Wall clock time and date at job start Mon Mar 8 2021 08:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45202 * 109.47245 * 2 1 4 4 C 1.34231 * 116.99801 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99931 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00016 * 179.97438 * 4 3 2 7 7 H 1.09008 * 109.46618 * 60.00810 * 6 4 3 8 8 C 1.52998 * 109.47290 * 180.02562 * 6 4 3 9 9 C 1.52995 * 109.47149 * 180.02562 * 8 6 4 10 10 C 1.53009 * 109.47180 * 300.00350 * 9 8 6 11 11 F 1.39900 * 109.46830 * 299.99963 * 10 9 8 12 12 C 1.52998 * 109.46930 * 180.02562 * 10 9 8 13 13 S 1.81401 * 109.46948 * 184.99846 * 12 10 9 14 14 O 1.42102 * 110.54114 * 68.37199 * 13 12 10 15 15 O 1.42099 * 110.54366 * 291.62317 * 13 12 10 16 16 O 1.52198 * 104.45192 * 179.97438 * 13 12 10 17 17 C 1.35895 * 114.00126 * 75.00085 * 16 13 12 18 18 C 1.38676 * 120.04115 * 269.98142 * 17 16 13 19 19 C 1.38388 * 119.91886 * 180.02562 * 18 17 16 20 20 F 1.35095 * 119.99403 * 180.02562 * 19 18 17 21 21 C 1.38473 * 120.00405 * 359.74547 * 19 18 17 22 22 C 1.50696 * 119.95652 * 180.27579 * 21 19 18 23 23 O 1.42908 * 109.47042 * 195.23296 * 22 21 19 24 24 Si 1.86303 * 109.47208 * 315.23100 * 22 21 19 25 25 C 1.38251 * 120.08702 * 0.51149 * 21 19 18 26 26 C 1.38142 * 120.07778 * 359.48449 * 25 21 19 27 27 C 1.53001 * 109.47019 * 59.99900 * 10 9 8 28 28 C 1.52995 * 109.47227 * 300.00072 * 27 10 9 29 29 H 1.09003 * 109.46891 * 299.99798 * 1 2 3 30 30 H 1.09003 * 109.46973 * 59.99245 * 1 2 3 31 31 H 1.08997 * 109.47342 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46891 * 240.00202 * 2 1 3 33 33 H 1.09000 * 109.47050 * 120.00224 * 2 1 3 34 34 H 1.09000 * 109.46789 * 60.00359 * 8 6 4 35 35 H 1.08995 * 109.47419 * 300.00574 * 8 6 4 36 36 H 1.09002 * 109.47232 * 180.02562 * 9 8 6 37 37 H 1.09000 * 109.47317 * 60.00272 * 9 8 6 38 38 H 1.08998 * 109.47532 * 64.99984 * 12 10 9 39 39 H 1.09005 * 109.47364 * 304.99424 * 12 10 9 40 40 H 1.07994 * 120.03775 * 359.97438 * 18 17 16 41 41 H 1.08993 * 109.47357 * 75.23335 * 22 21 19 42 42 H 0.96694 * 113.99755 * 60.00248 * 23 22 21 43 43 H 1.48493 * 109.99907 * 58.68120 * 24 22 21 44 44 H 1.48502 * 110.00100 * 180.02562 * 24 22 21 45 45 H 1.08002 * 119.96411 * 179.77076 * 25 21 19 46 46 H 1.07998 * 119.99727 * 180.23517 * 26 25 21 47 47 H 1.09000 * 109.47058 * 60.00336 * 27 10 9 48 48 H 1.09003 * 109.46793 * 180.02562 * 27 10 9 49 49 H 1.09000 * 109.47317 * 300.00105 * 28 27 10 50 50 H 1.09002 * 109.47232 * 180.02562 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9209 2.9373 0.0000 7 1 3.5846 3.4699 0.8897 8 6 5.4488 2.8571 0.0001 9 6 6.0336 4.2709 0.0002 10 6 5.5621 5.0180 -1.2491 11 9 5.9933 4.3350 -2.3913 12 6 6.1475 6.4316 -1.2493 13 16 5.4723 7.3654 -2.6502 14 8 4.0870 7.6185 -2.4595 15 8 5.9592 6.8431 -3.8787 16 8 6.1224 8.7372 -2.5410 17 6 7.4252 8.7638 -2.9269 18 6 8.4289 8.5279 -1.9995 19 6 9.7547 8.5561 -2.3952 20 9 10.7337 8.3261 -1.4931 21 6 10.0776 8.8144 -3.7167 22 6 11.5214 8.8388 -4.1476 23 8 11.6254 9.4606 -5.4301 24 14 12.5236 9.8022 -2.9073 25 6 9.0774 9.0548 -4.6403 26 6 7.7527 9.0275 -4.2493 27 6 4.0342 5.0981 -1.2491 28 6 3.4494 3.6843 -1.2492 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 5.7847 2.3247 -0.8897 35 1 5.7847 2.3253 0.8902 36 1 7.1221 4.2138 -0.0002 37 1 5.6977 4.8031 0.8902 38 1 7.2323 6.3756 -1.3390 39 1 5.8853 6.9336 -0.3179 40 1 8.1762 8.3233 -0.9697 41 1 11.9002 7.8185 -4.2068 42 1 11.3057 10.3729 -5.4519 43 1 12.3982 9.1841 -1.5630 44 1 13.9494 9.8341 -3.3212 45 1 9.3316 9.2597 -5.6698 46 1 6.9723 9.2117 -4.9726 47 1 3.6983 5.6302 -0.3591 48 1 3.6983 5.6299 -2.1393 49 1 3.7853 3.1522 -2.1392 50 1 2.3609 3.7414 -1.2497 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_11680700_16464698.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:25:23 Heat of formation + Delta-G solvation = -273.347338 kcal Electronic energy + Delta-G solvation = -40393.579871 eV Core-core repulsion = 34731.174270 eV Total energy + Delta-G solvation = -5662.405601 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 421.123 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -50.49526 -49.09188 -42.37021 -41.80530 -39.81082 -39.13287 -38.51774 -37.69899 -37.51765 -37.38028 -34.26463 -32.66263 -32.32830 -32.11249 -31.99652 -29.10284 -27.25501 -25.18151 -24.33387 -24.24817 -23.79816 -23.46434 -22.03367 -21.72326 -20.88178 -19.87303 -19.14119 -19.02637 -18.81865 -18.58995 -17.98110 -17.72776 -17.70629 -17.57004 -17.20544 -17.15628 -16.79805 -16.67470 -16.29016 -16.15051 -15.87484 -15.56840 -15.33555 -15.22342 -15.04089 -14.89688 -14.55931 -14.40580 -14.30905 -14.08422 -13.91975 -13.74760 -13.70847 -13.59898 -13.49913 -13.44271 -13.31596 -13.22157 -13.20271 -13.12876 -12.93801 -12.70653 -12.62008 -12.48911 -12.46807 -12.20873 -11.97756 -11.76187 -11.58210 -11.47380 -11.37822 -11.15830 -10.90459 -10.25524 -9.78812 -5.00929 -1.34518 -0.34808 -0.20392 0.77847 1.04492 1.22963 1.58103 1.64277 1.92001 2.14866 2.26681 2.64709 2.80742 2.86973 3.06945 3.21682 3.22851 3.30835 3.32377 3.48088 3.51678 3.57052 3.66649 3.76650 3.81180 3.94037 3.97687 4.00509 4.01551 4.04759 4.12862 4.26561 4.28187 4.28851 4.31142 4.50649 4.52505 4.58763 4.60644 4.72829 4.77061 4.78553 4.86690 4.87455 4.91920 4.93905 4.97903 4.98011 5.06769 5.11273 5.22291 5.40859 5.45882 6.61133 6.68991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.464 3.536 5 O -0.540 6.540 6 C -0.077 4.077 7 H 0.148 0.852 8 C -0.110 4.110 9 C -0.123 4.123 10 C 0.125 3.875 11 F -0.212 7.212 12 C -0.671 4.671 13 S 2.587 3.413 14 O -0.943 6.943 15 O -0.968 6.968 16 O -0.657 6.657 17 C 0.068 3.932 18 C -0.157 4.157 19 C 0.101 3.899 20 F -0.120 7.120 21 C -0.126 4.126 22 C -0.068 4.068 23 O -0.546 6.546 24 Si 0.760 3.240 25 C -0.056 4.056 26 C -0.103 4.103 27 C -0.176 4.176 28 C -0.110 4.110 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.128 0.872 38 H 0.168 0.832 39 H 0.207 0.793 40 H 0.186 0.814 41 H 0.123 0.877 42 H 0.400 0.600 43 H -0.257 1.257 44 H -0.304 1.304 45 H 0.179 0.821 46 H 0.155 0.845 47 H 0.137 0.863 48 H 0.077 0.923 49 H 0.059 0.941 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.347 5.461 4.597 7.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.275 6.275 4 C 0.308 3.692 5 O -0.430 6.430 6 C -0.096 4.096 7 H 0.166 0.834 8 C -0.148 4.148 9 C -0.161 4.161 10 C 0.106 3.894 11 F -0.192 7.192 12 C -0.799 4.799 13 S 2.685 3.315 14 O -0.941 6.941 15 O -0.966 6.966 16 O -0.616 6.616 17 C 0.027 3.973 18 C -0.178 4.178 19 C 0.081 3.919 20 F -0.099 7.099 21 C -0.128 4.128 22 C -0.178 4.178 23 O -0.355 6.355 24 Si 0.664 3.336 25 C -0.073 4.073 26 C -0.123 4.123 27 C -0.214 4.214 28 C -0.148 4.148 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.114 0.886 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.146 0.854 38 H 0.186 0.814 39 H 0.224 0.776 40 H 0.203 0.797 41 H 0.140 0.860 42 H 0.252 0.748 43 H -0.182 1.182 44 H -0.232 1.232 45 H 0.196 0.804 46 H 0.173 0.827 47 H 0.155 0.845 48 H 0.096 0.904 49 H 0.078 0.922 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.236 4.878 4.487 6.632 hybrid contribution 0.141 -1.496 0.059 1.504 sum 0.377 3.382 4.545 5.678 Atomic orbital electron populations 1.21825 0.90581 1.04262 1.03818 1.23251 0.96995 0.79399 1.02375 1.86513 1.24172 1.33405 1.83438 1.24258 0.80612 0.93247 0.71052 1.90674 1.61170 1.44461 1.46704 1.21289 0.96456 0.88593 1.03247 0.83422 1.21462 0.91821 0.97603 1.03893 1.22162 1.03022 0.94555 0.96349 1.20813 0.94997 0.88217 0.85402 1.92945 1.91344 1.81728 1.53231 1.31490 1.15812 1.08534 1.24079 1.05655 0.74964 0.73764 0.77070 1.93641 1.30683 1.82550 1.87272 1.93655 1.80775 1.79418 1.42751 1.85736 1.31395 1.57510 1.86944 1.17919 0.77664 1.07638 0.94093 1.21426 0.90190 1.03766 1.02404 1.17104 0.84996 1.03167 0.86588 1.91606 1.59468 1.91971 1.66823 1.20753 0.98779 1.01163 0.92130 1.25064 0.95049 1.03575 0.94109 1.86502 1.86989 1.33396 1.28565 0.94393 0.76710 0.86850 0.75660 1.21030 0.89168 0.95803 1.01331 1.21718 0.99022 0.97277 0.94308 1.22800 0.92040 0.99154 1.07375 1.21462 1.02896 0.94206 0.96197 0.90988 0.91333 0.88621 0.91797 0.91258 0.92556 0.89484 0.88439 0.85401 0.81369 0.77613 0.79675 0.86000 0.74842 1.18249 1.23242 0.80377 0.82690 0.84533 0.90437 0.92227 0.88108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.45 10.29 71.98 0.74 1.19 16 2 C 0.05 0.10 6.19 71.98 0.45 0.54 16 3 O -0.36 -1.37 10.12 -51.43 -0.52 -1.89 16 4 C 0.46 2.30 7.26 71.23 0.52 2.82 16 5 O -0.54 -6.33 15.73 21.96 0.35 -5.99 16 6 C -0.08 0.16 2.63 -11.54 -0.03 0.13 16 7 H 0.15 -1.28 8.14 -2.38 -0.02 -1.30 16 8 C -0.11 0.18 4.37 30.59 0.13 0.32 16 9 C -0.12 0.89 5.00 30.60 0.15 1.05 16 10 C 0.13 -0.36 0.89 -10.79 -0.01 -0.37 16 11 F -0.21 -1.10 15.33 44.97 0.69 -0.41 16 12 C -0.67 4.90 4.78 71.98 0.34 5.24 16 13 S 2.59 5.19 4.41 -56.49 -0.25 4.94 16 14 O -0.94 -6.52 15.64 -118.57 -1.85 -8.37 16 15 O -0.97 -8.28 15.96 -118.57 -1.89 -10.17 16 16 O -0.66 -0.20 10.05 -61.46 -0.62 -0.82 16 17 C 0.07 -0.06 4.80 22.50 0.11 0.05 16 18 C -0.16 0.74 8.44 22.41 0.19 0.93 16 19 C 0.10 -0.30 6.66 22.36 0.15 -0.15 16 20 F -0.12 0.11 12.81 44.97 0.58 0.69 16 21 C -0.13 0.47 5.14 -19.81 -0.10 0.37 16 22 C -0.07 0.27 2.97 71.23 0.21 0.48 16 23 O -0.55 2.63 11.64 -148.98 -1.73 0.89 16 24 Si 0.76 -2.83 30.81 68.60 2.11 -0.71 16 25 C -0.06 0.26 9.23 22.25 0.21 0.46 16 26 C -0.10 0.14 9.05 22.37 0.20 0.34 16 27 C -0.18 0.48 4.32 30.59 0.13 0.61 16 28 C -0.11 0.12 5.01 30.59 0.15 0.28 16 29 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 30 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 31 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 32 H 0.06 0.19 8.13 -2.39 -0.02 0.17 16 33 H 0.07 0.13 8.13 -2.39 -0.02 0.11 16 34 H 0.06 0.22 7.76 -2.39 -0.02 0.21 16 35 H 0.09 -0.17 8.10 -2.39 -0.02 -0.19 16 36 H 0.10 -0.82 8.14 -2.39 -0.02 -0.84 16 37 H 0.13 -1.82 8.14 -2.39 -0.02 -1.83 16 38 H 0.17 -1.81 6.60 -2.39 -0.02 -1.82 16 39 H 0.21 -3.44 8.14 -2.39 -0.02 -3.46 16 40 H 0.19 -2.19 7.50 -2.91 -0.02 -2.21 16 41 H 0.12 -0.32 7.96 -2.39 -0.02 -0.34 16 42 H 0.40 -5.50 8.43 -74.06 -0.62 -6.13 16 43 H -0.26 -0.22 5.27 99.48 0.52 0.31 16 44 H -0.30 -1.30 7.11 99.48 0.71 -0.59 16 45 H 0.18 -1.57 7.08 -2.91 -0.02 -1.59 16 46 H 0.16 -0.43 8.06 -2.91 -0.02 -0.45 16 47 H 0.14 -1.29 8.14 -2.39 -0.02 -1.31 16 48 H 0.08 0.09 5.40 -2.39 -0.01 0.08 16 49 H 0.06 0.18 7.80 -2.39 -0.02 0.16 16 50 H 0.10 -0.28 8.11 -2.39 -0.02 -0.30 16 Total: 0.00 -30.57 416.10 0.62 -29.95 By element: Atomic # 1 Polarization: -22.62 SS G_CDS: 0.22 Total: -22.40 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: 3.54 Total: 14.29 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -6.27 Total: -26.36 kcal Atomic # 9 Polarization: -0.99 SS G_CDS: 1.27 Total: 0.28 kcal Atomic # 14 Polarization: -2.83 SS G_CDS: 2.11 Total: -0.71 kcal Atomic # 16 Polarization: 5.19 SS G_CDS: -0.25 Total: 4.94 kcal Total: -30.57 0.62 -29.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_11680700_16464698.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -243.395 kcal (2) G-P(sol) polarization free energy of solvation -30.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -273.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -273.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds