Wall clock time and date at job start Mon Mar 8 2021 08:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00202 * 2 1 4 4 C 1.53005 * 112.85018 * 291.85664 * 3 2 1 5 5 F 1.39896 * 109.46900 * 65.65027 * 4 3 2 6 6 F 1.39895 * 109.46950 * 185.65316 * 4 3 2 7 7 F 1.39904 * 109.46932 * 305.65171 * 4 3 2 8 8 C 1.53782 * 113.61395 * 160.54867 * 3 2 1 9 9 C 1.53782 * 87.08147 * 270.88392 * 8 3 2 10 10 H 1.09002 * 113.60793 * 220.01789 * 9 8 3 11 11 C 1.52995 * 113.68817 * 89.12657 * 9 8 3 12 12 S 1.81401 * 109.46859 * 87.46691 * 11 9 8 13 13 O 1.42105 * 110.54048 * 291.61760 * 12 11 9 14 14 O 1.42105 * 110.54842 * 68.37420 * 12 11 9 15 15 O 1.52198 * 104.45056 * 179.97438 * 12 11 9 16 16 C 1.35904 * 114.00095 * 74.99598 * 15 12 11 17 17 C 1.38670 * 120.04108 * 269.72701 * 16 15 12 18 18 C 1.38383 * 119.91887 * 179.74797 * 17 16 15 19 19 F 1.35096 * 120.00388 * 180.25429 * 18 17 16 20 20 C 1.38482 * 120.00463 * 0.55284 * 18 17 16 21 21 C 1.50699 * 119.96158 * 179.72716 * 20 18 17 22 22 O 1.42893 * 109.47230 * 194.97450 * 21 20 18 23 23 Si 1.86298 * 109.46585 * 314.97545 * 21 20 18 24 24 C 1.38256 * 120.07995 * 359.69883 * 20 18 17 25 25 C 1.38129 * 120.08428 * 0.02674 * 24 20 18 26 26 C 1.53780 * 113.61717 * 63.05173 * 3 2 1 27 27 H 1.09007 * 109.46967 * 66.33976 * 1 2 3 28 28 H 1.09008 * 109.47199 * 306.34323 * 1 2 3 29 29 H 1.08994 * 109.47311 * 186.34239 * 1 2 3 30 30 H 1.08999 * 113.61681 * 25.43298 * 8 3 2 31 31 H 1.09008 * 113.61282 * 156.33497 * 8 3 2 32 32 H 1.08999 * 109.46806 * 207.45696 * 11 9 8 33 33 H 1.08994 * 109.47274 * 327.46241 * 11 9 8 34 34 H 1.07996 * 120.04049 * 0.02562 * 17 16 15 35 35 H 1.08997 * 109.47050 * 74.96970 * 21 20 18 36 36 H 0.96698 * 114.00057 * 60.00108 * 22 21 20 37 37 H 1.48508 * 109.99861 * 180.02562 * 23 21 20 38 38 H 1.48497 * 110.00154 * 301.31767 * 23 21 20 39 39 H 1.08004 * 119.95784 * 180.02562 * 24 20 18 40 40 H 1.07997 * 120.00219 * 179.97438 * 25 24 20 41 41 H 1.08992 * 113.61951 * 203.66292 * 26 3 2 42 42 H 1.09004 * 113.61070 * 334.48525 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.7724 2.0617 -1.3086 5 9 0.4054 2.3200 -1.4561 6 9 2.4754 3.2709 -1.2827 7 9 2.2190 1.2855 -2.3836 8 6 3.4746 1.3277 0.4692 9 6 2.9322 1.5111 1.8965 10 1 3.5085 2.2165 2.4952 11 6 2.6633 0.1934 2.6259 12 16 4.1778 -0.3564 3.4592 13 8 5.1598 -0.7405 2.5065 14 8 4.5009 0.5161 4.5334 15 8 3.7850 -1.6596 4.1402 16 6 3.6630 -2.7127 3.2898 17 6 2.4397 -2.9891 2.6981 18 6 2.3196 -4.0589 1.8285 19 9 1.1300 -4.3266 1.2471 20 6 3.4174 -4.8590 1.5591 21 6 3.2840 -6.0274 0.6169 22 8 4.4145 -6.8890 0.7634 23 14 1.7280 -6.9714 1.0149 24 6 4.6358 -4.5867 2.1532 25 6 4.7610 -3.5163 3.0172 26 6 1.6775 2.1280 1.2560 27 1 -0.3633 0.4124 -0.9414 28 1 -0.3634 0.6091 0.8278 29 1 -0.3633 -1.0213 0.1135 30 1 3.9959 0.3824 0.3184 31 1 4.0376 2.1860 0.1024 32 1 1.8755 0.3413 3.3646 33 1 2.3495 -0.5627 1.9063 34 1 1.5829 -2.3675 2.9120 35 1 3.2354 -5.6630 -0.4092 36 1 4.5203 -7.2511 1.6537 37 1 1.5850 -8.1268 0.0929 38 1 1.7677 -7.4464 2.4212 39 1 5.4908 -5.2117 1.9413 40 1 5.7133 -3.3051 3.4808 41 1 1.7493 3.2049 1.1044 42 1 0.7473 1.8296 1.7395 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_11680700_17541816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:57:25 Heat of formation + Delta-G solvation = -298.553158 kcal Electronic energy + Delta-G solvation = -38807.797467 eV Core-core repulsion = 32963.374479 eV Total energy + Delta-G solvation = -5844.422988 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 401.073 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -51.22145 -50.52264 -48.77799 -48.64773 -42.39941 -41.66761 -39.92663 -38.39632 -37.69330 -37.51492 -37.25256 -32.60731 -32.21990 -31.78529 -28.64847 -27.92827 -27.33957 -27.00063 -24.52842 -24.03487 -23.59079 -21.92186 -20.91019 -20.05701 -19.78276 -19.51508 -19.36779 -19.02586 -18.91439 -18.66091 -17.69393 -17.55572 -17.41006 -17.25040 -16.94025 -16.69086 -16.36749 -16.05592 -15.97915 -15.73185 -15.58359 -15.52800 -15.46065 -15.36600 -15.11465 -14.93025 -14.84289 -14.76041 -14.47961 -14.46431 -14.20425 -14.02937 -13.65540 -13.51681 -13.42663 -13.40488 -13.29588 -13.21082 -13.17599 -12.83258 -12.68462 -12.58462 -12.41873 -12.23766 -12.04473 -11.62930 -11.15542 -10.95170 -10.37892 -9.91925 -4.88059 -1.29763 -0.41084 -0.32741 0.79495 1.10101 1.47798 1.50624 1.82322 1.88722 2.01696 2.32490 2.43944 2.53744 2.66435 2.70466 2.74153 2.92336 2.99577 3.03875 3.11367 3.25318 3.30677 3.40302 3.44202 3.58148 3.74860 3.87478 3.93617 3.99346 4.12852 4.17338 4.19456 4.20827 4.32137 4.39153 4.40716 4.50963 4.53388 4.57201 4.58579 4.65365 4.76738 4.85340 5.32916 5.51026 6.15760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.333 6.333 3 C 0.042 3.958 4 C 0.439 3.561 5 F -0.181 7.181 6 F -0.175 7.175 7 F -0.173 7.173 8 C -0.125 4.125 9 C -0.091 4.091 10 H 0.111 0.889 11 C -0.645 4.645 12 S 2.591 3.409 13 O -0.939 6.939 14 O -0.918 6.918 15 O -0.659 6.659 16 C 0.090 3.910 17 C -0.156 4.156 18 C 0.118 3.882 19 F -0.099 7.099 20 C -0.128 4.128 21 C -0.076 4.076 22 O -0.526 6.526 23 Si 0.677 3.323 24 C -0.065 4.065 25 C -0.089 4.089 26 C -0.139 4.139 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.124 0.876 32 H 0.148 0.852 33 H 0.153 0.847 34 H 0.158 0.842 35 H 0.133 0.867 36 H 0.378 0.622 37 H -0.247 1.247 38 H -0.254 1.254 39 H 0.158 0.842 40 H 0.152 0.848 41 H 0.115 0.885 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.896 -0.442 0.871 4.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.250 6.250 3 C 0.000 4.000 4 C 0.384 3.616 5 F -0.162 7.162 6 F -0.156 7.156 7 F -0.154 7.154 8 C -0.162 4.162 9 C -0.110 4.110 10 H 0.129 0.871 11 C -0.771 4.771 12 S 2.686 3.314 13 O -0.937 6.937 14 O -0.917 6.917 15 O -0.618 6.618 16 C 0.048 3.952 17 C -0.177 4.177 18 C 0.099 3.901 19 F -0.077 7.077 20 C -0.130 4.130 21 C -0.185 4.185 22 O -0.332 6.332 23 Si 0.575 3.425 24 C -0.083 4.083 25 C -0.109 4.109 26 C -0.177 4.177 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.121 0.879 30 H 0.128 0.872 31 H 0.142 0.858 32 H 0.166 0.834 33 H 0.170 0.830 34 H 0.176 0.824 35 H 0.151 0.849 36 H 0.226 0.774 37 H -0.171 1.171 38 H -0.178 1.178 39 H 0.175 0.825 40 H 0.169 0.831 41 H 0.133 0.867 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.472 -1.243 0.908 3.798 hybrid contribution -0.240 0.352 0.017 0.427 sum -3.712 -0.891 0.925 3.928 Atomic orbital electron populations 1.23255 0.79322 1.04423 1.02101 1.88044 1.21314 1.21834 1.93844 1.23898 0.99797 0.86610 0.89736 1.21147 0.74148 0.78429 0.87878 1.93176 1.32241 1.94355 1.96474 1.93189 1.78826 1.46912 1.96683 1.93230 1.88976 1.74538 1.58643 1.23449 0.91931 1.06827 0.93943 1.21695 0.99211 0.94266 0.95876 0.87093 1.30870 1.23894 1.08046 1.14310 1.05682 0.76713 0.74131 0.74826 1.93678 1.56155 1.79109 1.64801 1.93681 1.81908 1.63730 1.52337 1.85767 1.90294 1.33321 1.52400 1.17633 0.94535 0.89815 0.93210 1.21151 0.98000 0.99825 0.98724 1.16816 0.81214 0.96221 0.95884 1.91219 1.43408 1.90731 1.82362 1.20686 0.93393 0.98458 1.00449 1.25001 0.99896 0.91474 1.02145 1.86622 1.45974 1.64417 1.36178 0.94674 0.83980 0.82647 0.81186 1.20844 0.97004 0.96321 0.94142 1.21446 0.98554 0.93742 0.97153 1.23617 0.99460 1.01089 0.93549 0.92223 0.92556 0.87854 0.87209 0.85811 0.83429 0.82951 0.82443 0.84923 0.77364 1.17115 1.17827 0.82451 0.83054 0.86683 0.88291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 10.28 101.05 1.04 1.02 16 2 O -0.33 0.47 8.52 -35.23 -0.30 0.17 16 3 C 0.04 -0.06 0.79 -89.80 -0.07 -0.13 16 4 C 0.44 0.14 2.66 37.16 0.10 0.24 16 5 F -0.18 -0.11 14.94 2.25 0.03 -0.07 16 6 F -0.17 -0.07 15.72 2.25 0.04 -0.04 16 7 F -0.17 -0.36 17.26 2.25 0.04 -0.32 16 8 C -0.12 0.24 6.92 -25.92 -0.18 0.06 16 9 C -0.09 0.26 3.84 -89.81 -0.34 -0.08 16 10 H 0.11 -0.44 8.13 -51.93 -0.42 -0.86 16 11 C -0.65 2.07 5.06 37.16 0.19 2.26 16 12 S 2.59 0.56 5.16 -107.50 -0.55 0.01 16 13 O -0.94 -1.90 16.26 -67.03 -1.09 -2.99 16 14 O -0.92 -3.36 18.09 -67.04 -1.21 -4.57 16 15 O -0.66 -0.08 10.05 -51.76 -0.52 -0.60 16 16 C 0.09 -0.04 4.79 -39.23 -0.19 -0.23 16 17 C -0.16 0.34 8.45 -39.37 -0.33 0.00 16 18 C 0.12 -0.22 6.66 -39.44 -0.26 -0.48 16 19 F -0.10 0.27 13.72 2.25 0.03 0.30 16 20 C -0.13 0.20 5.13 -104.53 -0.54 -0.34 16 21 C -0.08 0.12 2.97 36.01 0.11 0.23 16 22 O -0.53 0.49 11.64 -35.23 -0.41 0.08 16 23 Si 0.68 -0.86 29.58 -169.99 -5.03 -5.89 16 24 C -0.07 0.11 9.23 -39.61 -0.37 -0.25 16 25 C -0.09 0.06 9.05 -39.43 -0.36 -0.29 16 26 C -0.14 0.47 6.62 -25.92 -0.17 0.30 16 27 H 0.06 -0.13 6.32 -51.92 -0.33 -0.46 16 28 H 0.06 -0.25 6.39 -51.92 -0.33 -0.58 16 29 H 0.10 -0.48 8.14 -51.93 -0.42 -0.91 16 30 H 0.11 -0.17 8.10 -51.93 -0.42 -0.59 16 31 H 0.12 -0.38 7.30 -51.92 -0.38 -0.76 16 32 H 0.15 -0.86 8.14 -51.92 -0.42 -1.29 16 33 H 0.15 -0.58 4.61 -51.93 -0.24 -0.82 16 34 H 0.16 -0.79 7.52 -52.49 -0.39 -1.18 16 35 H 0.13 -0.29 7.96 -51.93 -0.41 -0.71 16 36 H 0.38 -1.56 8.43 45.56 0.38 -1.17 16 37 H -0.25 -0.41 7.11 56.52 0.40 -0.01 16 38 H -0.25 -0.20 7.11 56.52 0.40 0.20 16 39 H 0.16 -0.52 7.08 -52.48 -0.37 -0.89 16 40 H 0.15 -0.26 8.06 -52.49 -0.42 -0.68 16 41 H 0.11 -0.48 7.69 -51.93 -0.40 -0.88 16 42 H 0.10 -0.46 6.48 -51.93 -0.34 -0.80 16 LS Contribution 367.95 15.07 5.55 5.55 Total: 0.00 -9.54 367.95 -8.93 -18.47 By element: Atomic # 1 Polarization: -8.26 SS G_CDS: -4.12 Total: -12.38 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -1.38 Total: 2.30 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: -3.53 Total: -7.92 kcal Atomic # 9 Polarization: -0.28 SS G_CDS: 0.14 Total: -0.14 kcal Atomic # 14 Polarization: -0.86 SS G_CDS: -5.03 Total: -5.89 kcal Atomic # 16 Polarization: 0.56 SS G_CDS: -0.55 Total: 0.01 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -9.54 -8.93 -18.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_11680700_17541816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -280.088 kcal (2) G-P(sol) polarization free energy of solvation -9.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -289.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -298.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds