Wall clock time and date at job start Mon Mar 8 2021 10:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50701 * 109.47224 * 2 1 4 4 C 1.38707 * 120.02810 * 87.73938 * 3 2 1 5 5 O 1.35906 * 120.05668 * 0.02562 * 4 3 2 6 6 S 1.52196 * 113.99961 * 82.84895 * 5 4 3 7 7 O 1.42100 * 104.27910 * 323.16756 * 6 5 4 8 8 O 1.42095 * 104.27744 * 195.30871 * 6 5 4 9 9 C 1.81404 * 104.44968 * 79.23973 * 6 5 4 10 10 H 1.09002 * 112.84809 * 306.15249 * 9 6 5 11 11 C 1.53772 * 113.69165 * 77.42297 * 9 6 5 12 12 C 1.53775 * 87.08357 * 139.99485 * 11 9 6 13 13 H 1.08994 * 113.69311 * 89.12764 * 12 11 9 14 14 C 1.50706 * 113.61504 * 220.02260 * 12 11 9 15 15 O 1.20825 * 120.00341 * 97.49490 * 14 12 11 16 16 O 1.34232 * 119.99689 * 277.49093 * 14 12 11 17 17 C 1.45196 * 117.00019 * 179.97438 * 16 14 12 18 18 C 1.53775 * 113.61274 * 174.96194 * 9 6 5 19 19 C 1.38756 * 119.88870 * 179.72618 * 4 3 2 20 20 C 1.50701 * 120.02732 * 180.24890 * 19 4 3 21 21 O 1.42900 * 109.47654 * 269.07003 * 20 19 4 22 22 Si 1.86301 * 109.46649 * 149.06931 * 20 19 4 23 23 C 1.38122 * 119.94539 * 0.27931 * 19 4 3 24 24 C 1.38295 * 120.05263 * 359.97438 * 23 19 4 25 25 C 1.38166 * 120.02830 * 267.97535 * 3 2 1 26 26 H 1.09003 * 109.47189 * 304.98127 * 1 2 3 27 27 H 1.08996 * 109.47529 * 64.98843 * 1 2 3 28 28 H 1.09006 * 109.47092 * 184.98550 * 1 2 3 29 29 H 1.09000 * 109.47499 * 240.00039 * 2 1 3 30 30 H 1.08998 * 109.47491 * 120.00349 * 2 1 3 31 31 H 1.09007 * 113.61645 * 254.54155 * 11 9 6 32 32 H 1.09000 * 113.61562 * 25.44333 * 11 9 6 33 33 H 1.09002 * 109.46963 * 60.00089 * 17 16 14 34 34 H 1.08994 * 109.47457 * 180.02562 * 17 16 14 35 35 H 1.09000 * 109.47156 * 300.00544 * 17 16 14 36 36 H 1.09000 * 113.61445 * 334.47697 * 18 9 6 37 37 H 1.08999 * 113.61597 * 105.38890 * 18 9 6 38 38 H 1.09004 * 109.47090 * 29.07649 * 20 19 4 39 39 H 0.96695 * 114.00140 * 180.02562 * 21 20 19 40 40 H 1.48497 * 110.00066 * 60.00420 * 22 20 19 41 41 H 1.48506 * 110.00038 * 181.32367 * 22 20 19 42 42 H 1.07997 * 119.97231 * 179.97438 * 23 19 4 43 43 H 1.08001 * 119.94258 * 180.02562 * 24 23 19 44 44 H 1.08002 * 119.97153 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2190 2.0910 1.2000 5 8 1.9497 1.4673 2.3770 6 16 3.0802 0.5816 2.8810 7 8 3.6259 0.0052 1.7024 8 8 2.4731 -0.2275 3.8790 9 6 4.2610 1.7372 3.6301 10 1 4.5594 2.5365 2.9517 11 6 3.8391 2.2360 5.0221 12 6 5.3157 2.1040 5.4306 13 1 5.9035 3.0030 5.2452 14 6 5.5109 1.5534 6.8198 15 8 5.7448 0.3784 6.9766 16 8 5.4250 2.3683 7.8829 17 6 5.6235 1.7692 9.1905 18 6 5.4454 1.0440 4.3239 19 6 2.6871 3.3973 1.1968 20 6 2.8964 4.1264 2.4989 21 8 1.7021 4.8286 2.8491 22 14 4.2981 5.3395 2.3128 23 6 2.9604 4.0288 -0.0007 24 6 2.7684 3.3602 -1.1960 25 6 2.3026 2.0586 -1.1955 26 1 -0.3634 0.5892 0.8420 27 1 -0.3634 0.4345 -0.9312 28 1 -0.3633 -1.0238 0.0893 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.4752 3.2635 5.0260 32 1 3.1770 1.5495 5.5498 33 1 6.6185 1.3268 9.2402 34 1 5.5274 2.5354 9.9597 35 1 4.8734 0.9953 9.3533 36 1 5.2225 0.0316 4.6608 37 1 6.3784 1.1092 3.7642 38 1 3.1389 3.4085 3.2825 39 1 1.7648 5.3221 3.6783 40 1 3.9799 6.3238 1.2474 41 1 4.5357 6.0424 3.5992 42 1 3.3243 5.0456 -0.0037 43 1 2.9831 3.8556 -2.1313 44 1 2.1541 1.5383 -2.1302 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_11759812_13206342.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:45:57 Heat of formation + Delta-G solvation = -141.063464 kcal Electronic energy + Delta-G solvation = -32231.305392 eV Core-core repulsion = 27824.619239 eV Total energy + Delta-G solvation = -4406.686153 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.110 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.59680 -41.98110 -39.88953 -39.40287 -38.32984 -38.06001 -37.37021 -37.25753 -35.29141 -32.44195 -30.48843 -30.03832 -28.22423 -27.49775 -26.77301 -25.39663 -23.90020 -23.37484 -21.89414 -21.56495 -20.87321 -19.98222 -19.26025 -18.99108 -18.50234 -18.36412 -17.81618 -17.46833 -17.23859 -16.96525 -16.62453 -16.30866 -15.78961 -15.43898 -15.24663 -14.96224 -14.79526 -14.57610 -14.45925 -14.34819 -14.13798 -13.98453 -13.88452 -13.77865 -13.58675 -13.48041 -13.30991 -13.29019 -13.14296 -13.09960 -12.82917 -12.77081 -12.43176 -12.13057 -12.05092 -11.93459 -11.84233 -11.77221 -11.64471 -11.29838 -10.75718 -10.05907 -9.88301 -5.27689 -1.16164 -0.10534 0.03648 0.90004 0.93015 1.07073 1.30416 1.58968 1.66933 2.25569 2.35619 2.49318 2.70476 2.93511 2.99491 3.07392 3.32699 3.40796 3.50143 3.65899 3.73163 3.76900 3.90807 3.95350 4.05953 4.08238 4.12261 4.15228 4.18185 4.21247 4.28564 4.32810 4.40776 4.46145 4.52097 4.56462 4.71097 4.72785 4.86229 4.91934 5.01964 5.08384 5.17752 5.29839 5.30045 5.34765 5.64975 6.20432 6.62981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.097 4.097 3 C -0.043 4.043 4 C 0.082 3.918 5 O -0.651 6.651 6 S 2.591 3.409 7 O -0.936 6.936 8 O -0.915 6.915 9 C -0.663 4.663 10 H 0.165 0.835 11 C -0.097 4.097 12 C -0.096 4.096 13 H 0.141 0.859 14 C 0.467 3.533 15 O -0.496 6.496 16 O -0.356 6.356 17 C 0.033 3.967 18 C -0.084 4.084 19 C -0.072 4.072 20 C -0.098 4.098 21 O -0.521 6.521 22 Si 0.672 3.328 23 C -0.109 4.109 24 C -0.089 4.089 25 C -0.097 4.097 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.066 0.934 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.077 0.923 39 H 0.382 0.618 40 H -0.241 1.241 41 H -0.246 1.246 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.573 4.883 -1.499 6.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.134 4.134 3 C -0.045 4.045 4 C 0.040 3.960 5 O -0.610 6.610 6 S 2.686 3.314 7 O -0.935 6.935 8 O -0.914 6.914 9 C -0.769 4.769 10 H 0.182 0.818 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.158 0.842 14 C 0.309 3.691 15 O -0.383 6.383 16 O -0.273 6.273 17 C -0.061 4.061 18 C -0.122 4.122 19 C -0.075 4.075 20 C -0.206 4.206 21 O -0.328 6.328 22 Si 0.571 3.429 23 C -0.127 4.127 24 C -0.108 4.108 25 C -0.115 4.115 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.121 0.879 32 H 0.132 0.868 33 H 0.084 0.916 34 H 0.122 0.878 35 H 0.084 0.916 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.095 0.905 39 H 0.230 0.770 40 H -0.165 1.165 41 H -0.170 1.170 42 H 0.159 0.841 43 H 0.159 0.841 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.202 4.495 -1.984 5.865 hybrid contribution -0.542 0.774 1.332 1.633 sum 2.661 5.269 -0.652 5.938 Atomic orbital electron populations 1.21841 0.93889 1.02725 1.02675 1.20818 0.96368 0.91283 1.04938 1.20129 0.95933 0.97085 0.91356 1.17619 1.05523 0.92096 0.80720 1.85704 1.61746 1.70422 1.43115 1.05783 0.74834 0.75465 0.75312 1.93678 1.79984 1.75273 1.44537 1.93680 1.72879 1.63270 1.61523 1.32463 1.16683 1.18297 1.09410 0.81780 1.22785 0.95829 1.04550 0.90356 1.22445 0.99347 1.01939 0.87810 0.84168 1.23425 0.73173 0.85100 0.87430 1.90716 1.43429 1.17558 1.86597 1.86499 1.82137 1.42369 1.16251 1.23362 1.02473 0.99984 0.80253 1.22635 0.96999 0.98689 0.93882 1.19299 1.00850 0.92197 0.95109 1.25481 0.97112 1.01661 0.96363 1.86659 1.33257 1.67384 1.45490 0.95292 0.83109 0.82031 0.82506 1.21103 1.00102 1.00459 0.91002 1.21373 0.96598 0.94367 0.98432 1.21122 0.98195 0.94849 0.97304 0.92110 0.92025 0.91532 0.89235 0.90418 0.87885 0.86793 0.91571 0.87751 0.91552 0.87106 0.87115 0.90505 0.76993 1.16512 1.16993 0.84088 0.84131 0.83951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.20 9.89 37.15 0.37 0.17 16 2 C -0.10 -0.20 5.32 -27.89 -0.15 -0.35 16 3 C -0.04 -0.08 4.41 -104.47 -0.46 -0.54 16 4 C 0.08 0.19 4.86 -39.22 -0.19 0.00 16 5 O -0.65 -1.92 8.75 -51.77 -0.45 -2.37 16 6 S 2.59 6.43 4.54 -107.50 -0.49 5.94 16 7 O -0.94 -3.41 13.62 -67.04 -0.91 -4.32 16 8 O -0.92 -5.15 17.42 -67.04 -1.17 -6.32 16 9 C -0.66 1.09 2.81 -25.93 -0.07 1.02 16 10 H 0.16 -0.72 4.88 -51.93 -0.25 -0.98 16 11 C -0.10 0.20 6.52 -25.93 -0.17 0.03 16 12 C -0.10 0.21 4.26 -90.96 -0.39 -0.18 16 13 H 0.14 -0.74 8.14 -51.93 -0.42 -1.16 16 14 C 0.47 0.52 7.48 36.01 0.27 0.79 16 15 O -0.50 -2.09 15.65 -18.75 -0.29 -2.39 16 16 O -0.36 -0.20 10.57 -39.26 -0.41 -0.62 16 17 C 0.03 -0.03 10.56 101.05 1.07 1.03 16 18 C -0.08 0.15 6.99 -25.92 -0.18 -0.03 16 19 C -0.07 -0.05 4.72 -104.47 -0.49 -0.54 16 20 C -0.10 0.10 1.99 36.01 0.07 0.17 16 21 O -0.52 -0.07 12.86 -35.23 -0.45 -0.52 16 22 Si 0.67 -1.88 29.68 -169.99 -5.04 -6.92 16 23 C -0.11 0.07 8.65 -39.60 -0.34 -0.27 16 24 C -0.09 0.13 10.04 -39.56 -0.40 -0.27 16 25 C -0.10 0.04 9.69 -39.61 -0.38 -0.34 16 26 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 27 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 28 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 29 H 0.09 0.03 8.07 -51.93 -0.42 -0.39 16 30 H 0.08 0.27 4.98 -51.93 -0.26 0.01 16 31 H 0.10 -0.47 6.92 -51.93 -0.36 -0.83 16 32 H 0.11 -0.11 7.49 -51.93 -0.39 -0.50 16 33 H 0.07 -0.07 8.13 -51.93 -0.42 -0.49 16 34 H 0.10 -0.35 8.14 -51.93 -0.42 -0.78 16 35 H 0.07 -0.05 8.13 -51.93 -0.42 -0.47 16 36 H 0.11 -0.03 7.39 -51.93 -0.38 -0.42 16 37 H 0.11 -0.48 8.14 -51.93 -0.42 -0.90 16 38 H 0.08 -0.18 1.77 -51.93 -0.09 -0.27 16 39 H 0.38 -1.57 8.74 45.56 0.40 -1.17 16 40 H -0.24 0.13 6.40 56.52 0.36 0.49 16 41 H -0.25 0.40 7.11 56.52 0.40 0.80 16 42 H 0.14 -0.29 5.41 -52.49 -0.28 -0.57 16 43 H 0.14 -0.58 8.06 -52.49 -0.42 -1.01 16 44 H 0.14 -0.40 8.06 -52.49 -0.42 -0.82 16 LS Contribution 361.67 15.07 5.45 5.45 Total: 0.00 -11.20 361.67 -10.73 -21.93 By element: Atomic # 1 Polarization: -5.05 SS G_CDS: -5.50 Total: -10.55 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -1.45 Total: 0.69 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -3.70 Total: -16.54 kcal Atomic # 14 Polarization: -1.88 SS G_CDS: -5.04 Total: -6.92 kcal Atomic # 16 Polarization: 6.43 SS G_CDS: -0.49 Total: 5.94 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -11.20 -10.73 -21.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_11759812_13206342.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.131 kcal (2) G-P(sol) polarization free energy of solvation -11.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds