 * 120.03954 * 359.95685 * 18 17 16 41 41 H 1.09001 * 109.46944 * 314.99900 * 22 21 19 42 42 H 0.96701 * 113.99278 * 60.00524 * 23 22 21 43 43 H 1.48503 * 109.99973 * 58.67813 * 24 22 21 44 44 H 1.48496 * 110.00217 * 180.02562 * 24 22 21 45 45 H 1.08002 * 119.96246 * 180.02562 * 25 21 19 46 46 H 1.08005 * 120.00353 * 180.27370 * 26 25 21 47 47 H 1.08993 * 109.46972 * 59.99680 * 27 10 9 48 48 H 1.09003 * 109.47180 * 180.02562 * 27 10 9 49 49 H 1.09008 * 109.47353 * 179.97438 * 28 27 10 50 50 H 1.09002 * 109.47345 * 299.99716 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0015 6 6 3.9209 2.9373 0.0000 7 1 3.5854 3.4690 -0.8905 8 6 3.4487 3.6850 1.2486 9 6 4.0331 5.0990 1.2477 10 6 5.5610 5.0194 1.2482 11 9 6.0954 6.3123 1.2480 12 6 6.0324 4.2735 2.4981 13 16 5.3494 5.0758 3.9747 14 8 3.9414 4.8940 4.0348 15 8 5.9310 6.3593 4.1589 16 8 5.8838 4.2508 5.1368 17 6 7.1966 4.4695 5.4123 18 6 7.5614 5.4568 6.3152 19 6 8.8988 5.6770 6.5942 20 9 9.2559 6.6387 7.4732 21 6 9.8711 4.9124 5.9717 22 6 11.3272 5.1534 6.2758 23 8 11.6397 4.6186 7.5637 24 14 12.3781 4.3173 4.9846 25 6 9.5076 3.9281 5.0714 26 6 8.1734 3.7014 4.7947 27 6 6.0331 4.2717 -0.0004 28 6 5.4488 2.8577 0.0005 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.3602 3.7420 1.2480 35 1 3.7842 3.1533 2.1391 36 1 3.6971 5.6315 2.1374 37 1 3.6972 5.6304 0.3573 38 1 7.1213 4.2938 2.5444 39 1 5.6898 3.2396 2.4552 40 1 6.8026 6.0533 6.7998 41 1 11.5272 6.2249 6.2690 42 1 11.4854 3.6673 7.6424 43 1 12.0402 4.8420 3.6371 44 1 13.8164 4.5470 5.2736 45 1 10.2675 3.3326 4.5873 46 1 7.8907 2.9292 4.0945 47 1 5.6973 4.8031 -0.8908 48 1 7.1217 4.2146 0.0002 49 1 5.7848 2.3251 -0.8893 50 1 5.7847 2.3263 0.8909 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_11680700_16464696.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:25:19 Heat of formation + Delta-G solvation = -280.668280 kcal Electronic energy + Delta-G solvation = -41037.649975 eV Core-core repulsion = 35374.926914 eV Total energy + Delta-G solvation = -5662.723061 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 421.123 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -50.23178 -49.03921 -42.44594 -41.83202 -39.83272 -39.61097 -38.56140 -37.66679 -37.55540 -37.43083 -33.56819 -32.64246 -32.49411 -32.07509 -31.92863 -29.25763 -27.16325 -25.39030 -24.54680 -24.20916 -23.81346 -23.56825 -22.04876 -21.80470 -20.57082 -19.80895 -19.22334 -19.03031 -18.75354 -18.49519 -18.05776 -17.75453 -17.61991 -17.48758 -17.22375 -17.18785 -16.79756 -16.57599 -16.16835 -16.07983 -15.77107 -15.50518 -15.34840 -15.30457 -15.06305 -14.96680 -14.69644 -14.46099 -14.39937 -14.13192 -14.04164 -13.79589 -13.68174 -13.61564 -13.56096 -13.46790 -13.35598 -13.19651 -13.10513 -12.88588 -12.80642 -12.77195 -12.67745 -12.48392 -12.30095 -12.25139 -12.07266 -11.94987 -11.59735 -11.49179 -11.37474 -11.13595 -10.57102 -10.40174 -10.10212 -5.01965 -1.40418 -0.42351 -0.24905 0.72455 1.10433 1.21673 1.63969 1.68657 1.95712 2.02581 2.24227 2.58042 2.81747 2.89094 3.09165 3.13175 3.22522 3.32833 3.36815 3.44372 3.52917 3.57203 3.67389 3.70792 3.82869 3.89916 3.96566 4.00111 4.05308 4.05634 4.20060 4.22764 4.27956 4.31631 4.34214 4.54356 4.54559 4.56805 4.63537 4.67265 4.73621 4.78252 4.81905 4.83820 4.90442 4.91424 4.94265 5.04269 5.13772 5.15563 5.26438 5.39520 5.46968 6.66811 6.72938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.362 6.362 4 C 0.465 3.535 5 O -0.532 6.532 6 C -0.083 4.083 7 H 0.137 0.863 8 C -0.108 4.108 9 C -0.177 4.177 10 C 0.132 3.868 11 F -0.207 7.207 12 C -0.677 4.677 13 S 2.580 3.420 14 O -0.942 6.942 15 O -0.970 6.970 16 O -0.661 6.661 17 C 0.076 3.924 18 C -0.152 4.152 19 C 0.120 3.880 20 F -0.137 7.137 21 C -0.137 4.137 22 C -0.095 4.095 23 O -0.553 6.553 24 Si 0.810 3.190 25 C -0.054 4.054 26 C -0.121 4.121 27 C -0.120 4.120 28 C -0.106 4.106 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.119 0.881 38 H 0.186 0.814 39 H 0.191 0.809 40 H 0.142 0.858 41 H 0.099 0.901 42 H 0.399 0.601 43 H -0.266 1.266 44 H -0.301 1.301 45 H 0.202 0.798 46 H 0.202 0.798 47 H 0.100 0.900 48 H 0.108 0.892 49 H 0.092 0.908 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.824 -8.213 -6.123 10.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.279 6.279 4 C 0.310 3.690 5 O -0.422 6.422 6 C -0.102 4.102 7 H 0.155 0.845 8 C -0.146 4.146 9 C -0.214 4.214 10 C 0.113 3.887 11 F -0.187 7.187 12 C -0.806 4.806 13 S 2.680 3.320 14 O -0.940 6.940 15 O -0.969 6.969 16 O -0.620 6.620 17 C 0.035 3.965 18 C -0.173 4.173 19 C 0.100 3.900 20 F -0.116 7.116 21 C -0.139 4.139 22 C -0.202 4.202 23 O -0.362 6.362 24 Si 0.712 3.288 25 C -0.071 4.071 26 C -0.141 4.141 27 C -0.158 4.158 28 C -0.144 4.144 29 H 0.087 0.913 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.114 0.886 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.137 0.863 38 H 0.203 0.797 39 H 0.209 0.791 40 H 0.160 0.840 41 H 0.117 0.883 42 H 0.250 0.750 43 H -0.192 1.192 44 H -0.229 1.229 45 H 0.218 0.782 46 H 0.219 0.781 47 H 0.119 0.881 48 H 0.126 0.874 49 H 0.110 0.890 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.216 -7.400 -6.019 9.793 hybrid contribution -0.581 0.990 0.714 1.352 sum 1.635 -6.410 -5.305 8.479 Atomic orbital electron populations 1.21834 0.91099 1.04179 1.03644 1.23235 0.96680 0.79374 1.02611 1.86522 1.24505 1.33448 1.83415 1.24135 0.80567 0.93087 0.71254 1.90671 1.60905 1.44124 1.46489 1.21339 0.97276 0.88663 1.02889 0.84498 1.21511 1.03172 0.93494 0.96400 1.22679 0.92434 0.99676 1.06641 1.20694 0.93889 0.78403 0.95751 1.92978 1.87895 1.40325 1.97547 1.31601 1.17580 1.16457 1.14920 1.05823 0.75156 0.74526 0.76525 1.93639 1.29255 1.85701 1.85442 1.93664 1.78482 1.41312 1.83427 1.85742 1.31986 1.77830 1.66419 1.18022 0.77989 0.99051 1.01471 1.21363 0.96342 0.99468 1.00110 1.17401 0.92026 0.89189 0.91346 1.91530 1.92386 1.61212 1.66444 1.20972 0.96718 0.97616 0.98591 1.25602 0.94295 1.04262 0.96054 1.86559 1.88527 1.30185 1.30920 0.93869 0.74589 0.87380 0.72948 1.21253 0.96322 0.94966 0.94533 1.21952 0.91286 0.99638 1.01218 1.22061 1.03587 0.94962 0.95209 1.21559 0.90837 0.96482 1.05494 0.91287 0.88649 0.91466 0.91156 0.91277 0.88552 0.90863 0.90727 0.86306 0.79650 0.79136 0.83984 0.88349 0.75017 1.19201 1.22929 0.78152 0.78064 0.88146 0.87389 0.88950 0.89534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.66 10.29 71.98 0.74 1.41 16 2 C 0.05 -0.05 6.19 71.98 0.45 0.40 16 3 O -0.36 -0.40 10.12 -51.42 -0.52 -0.92 16 4 C 0.47 0.20 7.26 71.24 0.52 0.71 16 5 O -0.53 -2.85 15.73 21.96 0.35 -2.50 16 6 C -0.08 0.49 2.63 -11.54 -0.03 0.46 16 7 H 0.14 -1.33 8.14 -2.39 -0.02 -1.35 16 8 C -0.11 0.44 4.56 30.59 0.14 0.58 16 9 C -0.18 0.53 4.62 30.59 0.14 0.67 16 10 C 0.13 -0.57 1.11 -10.79 -0.01 -0.58 16 11 F -0.21 -0.43 16.36 44.97 0.74 0.31 16 12 C -0.68 4.64 4.08 71.98 0.29 4.93 16 13 S 2.58 9.25 4.41 -56.49 -0.25 9.00 16 14 O -0.94 -8.09 14.90 -118.57 -1.77 -9.86 16 15 O -0.97 -10.16 15.96 -118.57 -1.89 -12.05 16 16 O -0.66 -1.51 10.05 -61.57 -0.62 -2.13 16 17 C 0.08 0.05 4.79 22.50 0.11 0.16 16 18 C -0.15 -0.79 9.03 22.41 0.20 -0.59 16 19 C 0.12 0.56 7.24 22.36 0.16 0.72 16 20 F -0.14 -1.31 16.75 44.97 0.75 -0.56 16 21 C -0.14 0.32 5.27 -19.81 -0.10 0.21 16 22 C -0.10 0.23 2.45 71.23 0.17 0.40 16 23 O -0.55 0.49 12.88 -148.98 -1.92 -1.43 16 24 Si 0.81 -6.45 29.91 68.60 2.05 -4.40 16 25 C -0.05 0.54 8.65 22.25 0.19 0.73 16 26 C -0.12 1.06 8.46 22.37 0.19 1.25 16 27 C -0.12 1.15 5.19 30.59 0.16 1.31 16 28 C -0.11 0.92 4.22 30.59 0.13 1.05 16 29 H 0.07 -0.30 8.14 -2.38 -0.02 -0.32 16 30 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 31 H 0.07 -0.26 8.14 -2.39 -0.02 -0.27 16 32 H 0.07 -0.07 8.13 -2.39 -0.02 -0.09 16 33 H 0.07 -0.05 8.13 -2.39 -0.02 -0.07 16 34 H 0.10 -0.34 8.11 -2.39 -0.02 -0.36 16 35 H 0.07 -0.30 6.06 -2.39 -0.01 -0.31 16 36 H 0.07 0.11 5.40 -2.39 -0.01 0.09 16 37 H 0.12 -0.77 8.14 -2.39 -0.02 -0.79 16 38 H 0.19 -2.52 6.63 -2.39 -0.02 -2.54 16 39 H 0.19 -2.42 4.83 -2.39 -0.01 -2.43 16 40 H 0.14 0.93 8.06 -2.91 -0.02 0.91 16 41 H 0.10 0.14 7.90 -2.39 -0.02 0.12 16 42 H 0.40 -4.38 8.70 -74.06 -0.64 -5.02 16 43 H -0.27 1.33 7.11 99.48 0.71 2.04 16 44 H -0.30 -0.31 7.11 99.48 0.71 0.39 16 45 H 0.20 -3.88 5.12 -2.91 -0.01 -3.89 16 46 H 0.20 -3.76 7.52 -2.91 -0.02 -3.78 16 47 H 0.10 -1.09 8.14 -2.39 -0.02 -1.11 16 48 H 0.11 -1.34 8.14 -2.39 -0.02 -1.36 16 49 H 0.09 -0.78 8.10 -2.38 -0.02 -0.79 16 50 H 0.09 -0.86 6.28 -2.39 -0.01 -0.87 16 Total: 0.00 -34.01 413.29 0.77 -33.23 By element: Atomic # 1 Polarization: -22.91 SS G_CDS: 0.41 Total: -22.51 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: 3.45 Total: 13.82 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -6.37 Total: -28.89 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 1.49 Total: -0.25 kcal Atomic # 14 Polarization: -6.45 SS G_CDS: 2.05 Total: -4.40 kcal Atomic # 16 Polarization: 9.25 SS G_CDS: -0.25 Total: 9.00 kcal Total: -34.01 0.77 -33.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_11680700_16464696.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -247.436 kcal (2) G-P(sol) polarization free energy of solvation -34.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -281.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -280.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds