Wall clock time and date at job start Mon Mar 8 2021 09:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86295 * 109.47221 * 2 1 4 4 C 1.50699 * 109.47160 * 120.00020 * 2 1 3 5 5 C 1.38472 * 119.96025 * 195.02259 * 4 2 1 6 6 F 1.35098 * 119.99651 * 359.97438 * 5 4 2 7 7 C 1.38383 * 120.00403 * 179.97438 * 5 4 2 8 8 C 1.38669 * 119.92182 * 0.02562 * 7 5 4 9 9 O 1.35903 * 120.04092 * 180.25374 * 8 7 5 10 10 S 1.52199 * 114.00021 * 271.30752 * 9 8 7 11 11 O 1.42107 * 104.27857 * 41.53441 * 10 9 8 12 12 O 1.42098 * 104.27752 * 169.38921 * 10 9 8 13 13 C 1.81400 * 104.44939 * 285.46343 * 10 9 8 14 14 H 1.08996 * 112.84850 * 53.79886 * 13 10 9 15 15 C 1.53781 * 113.61240 * 184.99826 * 13 10 9 16 16 C 1.53786 * 87.07974 * 89.11771 * 15 13 10 17 17 H 1.09002 * 113.61122 * 270.79634 * 16 15 13 18 18 C 1.50699 * 113.61545 * 139.98329 * 16 15 13 19 19 C 1.38240 * 119.99587 * 299.72179 * 18 16 15 20 20 C 1.38238 * 119.99817 * 179.74361 * 19 18 16 21 21 C 1.38234 * 119.99491 * 0.55653 * 20 19 18 22 22 C 1.38226 * 120.00648 * 359.69642 * 21 20 19 23 23 C 1.38232 * 120.00497 * 119.99498 * 18 16 15 24 24 C 1.53776 * 113.61295 * 282.60650 * 13 10 9 25 25 C 1.38763 * 119.91551 * 359.97438 * 8 7 5 26 26 C 1.38135 * 119.99523 * 0.02562 * 25 8 7 27 27 H 0.96698 * 114.00006 * 299.99961 * 1 2 3 28 28 H 1.09000 * 109.47074 * 240.00110 * 2 1 3 29 29 H 1.48496 * 110.00176 * 299.99908 * 3 2 1 30 30 H 1.48505 * 109.99710 * 61.31859 * 3 2 1 31 31 H 1.08007 * 120.03496 * 179.97438 * 7 5 4 32 32 H 1.09002 * 113.61081 * 203.66026 * 15 13 10 33 33 H 1.08995 * 113.61658 * 334.48397 * 15 13 10 34 34 H 1.07998 * 120.00155 * 0.02562 * 19 18 16 35 35 H 1.08003 * 119.99945 * 180.27090 * 20 19 18 36 36 H 1.08006 * 119.99650 * 179.72746 * 21 20 19 37 37 H 1.08004 * 120.00571 * 180.02562 * 22 21 20 38 38 H 1.08004 * 119.99776 * 0.02562 * 23 18 16 39 39 H 1.09003 * 113.61658 * 25.42944 * 24 13 10 40 40 H 1.08996 * 113.61718 * 156.33865 * 24 13 10 41 41 H 1.08003 * 120.00101 * 179.97438 * 25 8 7 42 42 H 1.07999 * 119.95950 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 3.2543 -0.5740 1.6161 6 9 4.0939 0.1952 0.8890 7 6 3.7164 -1.2255 2.7461 8 6 2.8534 -2.0151 3.4909 9 8 3.3034 -2.6518 4.6040 10 16 3.8819 -4.0337 4.3354 11 8 4.6420 -3.8703 3.1458 12 8 4.5060 -4.3963 5.5594 13 6 2.4321 -5.0791 4.0258 14 1 1.7834 -4.6825 3.2448 15 6 2.7732 -6.5678 3.8463 16 6 2.6146 -6.7069 5.3696 17 1 3.5360 -6.5252 5.9229 18 6 1.9197 -7.9760 5.7909 19 6 0.6302 -8.2325 5.3636 20 6 -0.0053 -9.3991 5.7457 21 6 0.6445 -10.3038 6.5643 22 6 1.9319 -10.0450 6.9958 23 6 2.5695 -8.8810 6.6091 24 6 1.6802 -5.4838 5.3046 25 6 1.5283 -2.1495 3.1014 26 6 1.0707 -1.4976 1.9728 27 1 -0.3933 0.4417 0.7650 28 1 1.7923 -0.5138 -0.8900 29 1 1.5616 2.4678 -1.2085 30 1 1.5879 2.4585 1.2243 31 1 4.7483 -1.1198 3.0471 32 1 2.0262 -7.1213 3.2773 33 1 3.7896 -6.7435 3.4940 34 1 0.1210 -7.5235 4.7277 35 1 -1.0111 -9.6015 5.4083 36 1 0.1463 -11.2133 6.8664 37 1 2.4397 -10.7520 7.6351 38 1 3.5752 -8.6784 6.9468 39 1 1.8153 -4.7851 6.1303 40 1 0.6350 -5.7416 5.1336 41 1 0.8550 -2.7644 3.6803 42 1 0.0394 -1.6029 1.6700 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_11680700_17781816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:05:39 Heat of formation + Delta-G solvation = -82.882722 kcal Electronic energy + Delta-G solvation = -30560.360252 eV Core-core repulsion = 26094.966611 eV Total energy + Delta-G solvation = -4465.393640 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 365.086 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -50.36530 -42.34227 -41.13010 -39.82858 -38.96521 -38.40293 -37.58517 -37.39528 -32.34173 -32.31430 -31.97248 -31.76406 -27.29265 -27.09110 -26.89731 -24.37681 -23.92423 -23.62590 -22.90180 -21.77095 -20.98633 -19.63891 -19.13305 -18.80357 -18.51258 -18.13573 -17.59797 -17.39073 -17.14824 -16.81701 -16.40503 -16.34102 -16.07147 -15.89529 -15.48278 -15.29039 -15.23076 -14.92135 -14.50542 -14.38593 -14.29217 -14.20495 -13.93401 -13.71679 -13.58743 -13.50981 -13.47002 -13.25066 -13.22509 -13.21380 -12.79015 -12.58819 -12.45885 -12.07174 -11.96906 -11.84197 -11.49754 -11.35256 -11.03784 -10.22570 -9.84033 -9.82067 -9.59671 -4.79736 -1.26434 -0.35126 -0.16147 0.40669 0.49874 0.81167 1.18921 1.51207 1.83632 2.11783 2.37578 2.63284 2.76157 2.83517 2.98014 3.13433 3.20849 3.25208 3.48735 3.57913 3.61764 3.71192 3.79877 4.00326 4.03027 4.13226 4.15900 4.29724 4.36855 4.38337 4.48091 4.57037 4.57789 4.60562 4.62672 4.67810 4.73559 4.77498 4.80391 4.88008 4.95291 5.09465 5.14087 5.18576 5.46796 5.57767 5.64607 5.70622 6.11792 6.43161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.065 4.065 3 Si 0.717 3.283 4 C -0.131 4.131 5 C 0.108 3.892 6 F -0.099 7.099 7 C -0.141 4.141 8 C 0.068 3.932 9 O -0.661 6.661 10 S 2.601 3.399 11 O -0.974 6.974 12 O -0.955 6.955 13 C -0.634 4.634 14 H 0.183 0.817 15 C -0.089 4.089 16 C -0.105 4.105 17 H 0.103 0.897 18 C -0.078 4.078 19 C -0.121 4.121 20 C -0.126 4.126 21 C -0.135 4.135 22 C -0.130 4.130 23 C -0.135 4.135 24 C -0.087 4.087 25 C -0.120 4.120 26 C -0.058 4.058 27 H 0.392 0.608 28 H 0.143 0.857 29 H -0.286 1.286 30 H -0.282 1.282 31 H 0.153 0.847 32 H 0.130 0.870 33 H 0.079 0.921 34 H 0.148 0.852 35 H 0.140 0.860 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.124 0.876 39 H 0.087 0.913 40 H 0.135 0.865 41 H 0.187 0.813 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.151 -1.570 -1.376 6.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.343 6.343 2 C -0.175 4.175 3 Si 0.621 3.379 4 C -0.133 4.133 5 C 0.088 3.912 6 F -0.078 7.078 7 C -0.162 4.162 8 C 0.026 3.974 9 O -0.620 6.620 10 S 2.699 3.301 11 O -0.973 6.973 12 O -0.953 6.953 13 C -0.744 4.744 14 H 0.201 0.799 15 C -0.127 4.127 16 C -0.123 4.123 17 H 0.121 0.879 18 C -0.078 4.078 19 C -0.138 4.138 20 C -0.144 4.144 21 C -0.153 4.153 22 C -0.148 4.148 23 C -0.153 4.153 24 C -0.125 4.125 25 C -0.140 4.140 26 C -0.076 4.076 27 H 0.242 0.758 28 H 0.161 0.839 29 H -0.213 1.213 30 H -0.207 1.207 31 H 0.170 0.830 32 H 0.148 0.852 33 H 0.098 0.902 34 H 0.165 0.835 35 H 0.158 0.842 36 H 0.151 0.849 37 H 0.149 0.851 38 H 0.142 0.858 39 H 0.106 0.894 40 H 0.153 0.847 41 H 0.204 0.796 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -5.528 -0.725 -1.628 5.808 hybrid contribution -0.617 -0.294 0.698 0.977 sum -6.144 -1.018 -0.930 6.297 Atomic orbital electron populations 1.86593 1.16777 1.80234 1.50718 1.24816 0.84612 1.10103 0.97981 0.93899 0.92637 0.73322 0.78062 1.20784 0.92419 1.00336 0.99736 1.17033 0.87920 0.94824 0.91405 1.91216 1.69761 1.71149 1.75627 1.21370 1.02276 0.97647 0.94875 1.18010 0.94340 1.00066 0.84976 1.85734 1.82556 1.49671 1.43994 1.05217 0.76900 0.74445 0.73516 1.93631 1.69594 1.83174 1.50879 1.93605 1.73905 1.81791 1.46019 1.32228 1.19434 1.11546 1.11202 0.79944 1.22793 1.04394 0.89283 0.96226 1.22046 1.00058 0.93249 0.96969 0.87864 1.19662 0.94916 0.95367 0.97900 1.21282 0.94159 0.97922 1.00480 1.21475 1.00858 0.94254 0.97820 1.21478 0.95230 1.00351 0.98262 1.21405 0.95698 0.97477 1.00262 1.21339 1.00574 0.94797 0.98542 1.22906 1.00921 0.96279 0.92416 1.21846 0.92615 1.01678 0.97853 1.21113 1.01852 0.92778 0.91861 0.75786 0.83937 1.21289 1.20731 0.82954 0.85163 0.90245 0.83485 0.84206 0.84873 0.85116 0.85793 0.89399 0.84705 0.79595 0.79708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 2.50 11.64 -148.98 -1.73 0.76 16 2 C -0.07 0.29 2.97 71.24 0.21 0.50 16 3 Si 0.72 -0.93 29.58 68.60 2.03 1.10 16 4 C -0.13 0.54 5.13 -19.80 -0.10 0.43 16 5 C 0.11 -0.07 6.66 22.36 0.15 0.08 16 6 F -0.10 0.11 13.72 44.97 0.62 0.73 16 7 C -0.14 -0.25 8.94 22.41 0.20 -0.05 16 8 C 0.07 -0.01 4.82 22.50 0.11 0.10 16 9 O -0.66 -1.49 10.05 -61.55 -0.62 -2.11 16 10 S 2.60 8.63 4.99 -56.49 -0.28 8.35 16 11 O -0.97 -8.10 16.21 -118.57 -1.92 -10.02 16 12 O -0.95 -9.71 16.36 -118.57 -1.94 -11.65 16 13 C -0.63 3.80 4.07 31.12 0.13 3.93 16 14 H 0.18 -2.35 6.52 -2.39 -0.02 -2.36 16 15 C -0.09 0.41 7.15 31.12 0.22 0.64 16 16 C -0.10 0.16 3.59 -10.92 -0.04 0.12 16 17 H 0.10 0.19 6.84 -2.39 -0.02 0.18 16 18 C -0.08 0.00 5.29 -19.87 -0.11 -0.11 16 19 C -0.12 0.33 8.63 22.27 0.19 0.52 16 20 C -0.13 0.21 10.05 22.27 0.22 0.44 16 21 C -0.14 0.00 10.05 22.27 0.22 0.22 16 22 C -0.13 -0.18 10.05 22.27 0.22 0.04 16 23 C -0.13 -0.29 9.71 22.27 0.22 -0.08 16 24 C -0.09 0.56 6.95 31.21 0.22 0.77 16 25 C -0.12 0.89 8.51 22.37 0.19 1.08 16 26 C -0.06 0.48 9.23 22.25 0.21 0.68 16 27 H 0.39 -4.34 8.43 -74.06 -0.62 -4.97 16 28 H 0.14 -0.86 7.96 -2.39 -0.02 -0.88 16 29 H -0.29 -1.50 7.11 99.48 0.71 -0.80 16 30 H -0.28 -0.90 7.11 99.48 0.71 -0.19 16 31 H 0.15 0.29 8.06 -2.91 -0.02 0.26 16 32 H 0.13 -1.11 7.73 -2.39 -0.02 -1.13 16 33 H 0.08 -0.31 8.10 -2.39 -0.02 -0.33 16 34 H 0.15 -1.26 6.64 -2.91 -0.02 -1.28 16 35 H 0.14 -0.81 8.06 -2.91 -0.02 -0.83 16 36 H 0.13 -0.42 8.06 -2.91 -0.02 -0.44 16 37 H 0.13 -0.18 8.06 -2.91 -0.02 -0.20 16 38 H 0.12 0.12 8.06 -2.91 -0.02 0.10 16 39 H 0.09 -0.52 8.10 -2.39 -0.02 -0.54 16 40 H 0.13 -1.56 6.30 -2.39 -0.02 -1.57 16 41 H 0.19 -2.79 7.52 -2.91 -0.02 -2.81 16 42 H 0.19 -2.52 7.08 -2.91 -0.02 -2.54 16 Total: 0.00 -22.96 360.08 -0.90 -23.86 By element: Atomic # 1 Polarization: -20.83 SS G_CDS: 0.49 Total: -20.34 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 2.46 Total: 9.32 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -6.21 Total: -23.02 kcal Atomic # 9 Polarization: 0.11 SS G_CDS: 0.62 Total: 0.73 kcal Atomic # 14 Polarization: -0.93 SS G_CDS: 2.03 Total: 1.10 kcal Atomic # 16 Polarization: 8.63 SS G_CDS: -0.28 Total: 8.35 kcal Total: -22.96 -0.90 -23.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_11680700_17781816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.019 kcal (2) G-P(sol) polarization free energy of solvation -22.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds