Wall clock time and date at job start Mon Mar 8 2021 08:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45198 * 109.47092 * 2 1 4 4 C 1.34226 * 116.99972 * 179.97438 * 3 2 1 5 5 O 1.20829 * 120.00243 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00120 * 180.02562 * 4 3 2 7 7 H 1.09002 * 112.85047 * 50.33376 * 6 4 3 8 8 C 1.53781 * 113.61772 * 181.53091 * 6 4 3 9 9 C 1.53777 * 87.08336 * 140.06093 * 8 6 4 10 10 F 1.39901 * 113.61056 * 89.11946 * 9 8 6 11 11 C 1.52998 * 113.61649 * 219.93585 * 9 8 6 12 12 S 1.81397 * 109.47133 * 180.02562 * 11 9 8 13 13 O 1.42099 * 110.54429 * 291.62369 * 12 11 9 14 14 O 1.42106 * 110.54134 * 68.37493 * 12 11 9 15 15 O 1.52205 * 104.44976 * 179.97438 * 12 11 9 16 16 C 1.35899 * 113.99851 * 74.99780 * 15 12 11 17 17 C 1.38673 * 120.03974 * 90.00033 * 16 15 12 18 18 C 1.38382 * 119.92066 * 179.97438 * 17 16 15 19 19 F 1.35099 * 119.99766 * 180.02562 * 18 17 16 20 20 C 1.38484 * 120.00418 * 0.02562 * 18 17 16 21 21 C 1.50700 * 119.95507 * 180.02562 * 20 18 17 22 22 O 1.42899 * 109.47243 * 75.00575 * 21 20 18 23 23 Si 1.86298 * 109.46674 * 195.00458 * 21 20 18 24 24 C 1.38248 * 120.08356 * 359.97438 * 20 18 17 25 25 C 1.38133 * 120.08116 * 359.74275 * 24 20 18 26 26 C 1.53775 * 87.07992 * 334.56762 * 9 8 6 27 27 H 1.08998 * 109.46948 * 299.99504 * 1 2 3 28 28 H 1.08998 * 109.47257 * 59.99725 * 1 2 3 29 29 H 1.09002 * 109.47144 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46999 * 239.99949 * 2 1 3 31 31 H 1.09000 * 109.47000 * 119.99798 * 2 1 3 32 32 H 1.08997 * 113.61673 * 254.61641 * 8 6 4 33 33 H 1.09005 * 113.61396 * 25.51470 * 8 6 4 34 34 H 1.09004 * 109.46784 * 300.00166 * 11 9 8 35 35 H 1.09000 * 109.47349 * 60.00231 * 11 9 8 36 36 H 1.07999 * 120.03740 * 359.95380 * 17 16 15 37 37 H 1.08997 * 109.47222 * 314.99922 * 21 20 18 38 38 H 0.96697 * 114.00370 * 179.97438 * 22 21 20 39 39 H 1.48499 * 110.00073 * 178.68284 * 23 21 20 40 40 H 1.48500 * 110.00160 * 300.00019 * 23 21 20 41 41 H 1.07995 * 119.95999 * 179.97438 * 24 20 18 42 42 H 1.08001 * 120.00764 * 180.28135 * 25 24 20 43 43 H 1.08993 * 113.61636 * 270.87622 * 26 9 8 44 44 H 1.09008 * 113.61006 * 139.97865 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9374 0.0012 7 1 3.4898 3.5734 0.7744 8 6 5.4578 2.9683 -0.0359 9 6 5.3322 4.1543 -1.0067 10 9 5.2744 5.3976 -0.3678 11 6 6.3482 4.1206 -2.1502 12 16 6.1012 5.5638 -3.2211 13 8 4.8672 5.4620 -3.9183 14 8 6.4616 6.7577 -2.5399 15 8 7.1589 5.4173 -4.3058 16 6 6.8733 4.4639 -5.2311 17 6 6.1566 4.7955 -6.3710 18 6 5.8676 3.8228 -7.3120 19 9 5.1699 4.1442 -8.4233 20 6 6.2935 2.5200 -7.1145 21 6 5.9786 1.4617 -8.1402 22 8 6.8256 1.6343 -9.2781 23 14 6.2668 -0.2241 -7.4015 24 6 7.0080 2.1892 -5.9781 25 6 7.3035 3.1585 -5.0394 26 6 3.9525 3.5935 -1.3893 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 5.9124 3.2319 0.9190 33 1 5.9017 2.0805 -0.4864 34 1 7.3578 4.1416 -1.7399 35 1 6.2110 3.2088 -2.7314 36 1 5.8241 5.8115 -6.5241 37 1 4.9363 1.5510 -8.4461 38 1 6.6781 0.9859 -9.9802 39 1 5.9295 -1.2773 -8.3926 40 1 7.6844 -0.3585 -6.9802 41 1 7.3388 1.1725 -5.8259 42 1 7.8657 2.8998 -4.1543 43 1 3.9847 2.8767 -2.2098 44 1 3.1917 4.3620 -1.5269 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_11680700_16464788.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:28:27 Heat of formation + Delta-G solvation = -242.485816 kcal Electronic energy + Delta-G solvation = -35904.377186 eV Core-core repulsion = 30554.385079 eV Total energy + Delta-G solvation = -5349.992107 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 393.092 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -50.18672 -49.17315 -42.39133 -41.77980 -39.71526 -39.28239 -38.51762 -37.66136 -37.47802 -37.39230 -32.79269 -32.72363 -32.25116 -31.63548 -27.23306 -27.13442 -26.86983 -24.56121 -23.98346 -23.58603 -22.27145 -21.72847 -20.80865 -19.91683 -19.25118 -19.11034 -18.77359 -18.68332 -17.91946 -17.66901 -17.59806 -17.54794 -17.30825 -16.98154 -16.78647 -16.47372 -16.14986 -16.03931 -15.84196 -15.45274 -15.34694 -15.27925 -14.62196 -14.55589 -14.42091 -14.29568 -14.13014 -13.88144 -13.77996 -13.63971 -13.57792 -13.49502 -13.44277 -13.19273 -13.02127 -12.97310 -12.89757 -12.84896 -12.46984 -12.39308 -12.35318 -11.87810 -11.80668 -11.50371 -11.44094 -11.35332 -10.58787 -10.37877 -10.06824 -4.91850 -1.35664 -0.39487 -0.21891 0.77492 1.06618 1.21512 1.61383 1.62726 1.90618 1.98063 2.33111 2.62530 2.74232 2.81851 2.87885 2.97175 3.12055 3.23659 3.31450 3.38356 3.51324 3.56664 3.72997 3.80070 3.87639 3.96065 4.04145 4.09266 4.17139 4.26943 4.38640 4.40573 4.42541 4.52264 4.57050 4.60248 4.66038 4.71504 4.76146 4.82282 4.87112 4.87597 4.94606 5.09623 5.18156 5.41533 5.47056 6.49927 6.67151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.362 6.362 4 C 0.478 3.522 5 O -0.525 6.525 6 C -0.112 4.112 7 H 0.144 0.856 8 C -0.111 4.111 9 C 0.089 3.911 10 F -0.191 7.191 11 C -0.652 4.652 12 S 2.584 3.416 13 O -0.960 6.960 14 O -0.957 6.957 15 O -0.662 6.662 16 C 0.080 3.920 17 C -0.147 4.147 18 C 0.124 3.876 19 F -0.134 7.134 20 C -0.095 4.095 21 C -0.106 4.106 22 O -0.557 6.557 23 Si 0.788 3.212 24 C -0.065 4.065 25 C -0.121 4.121 26 C -0.148 4.148 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.137 0.863 34 H 0.193 0.807 35 H 0.198 0.802 36 H 0.147 0.853 37 H 0.088 0.912 38 H 0.399 0.601 39 H -0.288 1.288 40 H -0.267 1.267 41 H 0.185 0.815 42 H 0.201 0.799 43 H 0.136 0.864 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.307 -9.520 1.902 9.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.279 6.279 4 C 0.322 3.678 5 O -0.415 6.415 6 C -0.131 4.131 7 H 0.161 0.839 8 C -0.150 4.150 9 C 0.070 3.930 10 F -0.171 7.171 11 C -0.781 4.781 12 S 2.683 3.317 13 O -0.959 6.959 14 O -0.955 6.955 15 O -0.621 6.621 16 C 0.038 3.962 17 C -0.168 4.168 18 C 0.105 3.895 19 F -0.113 7.113 20 C -0.097 4.097 21 C -0.212 4.212 22 O -0.368 6.368 23 Si 0.690 3.310 24 C -0.083 4.083 25 C -0.141 4.141 26 C -0.186 4.186 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.114 0.886 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.126 0.874 33 H 0.155 0.845 34 H 0.210 0.790 35 H 0.216 0.784 36 H 0.165 0.835 37 H 0.106 0.894 38 H 0.250 0.750 39 H -0.215 1.215 40 H -0.193 1.193 41 H 0.202 0.798 42 H 0.218 0.782 43 H 0.155 0.845 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.594 -9.233 1.900 9.445 hybrid contribution 0.064 0.541 -1.258 1.371 sum -0.530 -8.692 0.641 8.732 Atomic orbital electron populations 1.21841 0.91234 1.04189 1.03577 1.23277 0.96573 0.79119 1.02912 1.86534 1.24291 1.33760 1.83311 1.23548 0.80631 0.92232 0.71383 1.90671 1.60886 1.43585 1.46325 1.22580 0.97880 0.90945 1.01718 0.83856 1.23619 0.93184 0.97159 1.00993 1.21445 0.96500 0.81980 0.93112 1.92988 1.97208 1.43644 1.83302 1.31262 1.11766 1.23266 1.11790 1.05654 0.73285 0.77444 0.75269 1.93649 1.45426 1.87483 1.69325 1.93639 1.82535 1.44608 1.74703 1.85765 1.67545 1.60959 1.47828 1.17950 1.01987 0.86663 0.89596 1.21359 1.00047 1.01561 0.93822 1.17315 0.95378 0.93061 0.83796 1.91528 1.76266 1.93323 1.50132 1.19889 0.99863 0.92498 0.97430 1.25281 0.97532 1.08883 0.89501 1.86542 1.62112 1.58669 1.29456 0.93955 0.81873 0.69705 0.85480 1.21267 0.94333 1.01695 0.90960 1.21871 0.99932 0.88698 1.03577 1.23928 0.95627 1.01979 0.97055 0.91686 0.91264 0.88559 0.90484 0.91314 0.87387 0.84492 0.78970 0.78428 0.83472 0.89365 0.75016 1.21531 1.19315 0.79788 0.78182 0.84544 0.87632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.87 10.29 71.98 0.74 1.61 16 2 C 0.05 -0.14 6.19 71.98 0.45 0.30 16 3 O -0.36 -0.04 10.22 -51.38 -0.53 -0.56 16 4 C 0.48 -0.30 7.49 71.24 0.53 0.24 16 5 O -0.53 -1.80 15.66 21.95 0.34 -1.46 16 6 C -0.11 0.57 4.23 -11.01 -0.05 0.52 16 7 H 0.14 -0.94 8.14 -2.39 -0.02 -0.96 16 8 C -0.11 0.84 6.85 31.12 0.21 1.05 16 9 C 0.09 -0.43 1.62 -10.27 -0.02 -0.44 16 10 F -0.19 -0.46 16.28 44.97 0.73 0.27 16 11 C -0.65 5.84 5.19 71.98 0.37 6.21 16 12 S 2.58 6.60 4.89 -56.49 -0.28 6.32 16 13 O -0.96 -5.90 16.26 -118.57 -1.93 -7.83 16 14 O -0.96 -11.49 17.53 -118.57 -2.08 -13.57 16 15 O -0.66 -1.20 10.05 -61.51 -0.62 -1.81 16 16 C 0.08 -0.01 4.79 22.50 0.11 0.10 16 17 C -0.15 -0.57 9.03 22.41 0.20 -0.37 16 18 C 0.12 0.46 7.24 22.36 0.16 0.62 16 19 F -0.13 -0.98 16.75 44.97 0.75 -0.22 16 20 C -0.09 0.13 5.30 -19.80 -0.10 0.03 16 21 C -0.11 0.37 2.44 71.24 0.17 0.54 16 22 O -0.56 -0.11 12.86 -148.98 -1.92 -2.03 16 23 Si 0.79 -6.57 30.19 68.60 2.07 -4.50 16 24 C -0.07 0.49 8.65 22.25 0.19 0.68 16 25 C -0.12 0.99 8.47 22.37 0.19 1.18 16 26 C -0.15 0.86 7.08 31.12 0.22 1.08 16 27 H 0.06 -0.32 8.14 -2.39 -0.02 -0.34 16 28 H 0.07 -0.38 8.14 -2.39 -0.02 -0.40 16 29 H 0.10 -0.83 8.14 -2.39 -0.02 -0.85 16 30 H 0.08 -0.29 8.13 -2.39 -0.02 -0.31 16 31 H 0.07 -0.15 8.13 -2.39 -0.02 -0.17 16 32 H 0.11 -0.90 8.14 -2.39 -0.02 -0.92 16 33 H 0.14 -1.40 7.41 -2.38 -0.02 -1.42 16 34 H 0.19 -2.92 8.14 -2.39 -0.02 -2.94 16 35 H 0.20 -3.43 6.43 -2.39 -0.02 -3.45 16 36 H 0.15 0.67 8.06 -2.91 -0.02 0.65 16 37 H 0.09 -0.44 7.90 -2.39 -0.02 -0.45 16 38 H 0.40 -3.07 8.74 -74.06 -0.65 -3.72 16 39 H -0.29 0.78 7.11 99.48 0.71 1.49 16 40 H -0.27 1.37 6.74 99.48 0.67 2.04 16 41 H 0.19 -2.48 4.89 -2.91 -0.01 -2.50 16 42 H 0.20 -3.60 7.52 -2.91 -0.02 -3.62 16 43 H 0.14 -1.37 7.92 -2.39 -0.02 -1.39 16 44 H 0.11 -0.50 8.14 -2.38 -0.02 -0.52 16 Total: 0.00 -32.19 391.54 0.37 -31.82 By element: Atomic # 1 Polarization: -20.20 SS G_CDS: 0.43 Total: -19.78 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 3.39 Total: 13.35 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -6.72 Total: -27.26 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 1.49 Total: 0.05 kcal Atomic # 14 Polarization: -6.57 SS G_CDS: 2.07 Total: -4.50 kcal Atomic # 16 Polarization: 6.60 SS G_CDS: -0.28 Total: 6.32 kcal Total: -32.19 0.37 -31.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_11680700_16464788.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -210.662 kcal (2) G-P(sol) polarization free energy of solvation -32.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -242.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds