Wall clock time and date at job start Mon Mar 8 2021 09:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86295 * 109.47221 * 2 1 4 4 C 1.50699 * 109.47160 * 120.00020 * 2 1 3 5 5 C 1.38472 * 119.96025 * 195.02259 * 4 2 1 6 6 F 1.35098 * 119.99651 * 359.97438 * 5 4 2 7 7 C 1.38383 * 120.00403 * 179.97438 * 5 4 2 8 8 C 1.38669 * 119.92182 * 0.02562 * 7 5 4 9 9 O 1.35903 * 120.04092 * 180.25374 * 8 7 5 10 10 S 1.52199 * 114.00021 * 271.30752 * 9 8 7 11 11 O 1.42107 * 104.27857 * 41.53441 * 10 9 8 12 12 O 1.42098 * 104.27752 * 169.38921 * 10 9 8 13 13 C 1.81400 * 104.44939 * 285.46343 * 10 9 8 14 14 H 1.08996 * 112.84850 * 53.79886 * 13 10 9 15 15 C 1.53781 * 113.61240 * 184.99826 * 13 10 9 16 16 C 1.53786 * 87.07974 * 89.11771 * 15 13 10 17 17 H 1.09002 * 113.61122 * 270.79634 * 16 15 13 18 18 C 1.50699 * 113.61545 * 139.98329 * 16 15 13 19 19 C 1.38240 * 119.99587 * 299.72179 * 18 16 15 20 20 C 1.38238 * 119.99817 * 179.74361 * 19 18 16 21 21 C 1.38234 * 119.99491 * 0.55653 * 20 19 18 22 22 C 1.38226 * 120.00648 * 359.69642 * 21 20 19 23 23 C 1.38232 * 120.00497 * 119.99498 * 18 16 15 24 24 C 1.53776 * 113.61295 * 282.60650 * 13 10 9 25 25 C 1.38763 * 119.91551 * 359.97438 * 8 7 5 26 26 C 1.38135 * 119.99523 * 0.02562 * 25 8 7 27 27 H 0.96698 * 114.00006 * 299.99961 * 1 2 3 28 28 H 1.09000 * 109.47074 * 240.00110 * 2 1 3 29 29 H 1.48496 * 110.00176 * 299.99908 * 3 2 1 30 30 H 1.48505 * 109.99710 * 61.31859 * 3 2 1 31 31 H 1.08007 * 120.03496 * 179.97438 * 7 5 4 32 32 H 1.09002 * 113.61081 * 203.66026 * 15 13 10 33 33 H 1.08995 * 113.61658 * 334.48397 * 15 13 10 34 34 H 1.07998 * 120.00155 * 0.02562 * 19 18 16 35 35 H 1.08003 * 119.99945 * 180.27090 * 20 19 18 36 36 H 1.08006 * 119.99650 * 179.72746 * 21 20 19 37 37 H 1.08004 * 120.00571 * 180.02562 * 22 21 20 38 38 H 1.08004 * 119.99776 * 0.02562 * 23 18 16 39 39 H 1.09003 * 113.61658 * 25.42944 * 24 13 10 40 40 H 1.08996 * 113.61718 * 156.33865 * 24 13 10 41 41 H 1.08003 * 120.00101 * 179.97438 * 25 8 7 42 42 H 1.07999 * 119.95950 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 3.2543 -0.5740 1.6161 6 9 4.0939 0.1952 0.8890 7 6 3.7164 -1.2255 2.7461 8 6 2.8534 -2.0151 3.4909 9 8 3.3034 -2.6518 4.6040 10 16 3.8819 -4.0337 4.3354 11 8 4.6420 -3.8703 3.1458 12 8 4.5060 -4.3963 5.5594 13 6 2.4321 -5.0791 4.0258 14 1 1.7834 -4.6825 3.2448 15 6 2.7732 -6.5678 3.8463 16 6 2.6146 -6.7069 5.3696 17 1 3.5360 -6.5252 5.9229 18 6 1.9197 -7.9760 5.7909 19 6 0.6302 -8.2325 5.3636 20 6 -0.0053 -9.3991 5.7457 21 6 0.6445 -10.3038 6.5643 22 6 1.9319 -10.0450 6.9958 23 6 2.5695 -8.8810 6.6091 24 6 1.6802 -5.4838 5.3046 25 6 1.5283 -2.1495 3.1014 26 6 1.0707 -1.4976 1.9728 27 1 -0.3933 0.4417 0.7650 28 1 1.7923 -0.5138 -0.8900 29 1 1.5616 2.4678 -1.2085 30 1 1.5879 2.4585 1.2243 31 1 4.7483 -1.1198 3.0471 32 1 2.0262 -7.1213 3.2773 33 1 3.7896 -6.7435 3.4940 34 1 0.1210 -7.5235 4.7277 35 1 -1.0111 -9.6015 5.4083 36 1 0.1463 -11.2133 6.8664 37 1 2.4397 -10.7520 7.6351 38 1 3.5752 -8.6784 6.9468 39 1 1.8153 -4.7851 6.1303 40 1 0.6350 -5.7416 5.1336 41 1 0.8550 -2.7644 3.6803 42 1 0.0394 -1.6029 1.6700 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_11680700_17781816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:05:40 Heat of formation + Delta-G solvation = -85.954784 kcal Electronic energy + Delta-G solvation = -30560.493466 eV Core-core repulsion = 26094.966611 eV Total energy + Delta-G solvation = -4465.526855 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 365.086 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -50.47003 -42.40016 -41.23976 -39.94502 -39.03270 -38.30885 -37.70001 -37.26997 -32.46148 -32.41733 -32.11131 -31.84098 -27.41808 -27.22024 -27.03285 -24.51709 -23.99752 -23.72112 -22.97512 -21.83112 -21.06351 -19.67200 -19.14190 -18.90934 -18.62665 -18.22791 -17.68516 -17.46956 -17.23902 -16.94473 -16.48524 -16.43234 -16.07161 -16.01209 -15.56440 -15.44454 -15.32416 -14.98629 -14.57327 -14.44727 -14.30726 -14.26094 -14.01836 -13.86400 -13.67088 -13.45650 -13.43445 -13.31355 -13.28051 -13.19793 -12.90308 -12.65924 -12.55234 -12.06556 -12.04283 -11.98204 -11.60740 -11.47220 -11.15378 -10.37297 -9.95399 -9.87458 -9.66109 -4.84880 -1.27077 -0.44890 -0.30350 0.34728 0.44658 0.79700 1.10087 1.51739 1.81640 1.99065 2.36203 2.58002 2.65338 2.75495 2.86185 2.97028 3.08274 3.14015 3.31699 3.42669 3.45404 3.57747 3.62110 3.86818 3.89949 3.98618 4.05001 4.17097 4.22280 4.24074 4.31051 4.35787 4.41016 4.46958 4.51935 4.52502 4.56190 4.57475 4.68478 4.69864 4.76815 4.97335 5.03067 5.10137 5.31441 5.51190 5.58712 5.64205 6.03772 6.12476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.527 6.527 2 C -0.076 4.076 3 Si 0.677 3.323 4 C -0.129 4.129 5 C 0.118 3.882 6 F -0.097 7.097 7 C -0.117 4.117 8 C 0.090 3.910 9 O -0.656 6.656 10 S 2.606 3.394 11 O -0.943 6.943 12 O -0.914 6.914 13 C -0.660 4.660 14 H 0.148 0.852 15 C -0.085 4.085 16 C -0.092 4.092 17 H 0.121 0.879 18 C -0.073 4.073 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.121 4.121 22 C -0.117 4.117 23 C -0.112 4.112 24 C -0.090 4.090 25 C -0.130 4.130 26 C -0.067 4.067 27 H 0.378 0.622 28 H 0.134 0.866 29 H -0.246 1.246 30 H -0.254 1.254 31 H 0.160 0.840 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.152 0.848 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.400 -0.859 -0.595 3.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.333 6.333 2 C -0.185 4.185 3 Si 0.576 3.424 4 C -0.131 4.131 5 C 0.098 3.902 6 F -0.075 7.075 7 C -0.138 4.138 8 C 0.048 3.952 9 O -0.615 6.615 10 S 2.700 3.300 11 O -0.941 6.941 12 O -0.912 6.912 13 C -0.766 4.766 14 H 0.166 0.834 15 C -0.123 4.123 16 C -0.110 4.110 17 H 0.139 0.861 18 C -0.073 4.073 19 C -0.136 4.136 20 C -0.136 4.136 21 C -0.139 4.139 22 C -0.135 4.135 23 C -0.130 4.130 24 C -0.128 4.128 25 C -0.150 4.150 26 C -0.085 4.085 27 H 0.226 0.774 28 H 0.151 0.849 29 H -0.171 1.171 30 H -0.178 1.178 31 H 0.178 0.822 32 H 0.127 0.873 33 H 0.101 0.899 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.106 0.894 40 H 0.125 0.875 41 H 0.169 0.831 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.829 -0.036 -0.870 2.960 hybrid contribution -1.424 -0.557 0.450 1.594 sum -4.253 -0.594 -0.420 4.315 Atomic orbital electron populations 1.86614 1.16995 1.80094 1.49588 1.24993 0.84566 1.11428 0.97524 0.94474 0.92997 0.73268 0.81707 1.20682 0.92759 1.00094 0.99594 1.16937 0.87342 0.94496 0.91420 1.91229 1.69562 1.71098 1.75660 1.21237 1.02059 0.96525 0.93954 1.17654 0.93143 0.99512 0.84870 1.85763 1.82424 1.49688 1.43630 1.05258 0.75836 0.74135 0.74769 1.93677 1.67635 1.82500 1.50333 1.93658 1.71866 1.81066 1.44594 1.32555 1.21482 1.12723 1.09875 0.83368 1.22644 1.03718 0.89112 0.96858 1.22002 1.00125 0.92656 0.96252 0.86103 1.19514 0.94411 0.95311 0.98031 1.20999 0.94561 0.97537 1.00515 1.21167 1.00032 0.94261 0.98132 1.21227 0.95204 0.99562 0.97932 1.21213 0.95186 0.97238 0.99815 1.21143 1.00160 0.94108 0.97619 1.22755 0.99968 0.97381 0.92690 1.21459 0.93556 1.02049 0.97969 1.20763 1.01007 0.94062 0.92661 0.77387 0.84902 1.17053 1.17781 0.82188 0.87279 0.89934 0.86041 0.85945 0.85967 0.85807 0.85693 0.89435 0.87473 0.83080 0.82457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.70 11.64 -35.23 -0.41 0.29 16 2 C -0.08 0.12 2.97 36.01 0.11 0.23 16 3 Si 0.68 -0.65 29.58 -169.99 -5.03 -5.68 16 4 C -0.13 0.19 5.13 -104.53 -0.54 -0.35 16 5 C 0.12 -0.06 6.66 -39.44 -0.26 -0.32 16 6 F -0.10 0.10 13.72 2.25 0.03 0.13 16 7 C -0.12 -0.04 8.94 -39.37 -0.35 -0.39 16 8 C 0.09 0.01 4.82 -39.23 -0.19 -0.18 16 9 O -0.66 -0.57 10.05 -51.76 -0.52 -1.09 16 10 S 2.61 3.24 4.99 -107.50 -0.54 2.70 16 11 O -0.94 -3.20 16.21 -67.04 -1.09 -4.29 16 12 O -0.91 -3.63 16.36 -67.04 -1.10 -4.73 16 13 C -0.66 1.38 4.07 -25.92 -0.11 1.27 16 14 H 0.15 -0.66 6.52 -51.93 -0.34 -1.00 16 15 C -0.08 0.14 7.15 -25.92 -0.19 -0.04 16 16 C -0.09 0.06 3.59 -90.82 -0.33 -0.27 16 17 H 0.12 0.01 6.84 -51.93 -0.36 -0.35 16 18 C -0.07 -0.02 5.29 -104.62 -0.55 -0.57 16 19 C -0.12 0.05 8.63 -39.58 -0.34 -0.29 16 20 C -0.12 0.02 10.05 -39.58 -0.40 -0.38 16 21 C -0.12 -0.02 10.05 -39.59 -0.40 -0.42 16 22 C -0.12 -0.04 10.05 -39.59 -0.40 -0.44 16 23 C -0.11 -0.07 9.71 -39.58 -0.38 -0.45 16 24 C -0.09 0.19 6.95 -25.78 -0.18 0.02 16 25 C -0.13 0.32 8.51 -39.42 -0.34 -0.02 16 26 C -0.07 0.18 9.23 -39.61 -0.37 -0.18 16 27 H 0.38 -1.70 8.43 45.56 0.38 -1.31 16 28 H 0.13 -0.31 7.96 -51.93 -0.41 -0.72 16 29 H -0.25 -0.44 7.11 56.52 0.40 -0.04 16 30 H -0.25 -0.27 7.11 56.52 0.40 0.13 16 31 H 0.16 -0.07 8.06 -52.48 -0.42 -0.49 16 32 H 0.11 -0.30 7.73 -51.93 -0.40 -0.71 16 33 H 0.08 -0.17 8.10 -51.93 -0.42 -0.59 16 34 H 0.12 -0.29 6.64 -52.49 -0.35 -0.64 16 35 H 0.12 -0.22 8.06 -52.48 -0.42 -0.65 16 36 H 0.12 -0.17 8.06 -52.48 -0.42 -0.60 16 37 H 0.12 -0.15 8.06 -52.48 -0.42 -0.57 16 38 H 0.13 -0.07 8.06 -52.48 -0.42 -0.49 16 39 H 0.09 -0.21 8.10 -51.93 -0.42 -0.63 16 40 H 0.11 -0.40 6.30 -51.93 -0.33 -0.73 16 41 H 0.15 -0.80 7.52 -52.48 -0.39 -1.19 16 42 H 0.16 -0.74 7.08 -52.49 -0.37 -1.11 16 LS Contribution 360.08 15.07 5.43 5.43 Total: 0.00 -8.57 360.08 -13.14 -21.71 By element: Atomic # 1 Polarization: -6.96 SS G_CDS: -4.72 Total: -11.68 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -5.20 Total: -2.79 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -3.11 Total: -9.81 kcal Atomic # 9 Polarization: 0.10 SS G_CDS: 0.03 Total: 0.13 kcal Atomic # 14 Polarization: -0.65 SS G_CDS: -5.03 Total: -5.68 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -0.54 Total: 2.70 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -8.57 -13.14 -21.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_11680700_17781816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.243 kcal (2) G-P(sol) polarization free energy of solvation -8.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds