Wall clock time and date at job start Mon Mar 8 2021 08:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86301 * 109.47259 * 2 1 4 4 H 1.48494 * 109.46934 * 60.00049 * 3 2 1 5 5 H 1.48496 * 109.46781 * 179.97438 * 3 2 1 6 6 H 1.48495 * 109.46973 * 300.00306 * 3 2 1 7 7 C 1.50697 * 109.46996 * 120.00351 * 2 1 3 8 8 C 1.38208 * 119.95290 * 255.27240 * 7 2 1 9 9 C 1.38178 * 120.07837 * 180.02562 * 8 7 2 10 10 C 1.38728 * 119.99679 * 359.97438 * 9 8 7 11 11 O 1.35897 * 120.04847 * 180.02562 * 10 9 8 12 12 S 1.52199 * 113.99793 * 89.99659 * 11 10 9 13 13 O 1.42105 * 106.40114 * 188.54336 * 12 11 10 14 14 O 1.42098 * 106.40488 * 321.46557 * 12 11 10 15 15 C 1.76210 * 107.21496 * 75.00655 * 12 11 10 16 16 C 1.38234 * 119.99807 * 270.27239 * 15 12 11 17 17 C 1.38229 * 120.00088 * 180.02562 * 16 15 12 18 18 C 1.38237 * 119.99762 * 359.97438 * 17 16 15 19 Xx 1.81001 * 119.99978 * 179.97438 * 18 17 16 20 19 F 9.37545 * 88.99715 * 219.68212 * 7 1 2 21 20 F 1.60999 * 89.99902 * 135.00195 * 19 18 17 22 21 F 1.60999 * 90.00098 * 315.00195 * 19 18 17 23 22 F 1.61001 * 90.00183 * 225.00236 * 19 18 17 24 23 F 1.61001 * 89.99817 * 45.00236 * 19 18 17 25 24 C 1.38241 * 120.00229 * 359.96004 * 18 17 16 26 25 C 1.38231 * 119.99871 * 90.00045 * 15 12 11 27 26 C 1.38710 * 119.91213 * 0.02562 * 10 9 8 28 27 C 1.38339 * 119.92177 * 359.74921 * 27 10 9 29 28 F 1.35099 * 120.00006 * 180.02562 * 28 27 10 30 29 H 0.96696 * 114.00036 * 299.99991 * 1 2 3 31 30 H 1.09001 * 109.47103 * 239.99639 * 2 1 3 32 31 H 1.08000 * 119.96269 * 359.97438 * 8 7 2 33 32 H 1.08003 * 120.00511 * 179.97438 * 9 8 7 34 33 H 1.08000 * 119.99832 * 359.97438 * 16 15 12 35 34 H 1.07993 * 120.00207 * 179.97438 * 17 16 15 36 35 H 1.07993 * 119.99839 * 180.02562 * 25 18 17 37 36 H 1.08001 * 120.00226 * 0.19933 * 26 15 12 38 37 H 1.08005 * 120.03677 * 179.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 1 1.5551 2.4564 1.2125 5 1 3.5351 1.7563 0.0006 6 1 1.5551 2.4565 -1.2124 7 6 1.9313 -0.7105 1.2304 8 6 2.4484 0.0179 2.2851 9 6 2.9101 -0.6309 3.4143 10 6 2.8546 -2.0150 3.4904 11 8 3.3080 -2.6542 4.6007 12 16 2.2467 -2.8632 5.6714 13 8 2.9261 -3.3516 6.8199 14 8 1.4496 -1.6869 5.6815 15 6 1.1997 -4.1689 5.1200 16 6 0.0850 -3.8842 4.3536 17 6 -0.7366 -4.9084 3.9215 18 6 -0.4432 -6.2174 4.2552 19 9 -2.4758 -8.7512 3.1855 20 9 -0.2257 -8.4178 3.2658 21 9 -2.8131 -6.6991 4.1141 22 9 -1.4736 -8.2147 5.1594 23 9 -1.5652 -6.9022 2.2205 24 6 0.6723 -6.5022 5.0204 25 6 1.4962 -5.4784 5.4490 26 6 2.3356 -2.7457 2.4318 27 6 1.8700 -2.0923 1.3049 28 9 1.3638 -2.8024 0.2730 29 1 -0.3933 0.4417 0.7650 30 1 1.7924 -0.5139 -0.8900 31 1 2.4923 1.0954 2.2263 32 1 3.3143 -0.0606 4.2376 33 1 -0.1444 -2.8615 4.0933 34 1 -1.6077 -4.6859 3.3232 35 1 0.9017 -7.5249 5.2808 36 1 2.3678 -5.7009 6.0467 37 1 2.2918 -3.8234 2.4888 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_11680700_8643202.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:28:11 Heat of formation + Delta-G solvation = 261.916214 kcal Electronic energy + Delta-G solvation = -37621.795693 eV Core-core repulsion = 31350.644079 eV Total energy + Delta-G solvation = -6271.151613 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 406.031 amu Computer time = 49.81 seconds Orbital eigenvalues (eV) -50.11235 -44.49425 -44.34815 -44.29998 -44.20691 -43.68849 -42.46851 -41.34067 -39.79728 -38.79132 -37.48792 -37.42655 -33.31736 -33.17449 -32.55267 -31.85344 -27.13848 -24.95997 -24.87325 -24.39264 -23.80382 -21.91715 -20.54177 -19.66971 -19.07340 -18.60309 -18.22349 -17.63061 -17.27376 -17.03706 -16.87532 -16.66967 -16.57033 -16.07883 -15.83857 -15.64877 -15.61993 -15.57383 -15.27466 -15.22300 -14.98484 -14.86155 -14.60224 -14.50296 -14.38990 -14.29475 -14.27309 -14.17908 -14.13910 -14.01582 -13.82220 -13.72235 -13.61892 -13.58389 -13.55412 -13.27332 -13.18988 -12.85796 -12.72578 -12.42094 -12.25895 -12.11063 -12.06923 -11.69588 -11.60879 -11.50646 -11.14438 -10.49963 -10.41037 -10.01761 -5.37366 -4.90560 -3.49819 -1.63951 -1.31607 -0.81584 -0.36257 -0.20569 0.80898 1.12558 1.32843 1.47874 1.58362 1.97617 2.00424 2.15395 2.33617 2.51731 2.63266 2.89865 3.12497 3.18362 3.29809 3.39304 3.52320 3.60337 3.64269 3.76209 3.80274 3.89934 3.94151 4.13335 4.29011 4.40400 4.54119 4.57067 4.60205 4.71843 4.81975 4.89195 5.43316 6.71748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.091 4.091 3 Si 0.980 3.020 4 H -0.225 1.225 5 H -0.248 1.248 6 H -0.280 1.280 7 C -0.131 4.131 8 C -0.077 4.077 9 C -0.091 4.091 10 C 0.075 3.925 11 O -0.641 6.641 12 S 2.700 3.300 13 O -0.927 6.927 14 O -0.937 6.937 15 C -0.699 4.699 16 C 0.054 3.946 17 C -0.127 4.127 18 C 0.386 3.614 19 F -0.203 7.203 20 F -0.161 7.161 21 F -0.160 7.160 22 F -0.160 7.160 23 F -0.160 7.160 24 C -0.126 4.126 25 C 0.065 3.935 26 C -0.162 4.162 27 C 0.134 3.866 28 F -0.129 7.129 29 H 0.394 0.606 30 H 0.119 0.881 31 H 0.173 0.827 32 H 0.175 0.825 33 H 0.221 0.779 34 H 0.201 0.799 35 H 0.204 0.796 36 H 0.228 0.772 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.200 11.769 2.147 14.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.200 4.200 3 Si 0.802 3.198 4 H -0.147 1.147 5 H -0.172 1.172 6 H -0.206 1.206 7 C -0.133 4.133 8 C -0.094 4.094 9 C -0.111 4.111 10 C 0.034 3.966 11 O -0.600 6.600 12 S 2.789 3.211 13 O -0.925 6.925 14 O -0.936 6.936 15 C -0.779 4.779 16 C 0.036 3.964 17 C -0.145 4.145 18 C 0.381 3.619 19 F -0.203 7.203 20 F -0.159 7.159 21 F -0.159 7.159 22 F -0.158 7.158 23 F -0.158 7.158 24 C -0.144 4.144 25 C 0.047 3.953 26 C -0.183 4.183 27 C 0.114 3.886 28 F -0.108 7.108 29 H 0.243 0.757 30 H 0.137 0.863 31 H 0.190 0.810 32 H 0.192 0.808 33 H 0.238 0.762 34 H 0.218 0.782 35 H 0.220 0.780 36 H 0.245 0.755 37 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 9.020 12.647 2.023 15.666 hybrid contribution -1.791 -2.678 -0.547 3.268 sum 7.229 9.969 1.476 12.403 Atomic orbital electron populations 1.86587 1.16700 1.81942 1.50359 1.25172 0.85587 1.11988 0.97302 0.85255 0.80260 0.73057 0.81243 1.14735 1.17168 1.20584 1.20855 1.01038 0.92666 0.98728 1.21237 0.95418 1.02040 0.90731 1.21692 0.97374 0.91797 1.00282 1.17798 1.02835 0.91083 0.84892 1.85791 1.57922 1.77797 1.38465 1.02275 0.72354 0.73324 0.73156 1.93698 1.72579 1.81518 1.44712 1.93691 1.70421 1.44185 1.85267 1.32034 1.15157 1.16871 1.13857 1.21665 0.87139 0.99162 0.88442 1.22176 1.04837 0.84266 1.03214 1.28072 0.76491 0.61195 0.96189 2.00000 1.73300 1.63487 1.83475 1.99920 1.44522 1.78801 1.92661 1.99920 1.72448 1.45342 1.98154 1.99921 1.75092 1.82540 1.58271 1.99920 1.93278 1.51040 1.71569 1.22269 0.89331 1.06112 0.96681 1.21700 0.96489 0.85633 0.91447 1.21411 1.01517 1.03055 0.92315 1.17148 0.97432 0.88961 0.85065 1.91593 1.84448 1.78249 1.56468 0.75653 0.86324 0.81025 0.80771 0.76222 0.78229 0.77960 0.75526 0.80983 Number of geometries 1 Number of calculations of the screened coulomb radii 15 The total number of SCF iterations 896. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 3.35 12.88 -148.98 -1.92 1.44 16 2 C -0.09 0.74 2.45 71.23 0.17 0.91 16 3 Si 0.98 -9.16 25.50 68.60 1.75 -7.41 16 4 H -0.22 2.82 6.72 99.48 0.67 3.49 16 5 H -0.25 2.12 7.11 99.48 0.71 2.83 16 6 H -0.28 0.95 7.11 99.48 0.71 1.65 16 7 C -0.13 1.20 5.26 -19.81 -0.10 1.09 16 8 C -0.08 0.94 8.65 22.25 0.19 1.13 16 9 C -0.09 1.06 9.19 22.37 0.21 1.26 16 10 C 0.08 -0.78 4.80 22.50 0.11 -0.67 16 11 O -0.64 6.75 10.16 -61.67 -0.63 6.13 16 12 S 2.70 -27.15 5.42 -56.49 -0.31 -27.45 16 13 O -0.93 3.88 17.27 -118.78 -2.05 1.83 16 14 O -0.94 7.19 15.61 -118.78 -1.85 5.34 16 15 C -0.70 9.57 5.29 22.27 0.12 9.69 16 16 C 0.05 -0.77 8.40 22.27 0.19 -0.59 16 17 C -0.13 1.18 8.62 22.27 0.19 1.37 16 18 C 0.39 -1.19 4.82 22.27 0.11 -1.08 16 19 F -0.20 -4.85 16.66 44.97 0.75 -4.10 16 20 F -0.16 -2.02 15.31 44.97 0.69 -1.33 16 21 F -0.16 -2.11 15.31 44.97 0.69 -1.42 16 22 F -0.16 -2.08 15.32 44.97 0.69 -1.39 16 23 F -0.16 -2.07 15.31 44.97 0.69 -1.38 16 24 C -0.13 1.24 8.62 22.27 0.19 1.43 16 25 C 0.06 -0.97 9.52 22.27 0.21 -0.76 16 26 C -0.16 1.73 8.34 22.41 0.19 1.92 16 27 C 0.13 -0.99 7.24 22.36 0.16 -0.83 16 28 F -0.13 0.31 16.75 44.97 0.75 1.06 16 29 H 0.39 -5.61 8.70 -74.06 -0.64 -6.25 16 30 H 0.12 -0.86 7.90 -2.39 -0.02 -0.88 16 31 H 0.17 -2.81 4.88 -2.91 -0.01 -2.82 16 32 H 0.17 -2.69 8.06 -2.91 -0.02 -2.71 16 33 H 0.22 -4.43 7.62 -2.91 -0.02 -4.45 16 34 H 0.20 -2.06 7.40 -2.91 -0.02 -2.08 16 35 H 0.20 -2.28 7.40 -2.91 -0.02 -2.31 16 36 H 0.23 -4.77 7.62 -2.91 -0.02 -4.79 16 37 H 0.17 -2.56 7.94 -2.91 -0.02 -2.58 16 Total: 0.00 -37.17 361.15 2.45 -34.72 By element: Atomic # 1 Polarization: -22.17 SS G_CDS: 1.27 Total: -20.90 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: 1.93 Total: 14.88 kcal Atomic # 8 Polarization: 21.18 SS G_CDS: -6.45 Total: 14.73 kcal Atomic # 9 Polarization: -12.82 SS G_CDS: 4.26 Total: -8.56 kcal Atomic # 14 Polarization: -9.16 SS G_CDS: 1.75 Total: -7.41 kcal Atomic # 16 Polarization: -27.15 SS G_CDS: -0.31 Total: -27.45 kcal Total: -37.17 2.45 -34.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_11680700_8643202.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 296.633 kcal (2) G-P(sol) polarization free energy of solvation -37.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 259.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 261.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 49.81 seconds