Wall clock time and date at job start Mon Mar 8 2021 08:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86301 * 109.47259 * 2 1 4 4 H 1.48494 * 109.46934 * 60.00049 * 3 2 1 5 5 H 1.48496 * 109.46781 * 179.97438 * 3 2 1 6 6 H 1.48495 * 109.46973 * 300.00306 * 3 2 1 7 7 C 1.50697 * 109.46996 * 120.00351 * 2 1 3 8 8 C 1.38208 * 119.95290 * 255.27240 * 7 2 1 9 9 C 1.38178 * 120.07837 * 180.02562 * 8 7 2 10 10 C 1.38728 * 119.99679 * 359.97438 * 9 8 7 11 11 O 1.35897 * 120.04847 * 180.02562 * 10 9 8 12 12 S 1.52199 * 113.99793 * 89.99659 * 11 10 9 13 13 O 1.42105 * 106.40114 * 188.54336 * 12 11 10 14 14 O 1.42098 * 106.40488 * 321.46557 * 12 11 10 15 15 C 1.76210 * 107.21496 * 75.00655 * 12 11 10 16 16 C 1.38209 * 119.99763 * 270.27248 * 15 12 11 17 17 C 1.38246 * 119.99990 * 180.02562 * 16 15 12 18 Xx 1.81006 * 120.00429 * 179.97438 * 17 16 15 19 18 F 6.78427 * 43.46386 * 154.26254 * 2 1 3 20 19 F 1.60995 * 89.99942 * 134.99858 * 18 17 16 21 20 F 1.61001 * 89.99633 * 314.99990 * 18 17 16 22 21 F 1.60998 * 90.00006 * 224.99838 * 18 17 16 23 22 F 1.61003 * 89.99708 * 44.99926 * 18 17 16 24 23 C 1.38220 * 119.99863 * 359.95407 * 17 16 15 25 24 C 1.38250 * 120.00056 * 0.02562 * 24 17 16 26 25 C 1.38213 * 119.99971 * 359.77052 * 25 24 17 27 26 C 1.38710 * 119.91213 * 0.02562 * 10 9 8 28 27 C 1.38339 * 119.92177 * 359.74921 * 27 10 9 29 28 F 1.35099 * 120.00006 * 180.02562 * 28 27 10 30 29 H 0.96696 * 114.00036 * 299.99991 * 1 2 3 31 30 H 1.09001 * 109.47103 * 239.99639 * 2 1 3 32 31 H 1.08000 * 119.96269 * 359.97438 * 8 7 2 33 32 H 1.08003 * 120.00511 * 179.97438 * 9 8 7 34 33 H 1.08000 * 119.99876 * 359.97438 * 16 15 12 35 34 H 1.07999 * 119.99860 * 180.02562 * 24 17 16 36 35 H 1.08000 * 119.99787 * 179.97438 * 25 24 17 37 36 H 1.07998 * 119.99767 * 179.97438 * 26 25 24 38 37 H 1.08005 * 120.03677 * 179.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 1 1.5551 2.4564 1.2125 5 1 3.5351 1.7563 0.0006 6 1 1.5551 2.4565 -1.2124 7 6 1.9313 -0.7105 1.2304 8 6 2.4484 0.0179 2.2851 9 6 2.9101 -0.6309 3.4143 10 6 2.8546 -2.0150 3.4904 11 8 3.3080 -2.6542 4.6007 12 16 2.2467 -2.8632 5.6714 13 8 2.9261 -3.3516 6.8199 14 8 1.4496 -1.6869 5.6815 15 6 1.1997 -4.1689 5.1200 16 6 0.0852 -3.8842 4.3538 17 6 -0.7365 -4.9085 3.9216 18 9 -3.4950 -4.2039 2.0266 19 9 -1.8233 -5.7465 1.9254 20 9 -2.5696 -3.3250 3.9121 21 9 -3.0719 -5.5438 3.8185 22 9 -1.3210 -3.5278 2.0189 23 6 -0.4429 -6.2174 4.2549 24 6 0.6721 -6.5022 5.0210 25 6 1.4960 -5.4785 5.4495 26 6 2.3356 -2.7457 2.4318 27 6 1.8700 -2.0923 1.3049 28 9 1.3638 -2.8024 0.2730 29 1 -0.3933 0.4417 0.7650 30 1 1.7924 -0.5139 -0.8900 31 1 2.4923 1.0954 2.2263 32 1 3.3143 -0.0606 4.2376 33 1 -0.1442 -2.8615 4.0934 34 1 -1.0846 -7.0177 3.9169 35 1 0.9013 -7.5249 5.2817 36 1 2.3668 -5.7010 6.0483 37 1 2.2918 -3.8234 2.4888 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_11680700_9043274.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:43:38 Heat of formation + Delta-G solvation = 262.713113 kcal Electronic energy + Delta-G solvation = -39020.424689 eV Core-core repulsion = 32749.307631 eV Total energy + Delta-G solvation = -6271.117057 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 406.031 amu Computer time = 30.89 seconds Orbital eigenvalues (eV) -50.19426 -44.47122 -44.31730 -44.27300 -44.16971 -43.65415 -42.54588 -41.31099 -39.87845 -38.87913 -37.58710 -37.51964 -33.58397 -32.78883 -32.66887 -31.94849 -27.23098 -25.46305 -24.63705 -24.27049 -23.90074 -21.96393 -20.25085 -19.71101 -19.18023 -18.76401 -18.42346 -17.81224 -17.64748 -17.32178 -17.10344 -16.73313 -16.15405 -15.93106 -15.91526 -15.76746 -15.65150 -15.38130 -15.34292 -15.11211 -15.07606 -14.85084 -14.56355 -14.43988 -14.36450 -14.27207 -14.23568 -14.19157 -14.11927 -13.98897 -13.79270 -13.77235 -13.69203 -13.67887 -13.64691 -13.52460 -13.27596 -12.92279 -12.65695 -12.39254 -12.34165 -12.14790 -12.03229 -11.76973 -11.57258 -11.47357 -11.13450 -10.57981 -10.49860 -10.10444 -5.34115 -4.87694 -3.44552 -1.58287 -1.27371 -1.00481 -0.44914 -0.29582 0.75344 1.04800 1.41273 1.42301 1.51546 1.89386 1.92184 2.04350 2.30127 2.47279 2.79096 2.89838 3.02999 3.15320 3.21431 3.28910 3.30594 3.45064 3.52054 3.67178 3.81473 3.88346 3.98584 4.30116 4.30814 4.39882 4.44469 4.50644 4.62452 4.70965 4.78674 4.79374 5.34277 6.57054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.101 4.101 3 Si 0.988 3.012 4 H -0.228 1.228 5 H -0.238 1.238 6 H -0.275 1.275 7 C -0.136 4.136 8 C -0.079 4.079 9 C -0.093 4.093 10 C 0.077 3.923 11 O -0.635 6.635 12 S 2.694 3.306 13 O -0.913 6.913 14 O -0.949 6.949 15 C -0.657 4.657 16 C -0.029 4.029 17 C 0.311 3.689 18 F -0.204 7.204 19 F -0.158 7.158 20 F -0.171 7.171 21 F -0.163 7.163 22 F -0.147 7.147 23 C -0.051 4.051 24 C -0.038 4.038 25 C 0.017 3.983 26 C -0.165 4.165 27 C 0.127 3.873 28 F -0.130 7.130 29 H 0.390 0.610 30 H 0.119 0.881 31 H 0.176 0.824 32 H 0.180 0.820 33 H 0.182 0.818 34 H 0.204 0.796 35 H 0.247 0.753 36 H 0.224 0.776 37 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.850 -3.128 5.892 13.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.209 4.209 3 Si 0.808 3.192 4 H -0.151 1.151 5 H -0.161 1.161 6 H -0.201 1.201 7 C -0.138 4.138 8 C -0.096 4.096 9 C -0.113 4.113 10 C 0.035 3.965 11 O -0.594 6.594 12 S 2.783 3.217 13 O -0.911 6.911 14 O -0.947 6.947 15 C -0.738 4.738 16 C -0.048 4.048 17 C 0.305 3.695 18 F -0.204 7.204 19 F -0.156 7.156 20 F -0.169 7.169 21 F -0.162 7.162 22 F -0.145 7.145 23 C -0.068 4.068 24 C -0.055 4.055 25 C -0.001 4.001 26 C -0.186 4.186 27 C 0.107 3.893 28 F -0.108 7.108 29 H 0.239 0.761 30 H 0.137 0.863 31 H 0.193 0.807 32 H 0.197 0.803 33 H 0.199 0.801 34 H 0.221 0.779 35 H 0.263 0.737 36 H 0.241 0.759 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 12.681 -2.278 5.769 14.116 hybrid contribution -2.427 -0.654 -1.081 2.736 sum 10.254 -2.932 4.688 11.650 Atomic orbital electron populations 1.86598 1.17244 1.82057 1.50010 1.25396 0.85274 1.13003 0.97235 0.85167 0.80647 0.72111 0.81292 1.15105 1.16068 1.20063 1.20944 1.01068 0.92689 0.99145 1.21282 0.95445 1.02149 0.90732 1.21736 0.97464 0.91845 1.00267 1.17746 1.02796 0.91113 0.84850 1.85761 1.57767 1.77694 1.38183 1.02451 0.72401 0.73474 0.73400 1.93710 1.72206 1.81403 1.43771 1.93695 1.70550 1.45077 1.85390 1.31833 1.09534 1.19239 1.13214 1.21318 0.88773 1.02750 0.91943 1.27471 0.59128 0.94064 0.88841 2.00000 1.95173 1.25388 1.99792 1.99919 1.98731 1.20213 1.96776 1.99920 1.93142 1.35805 1.88038 1.99918 1.95209 1.28306 1.92723 1.99921 1.76526 1.39978 1.98111 1.22799 0.97498 0.93062 0.93452 1.22492 0.86570 1.04608 0.91823 1.22330 0.99409 0.88221 0.90106 1.21432 1.01584 1.03209 0.92378 1.17296 0.97277 0.89303 0.85398 1.91587 1.84486 1.78261 1.56480 0.76069 0.86268 0.80691 0.80276 0.80130 0.77901 0.73720 0.75916 0.80796 Number of geometries 1 Number of calculations of the screened coulomb radii 6 The total number of SCF iterations 559. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.72 12.88 -148.98 -1.92 -3.64 16 2 C -0.10 0.12 2.45 71.23 0.17 0.29 16 3 Si 0.99 -4.72 25.50 68.60 1.75 -2.97 16 4 H -0.23 1.72 6.72 99.48 0.67 2.39 16 5 H -0.24 1.35 7.11 99.48 0.71 2.06 16 6 H -0.28 -0.10 7.11 99.48 0.71 0.61 16 7 C -0.14 0.23 5.26 -19.81 -0.10 0.13 16 8 C -0.08 0.47 8.65 22.25 0.19 0.66 16 9 C -0.09 0.57 9.19 22.37 0.21 0.77 16 10 C 0.08 -0.37 4.80 22.50 0.11 -0.27 16 11 O -0.64 4.55 10.16 -61.67 -0.63 3.92 16 12 S 2.69 -16.71 5.42 -56.49 -0.31 -17.02 16 13 O -0.91 2.81 17.27 -118.78 -2.05 0.76 16 14 O -0.95 0.95 15.61 -118.78 -1.85 -0.90 16 15 C -0.66 6.81 5.29 22.27 0.12 6.93 16 16 C -0.03 0.12 6.97 22.26 0.16 0.28 16 17 C 0.31 -0.46 4.82 22.27 0.11 -0.36 16 18 F -0.20 -5.20 16.66 44.97 0.75 -4.45 16 19 F -0.16 -2.11 15.31 44.97 0.69 -1.42 16 20 F -0.17 -2.78 15.31 44.97 0.69 -2.09 16 21 F -0.16 -2.26 15.31 44.97 0.69 -1.57 16 22 F -0.15 -2.22 15.31 44.97 0.69 -1.53 16 23 C -0.05 0.60 8.62 22.27 0.19 0.79 16 24 C -0.04 0.80 10.05 22.27 0.22 1.02 16 25 C 0.02 -0.31 9.52 22.27 0.21 -0.10 16 26 C -0.17 0.66 8.34 22.41 0.19 0.85 16 27 C 0.13 0.09 7.24 22.36 0.16 0.25 16 28 F -0.13 -0.80 16.75 44.97 0.75 -0.05 16 29 H 0.39 -1.50 8.70 -74.06 -0.64 -2.14 16 30 H 0.12 -0.12 7.90 -2.39 -0.02 -0.14 16 31 H 0.18 -1.92 4.88 -2.91 -0.01 -1.94 16 32 H 0.18 -1.99 8.06 -2.91 -0.02 -2.01 16 33 H 0.18 -0.36 6.97 -2.91 -0.02 -0.38 16 34 H 0.20 -2.76 7.40 -2.91 -0.02 -2.79 16 35 H 0.25 -7.63 8.06 -2.91 -0.02 -7.65 16 36 H 0.22 -5.57 7.61 -2.91 -0.02 -5.60 16 37 H 0.17 -1.64 7.94 -2.91 -0.02 -1.67 16 Total: 0.00 -41.43 361.15 2.45 -38.97 By element: Atomic # 1 Polarization: -20.53 SS G_CDS: 1.27 Total: -19.26 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: 1.93 Total: 11.25 kcal Atomic # 8 Polarization: 6.59 SS G_CDS: -6.45 Total: 0.14 kcal Atomic # 9 Polarization: -15.37 SS G_CDS: 4.26 Total: -11.11 kcal Atomic # 14 Polarization: -4.72 SS G_CDS: 1.75 Total: -2.97 kcal Atomic # 16 Polarization: -16.71 SS G_CDS: -0.31 Total: -17.02 kcal Total: -41.43 2.45 -38.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_11680700_9043274.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 301.688 kcal (2) G-P(sol) polarization free energy of solvation -41.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 260.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 262.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 30.89 seconds