Wall clock time and date at job start Mon Mar 8 2021 08:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45202 * 109.47245 * 2 1 4 4 C 1.34231 * 116.99801 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99931 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00016 * 179.97438 * 4 3 2 7 7 H 1.09008 * 109.46618 * 60.00810 * 6 4 3 8 8 C 1.52998 * 109.47290 * 180.02562 * 6 4 3 9 9 C 1.52995 * 109.47149 * 180.02562 * 8 6 4 10 10 C 1.53009 * 109.47180 * 300.00350 * 9 8 6 11 11 F 1.39900 * 109.46830 * 299.99963 * 10 9 8 12 12 C 1.52998 * 109.46930 * 180.02562 * 10 9 8 13 13 S 1.81401 * 109.46948 * 184.99846 * 12 10 9 14 14 O 1.42102 * 110.54114 * 68.37199 * 13 12 10 15 15 O 1.42099 * 110.54366 * 291.62317 * 13 12 10 16 16 O 1.52198 * 104.45192 * 179.97438 * 13 12 10 17 17 C 1.35895 * 114.00126 * 75.00085 * 16 13 12 18 18 C 1.38676 * 120.04115 * 269.98142 * 17 16 13 19 19 C 1.38388 * 119.91886 * 180.02562 * 18 17 16 20 20 F 1.35095 * 119.99403 * 180.02562 * 19 18 17 21 21 C 1.38473 * 120.00405 * 359.74547 * 19 18 17 22 22 C 1.50696 * 119.95652 * 180.27579 * 21 19 18 23 23 O 1.42908 * 109.47042 * 195.23296 * 22 21 19 24 24 Si 1.86303 * 109.47208 * 315.23100 * 22 21 19 25 25 C 1.38251 * 120.08702 * 0.51149 * 21 19 18 26 26 C 1.38142 * 120.07778 * 359.48449 * 25 21 19 27 27 C 1.53001 * 109.47019 * 59.99900 * 10 9 8 28 28 C 1.52995 * 109.47227 * 300.00072 * 27 10 9 29 29 H 1.09003 * 109.46891 * 299.99798 * 1 2 3 30 30 H 1.09003 * 109.46973 * 59.99245 * 1 2 3 31 31 H 1.08997 * 109.47342 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46891 * 240.00202 * 2 1 3 33 33 H 1.09000 * 109.47050 * 120.00224 * 2 1 3 34 34 H 1.09000 * 109.46789 * 60.00359 * 8 6 4 35 35 H 1.08995 * 109.47419 * 300.00574 * 8 6 4 36 36 H 1.09002 * 109.47232 * 180.02562 * 9 8 6 37 37 H 1.09000 * 109.47317 * 60.00272 * 9 8 6 38 38 H 1.08998 * 109.47532 * 64.99984 * 12 10 9 39 39 H 1.09005 * 109.47364 * 304.99424 * 12 10 9 40 40 H 1.07994 * 120.03775 * 359.97438 * 18 17 16 41 41 H 1.08993 * 109.47357 * 75.23335 * 22 21 19 42 42 H 0.96694 * 113.99755 * 60.00248 * 23 22 21 43 43 H 1.48493 * 109.99907 * 58.68120 * 24 22 21 44 44 H 1.48502 * 110.00100 * 180.02562 * 24 22 21 45 45 H 1.08002 * 119.96411 * 179.77076 * 25 21 19 46 46 H 1.07998 * 119.99727 * 180.23517 * 26 25 21 47 47 H 1.09000 * 109.47058 * 60.00336 * 27 10 9 48 48 H 1.09003 * 109.46793 * 180.02562 * 27 10 9 49 49 H 1.09000 * 109.47317 * 300.00105 * 28 27 10 50 50 H 1.09002 * 109.47232 * 180.02562 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9209 2.9373 0.0000 7 1 3.5846 3.4699 0.8897 8 6 5.4488 2.8571 0.0001 9 6 6.0336 4.2709 0.0002 10 6 5.5621 5.0180 -1.2491 11 9 5.9933 4.3350 -2.3913 12 6 6.1475 6.4316 -1.2493 13 16 5.4723 7.3654 -2.6502 14 8 4.0870 7.6185 -2.4595 15 8 5.9592 6.8431 -3.8787 16 8 6.1224 8.7372 -2.5410 17 6 7.4252 8.7638 -2.9269 18 6 8.4289 8.5279 -1.9995 19 6 9.7547 8.5561 -2.3952 20 9 10.7337 8.3261 -1.4931 21 6 10.0776 8.8144 -3.7167 22 6 11.5214 8.8388 -4.1476 23 8 11.6254 9.4606 -5.4301 24 14 12.5236 9.8022 -2.9073 25 6 9.0774 9.0548 -4.6403 26 6 7.7527 9.0275 -4.2493 27 6 4.0342 5.0981 -1.2491 28 6 3.4494 3.6843 -1.2492 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 5.7847 2.3247 -0.8897 35 1 5.7847 2.3253 0.8902 36 1 7.1221 4.2138 -0.0002 37 1 5.6977 4.8031 0.8902 38 1 7.2323 6.3756 -1.3390 39 1 5.8853 6.9336 -0.3179 40 1 8.1762 8.3233 -0.9697 41 1 11.9002 7.8185 -4.2068 42 1 11.3057 10.3729 -5.4519 43 1 12.3982 9.1841 -1.5630 44 1 13.9494 9.8341 -3.3212 45 1 9.3316 9.2597 -5.6698 46 1 6.9723 9.2117 -4.9726 47 1 3.6983 5.6302 -0.3591 48 1 3.6983 5.6299 -2.1393 49 1 3.7853 3.1522 -2.1392 50 1 2.3609 3.7414 -1.2497 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_11680700_16464698.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:25:25 Heat of formation + Delta-G solvation = -273.398751 kcal Electronic energy + Delta-G solvation = -40393.582100 eV Core-core repulsion = 34731.174270 eV Total energy + Delta-G solvation = -5662.407831 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 421.123 amu Computer time = 3.02 seconds Orbital eigenvalues (eV) -50.58442 -49.09329 -42.45408 -41.67787 -39.94125 -39.18549 -38.44122 -37.64881 -37.54041 -37.32414 -34.34181 -32.71238 -32.46413 -32.23269 -32.13944 -29.21180 -27.38105 -25.20254 -24.47167 -24.35866 -23.88751 -23.50333 -22.04244 -21.78023 -20.95454 -19.91625 -19.19273 -19.09114 -18.76297 -18.67508 -18.01551 -17.76478 -17.63783 -17.60415 -17.29956 -17.15806 -16.91350 -16.78396 -16.36047 -16.16488 -16.00585 -15.63718 -15.46728 -15.28811 -15.04664 -14.94729 -14.60416 -14.43099 -14.32547 -14.18923 -14.02431 -13.84218 -13.76931 -13.68712 -13.54740 -13.43508 -13.33740 -13.29038 -13.26186 -13.12105 -12.88639 -12.84610 -12.68818 -12.61407 -12.52395 -12.33669 -12.02354 -11.82872 -11.50710 -11.48459 -11.33206 -11.21779 -11.04285 -10.41466 -9.90099 -5.13733 -1.38350 -0.45416 -0.35929 0.72848 1.09629 1.19045 1.54865 1.61194 1.81780 2.02650 2.20682 2.57252 2.69063 2.73157 2.93379 3.01509 3.06597 3.14917 3.18974 3.28499 3.41221 3.44497 3.50384 3.66259 3.69350 3.81797 3.86964 3.89166 3.95406 3.96391 4.00550 4.07815 4.12275 4.13163 4.28935 4.36755 4.39380 4.45803 4.47319 4.56587 4.60826 4.67678 4.69712 4.75127 4.80005 4.81082 4.83154 4.86009 4.97640 5.02007 5.12173 5.30892 5.47507 6.27714 6.74930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.356 6.356 4 C 0.467 3.533 5 O -0.504 6.504 6 C -0.083 4.083 7 H 0.115 0.885 8 C -0.110 4.110 9 C -0.128 4.128 10 C 0.138 3.862 11 F -0.188 7.188 12 C -0.688 4.688 13 S 2.593 3.407 14 O -0.911 6.911 15 O -0.929 6.929 16 O -0.657 6.657 17 C 0.088 3.912 18 C -0.163 4.163 19 C 0.112 3.888 20 F -0.114 7.114 21 C -0.128 4.128 22 C -0.069 4.069 23 O -0.534 6.534 24 Si 0.684 3.316 25 C -0.060 4.060 26 C -0.088 4.088 27 C -0.171 4.171 28 C -0.111 4.111 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.149 0.851 39 H 0.161 0.839 40 H 0.156 0.844 41 H 0.129 0.871 42 H 0.382 0.618 43 H -0.228 1.228 44 H -0.256 1.256 45 H 0.162 0.838 46 H 0.153 0.847 47 H 0.105 0.895 48 H 0.094 0.906 49 H 0.081 0.919 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.224 4.347 2.795 5.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.273 6.273 4 C 0.309 3.691 5 O -0.391 6.391 6 C -0.102 4.102 7 H 0.133 0.867 8 C -0.147 4.147 9 C -0.167 4.167 10 C 0.119 3.881 11 F -0.168 7.168 12 C -0.813 4.813 13 S 2.686 3.314 14 O -0.910 6.910 15 O -0.927 6.927 16 O -0.616 6.616 17 C 0.047 3.953 18 C -0.184 4.184 19 C 0.092 3.908 20 F -0.093 7.093 21 C -0.130 4.130 22 C -0.179 4.179 23 O -0.339 6.339 24 Si 0.583 3.417 25 C -0.078 4.078 26 C -0.109 4.109 27 C -0.208 4.208 28 C -0.149 4.149 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.167 0.833 39 H 0.179 0.821 40 H 0.174 0.826 41 H 0.146 0.854 42 H 0.230 0.770 43 H -0.152 1.152 44 H -0.181 1.181 45 H 0.179 0.821 46 H 0.171 0.829 47 H 0.123 0.877 48 H 0.112 0.888 49 H 0.099 0.901 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.416 3.716 2.733 4.632 hybrid contribution 0.060 -1.106 0.626 1.273 sum 0.476 2.610 3.359 4.280 Atomic orbital electron populations 1.21824 0.92273 1.03279 1.03690 1.23093 0.95633 0.79791 1.02765 1.86501 1.24274 1.32809 1.83757 1.23588 0.80767 0.92401 0.72326 1.90695 1.60470 1.43044 1.44856 1.21170 0.96628 0.90259 1.02099 0.86720 1.21480 0.91699 0.96343 1.05183 1.22103 1.02551 0.95958 0.96064 1.20467 0.94810 0.87406 0.85462 1.92983 1.91122 1.81052 1.51677 1.31596 1.15004 1.10234 1.24477 1.05738 0.75447 0.73694 0.76481 1.93683 1.28687 1.81907 1.86678 1.93706 1.80465 1.78782 1.39747 1.85766 1.31005 1.57908 1.86919 1.17673 0.77650 1.06524 0.93474 1.21194 0.90967 1.05002 1.01227 1.16972 0.84765 1.02526 0.86495 1.91618 1.59220 1.91812 1.66611 1.20694 0.98702 1.01472 0.92106 1.25090 0.95105 1.03778 0.93901 1.86537 1.86780 1.31750 1.28870 0.95230 0.80120 0.88096 0.78237 1.20870 0.89857 0.96445 1.00596 1.21477 0.98282 0.97099 0.94004 1.22694 0.91910 0.99629 1.06595 1.21495 1.02478 0.93924 0.96956 0.91361 0.91306 0.90003 0.91066 0.91112 0.89744 0.89630 0.89288 0.89018 0.83291 0.82127 0.82618 0.85398 0.77008 1.15160 1.18090 0.82091 0.82907 0.87682 0.88798 0.90057 0.88738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.23 10.29 37.16 0.38 0.61 16 2 C 0.06 0.03 6.19 37.16 0.23 0.26 16 3 O -0.36 -0.59 10.12 -39.26 -0.40 -0.99 16 4 C 0.47 0.99 7.26 36.00 0.26 1.25 16 5 O -0.50 -2.54 15.73 -18.75 -0.29 -2.84 16 6 C -0.08 0.06 2.63 -91.77 -0.24 -0.18 16 7 H 0.11 -0.35 8.14 -51.92 -0.42 -0.77 16 8 C -0.11 0.07 4.37 -26.73 -0.12 -0.05 16 9 C -0.13 0.32 5.00 -26.73 -0.13 0.18 16 10 C 0.14 -0.12 0.89 -90.62 -0.08 -0.20 16 11 F -0.19 -0.40 15.33 2.25 0.03 -0.36 16 12 C -0.69 1.75 4.78 37.16 0.18 1.93 16 13 S 2.59 2.48 4.41 -107.50 -0.47 2.00 16 14 O -0.91 -2.88 15.64 -67.04 -1.05 -3.93 16 15 O -0.93 -3.29 15.96 -67.03 -1.07 -4.36 16 16 O -0.66 -0.18 10.05 -51.73 -0.52 -0.70 16 17 C 0.09 -0.02 4.80 -39.23 -0.19 -0.21 16 18 C -0.16 0.27 8.44 -39.36 -0.33 -0.06 16 19 C 0.11 -0.12 6.66 -39.44 -0.26 -0.38 16 20 F -0.11 0.01 12.81 2.25 0.03 0.04 16 21 C -0.13 0.21 5.14 -104.53 -0.54 -0.33 16 22 C -0.07 0.13 2.97 36.00 0.11 0.23 16 23 O -0.53 1.12 11.64 -35.23 -0.41 0.71 16 24 Si 0.68 -1.34 30.81 -169.99 -5.24 -6.58 16 25 C -0.06 0.13 9.23 -39.61 -0.37 -0.24 16 26 C -0.09 0.07 9.05 -39.42 -0.36 -0.29 16 27 C -0.17 0.16 4.32 -26.73 -0.12 0.04 16 28 C -0.11 0.08 5.01 -26.73 -0.13 -0.06 16 29 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 30 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 31 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 32 H 0.07 0.05 8.13 -51.93 -0.42 -0.38 16 33 H 0.07 0.03 8.13 -51.93 -0.42 -0.39 16 34 H 0.08 0.10 7.76 -51.93 -0.40 -0.31 16 35 H 0.09 -0.06 8.10 -51.93 -0.42 -0.48 16 36 H 0.09 -0.26 8.14 -51.93 -0.42 -0.68 16 37 H 0.09 -0.43 8.14 -51.93 -0.42 -0.86 16 38 H 0.15 -0.60 6.60 -51.92 -0.34 -0.94 16 39 H 0.16 -0.98 8.14 -51.92 -0.42 -1.40 16 40 H 0.16 -0.70 7.50 -52.49 -0.39 -1.09 16 41 H 0.13 -0.18 7.96 -51.93 -0.41 -0.59 16 42 H 0.38 -2.43 8.43 45.56 0.38 -2.04 16 43 H -0.23 -0.06 5.27 56.52 0.30 0.23 16 44 H -0.26 -0.36 7.11 56.52 0.40 0.04 16 45 H 0.16 -0.66 7.08 -52.49 -0.37 -1.03 16 46 H 0.15 -0.30 8.06 -52.49 -0.42 -0.72 16 47 H 0.10 -0.35 8.14 -51.93 -0.42 -0.77 16 48 H 0.09 0.02 5.40 -51.93 -0.28 -0.26 16 49 H 0.08 0.03 7.80 -51.93 -0.41 -0.37 16 50 H 0.09 -0.14 8.11 -51.93 -0.42 -0.56 16 LS Contribution 416.10 15.07 6.27 6.27 Total: 0.00 -11.42 416.10 -11.84 -23.26 By element: Atomic # 1 Polarization: -8.03 SS G_CDS: -7.02 Total: -15.05 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -1.71 Total: 2.52 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -3.74 Total: -12.11 kcal Atomic # 9 Polarization: -0.38 SS G_CDS: 0.06 Total: -0.32 kcal Atomic # 14 Polarization: -1.34 SS G_CDS: -5.24 Total: -6.58 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -0.47 Total: 2.00 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -11.42 -11.84 -23.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_11680700_16464698.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -250.137 kcal (2) G-P(sol) polarization free energy of solvation -11.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -261.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -273.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.03 seconds