Wall clock time and date at job start Mon Mar 8 2021 11:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86302 * 109.47347 * 2 1 4 4 C 1.50701 * 109.47409 * 119.99972 * 2 1 3 5 5 C 1.38238 * 119.99700 * 64.99730 * 4 2 1 6 6 C 1.38233 * 119.99989 * 180.02562 * 5 4 2 7 7 C 1.38236 * 119.99969 * 359.95565 * 6 5 4 8 8 S 1.76204 * 119.99902 * 180.02562 * 7 6 5 9 9 O 1.42091 * 106.40263 * 336.45877 * 8 7 6 10 10 O 1.42104 * 106.40084 * 203.53918 * 8 7 6 11 11 N 1.65599 * 107.21824 * 90.00073 * 8 7 6 12 12 C 1.46504 * 119.99902 * 64.99691 * 11 8 7 13 13 H 1.09005 * 112.90977 * 346.25622 * 12 11 8 14 14 C 1.53779 * 113.61174 * 117.50489 * 12 11 8 15 15 C 1.53774 * 87.08183 * 139.98093 * 14 12 11 16 16 H 1.09002 * 113.69502 * 220.00567 * 15 14 12 17 17 O 1.42898 * 113.61862 * 89.11453 * 15 14 12 18 18 C 1.35902 * 117.00451 * 104.62649 * 17 15 14 19 19 C 1.38728 * 120.06030 * 173.78131 * 18 17 15 20 20 C 1.38140 * 119.94358 * 179.74787 * 19 18 17 21 21 C 1.38269 * 120.05705 * 0.50691 * 20 19 18 22 22 C 1.38261 * 120.10943 * 359.76313 * 21 20 19 23 23 C 1.38145 * 120.05548 * 359.97438 * 22 21 20 24 24 C 1.53775 * 113.61552 * 215.00059 * 12 11 8 25 25 C 1.38238 * 119.99878 * 0.27778 * 7 6 5 26 26 C 1.38229 * 119.99996 * 359.50899 * 25 7 6 27 27 H 0.96699 * 113.99672 * 59.99701 * 1 2 3 28 28 H 1.09000 * 109.47033 * 240.00082 * 2 1 3 29 29 H 1.48495 * 110.00013 * 60.00122 * 3 2 1 30 30 H 1.48503 * 109.99831 * 181.32156 * 3 2 1 31 31 H 1.08000 * 120.00419 * 359.97438 * 5 4 2 32 32 H 1.08005 * 120.00418 * 179.97438 * 6 5 4 33 33 H 0.96994 * 120.00383 * 244.99916 * 11 8 7 34 34 H 1.08996 * 113.61725 * 25.42815 * 14 12 11 35 35 H 1.09008 * 113.69036 * 254.54018 * 14 12 11 36 36 H 1.08003 * 120.02902 * 359.97438 * 19 18 17 37 37 H 1.08007 * 119.97279 * 180.27221 * 20 19 18 38 38 H 1.08004 * 119.94381 * 179.74849 * 21 20 19 39 39 H 1.08006 * 119.96906 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.02460 * 180.02562 * 23 22 21 41 41 H 1.08995 * 113.61680 * 105.46945 * 24 12 11 42 42 H 1.09005 * 113.61460 * 334.57109 * 24 12 11 43 43 H 1.08002 * 119.99814 * 179.72665 * 25 7 6 44 44 H 1.07999 * 120.00061 * 180.25083 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.6847 -2.0602 1.3983 6 6 2.1451 -2.7118 2.5272 7 6 2.8529 -2.0138 3.4878 8 16 3.4403 -2.8445 4.9264 9 8 2.6106 -3.9852 5.0980 10 8 3.6073 -1.8476 5.9253 11 7 4.9550 -3.4160 4.5783 12 6 6.0484 -2.4781 4.3117 13 1 5.7009 -1.4599 4.1364 14 6 7.1999 -2.5698 5.3268 15 6 8.1581 -2.3906 4.1375 16 1 9.0484 -3.0170 4.1940 17 8 8.4587 -1.0245 3.8451 18 6 9.6832 -0.5685 4.2185 19 6 10.0914 0.7059 3.8528 20 6 11.3346 1.1689 4.2381 21 6 12.1760 0.3594 4.9787 22 6 11.7738 -0.9132 5.3397 23 6 10.5294 -1.3788 4.9615 24 6 7.0457 -2.9793 3.2538 25 6 3.0954 -0.6629 3.3222 26 6 2.6388 -0.0123 2.1912 27 1 -0.3933 0.4417 -0.7650 28 1 1.7923 -0.5138 -0.8900 29 1 1.5616 2.4679 1.2085 30 1 3.5347 1.7702 -0.0322 31 1 1.1317 -2.6056 0.6479 32 1 1.9521 -3.7663 2.6587 33 1 5.1184 -4.3717 4.5509 34 1 7.2802 -3.5438 5.8093 35 1 7.2252 -1.7426 6.0363 36 1 9.4363 1.3369 3.2705 37 1 11.6510 2.1627 3.9574 38 1 13.1492 0.7218 5.2755 39 1 12.4331 -1.5437 5.9179 40 1 10.2156 -2.3729 5.2441 41 1 6.9454 -2.4822 2.2890 42 1 7.0838 -4.0654 3.1695 43 1 3.6446 -0.1166 4.0748 44 1 2.8318 1.0421 2.0599 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_11987234_13421422.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:49:19 Heat of formation + Delta-G solvation = -44.142529 kcal Electronic energy + Delta-G solvation = -29709.003784 eV Core-core repulsion = 25493.780490 eV Total energy + Delta-G solvation = -4215.223294 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.107 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -41.65770 -40.71409 -39.82174 -38.25562 -37.78192 -37.58579 -36.87058 -33.91212 -33.22720 -32.30453 -31.94650 -30.64789 -27.30109 -26.99869 -25.98352 -24.22072 -23.52747 -23.34757 -22.88198 -21.11484 -20.60174 -19.48223 -19.19106 -18.61112 -18.43399 -17.65550 -17.15555 -17.14372 -16.87426 -16.73794 -16.18783 -16.01415 -15.84539 -15.58722 -15.35571 -15.26177 -14.77817 -14.44140 -14.38585 -14.26128 -14.08272 -14.05473 -13.92785 -13.69068 -13.62618 -13.11386 -13.04991 -12.87235 -12.82014 -12.79596 -12.51602 -12.42365 -12.13367 -12.09285 -11.87692 -11.58340 -11.40047 -10.68235 -10.62558 -10.34961 -10.21957 -9.97272 -9.18536 -5.11500 -0.74979 -0.40577 0.10504 0.36934 0.47180 1.09707 1.50354 1.82085 1.82542 1.98708 2.25452 2.68526 2.81461 3.13215 3.19756 3.21497 3.26903 3.53414 3.58201 3.62180 3.68003 3.72534 3.78004 3.89523 3.95880 4.04143 4.12247 4.16597 4.26219 4.29610 4.42638 4.43808 4.48746 4.50045 4.60306 4.64713 4.71653 4.73540 4.83186 4.85231 4.89815 5.02520 5.09229 5.16624 5.32664 5.45325 5.59078 5.60051 5.77206 5.80230 6.40995 6.43154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.082 4.082 3 Si 0.685 3.315 4 C -0.018 4.018 5 C -0.111 4.111 6 C -0.015 4.015 7 C -0.675 4.675 8 S 2.693 3.307 9 O -0.954 6.954 10 O -0.949 6.949 11 N -1.103 6.103 12 C 0.134 3.866 13 H 0.118 0.882 14 C -0.168 4.168 15 C 0.055 3.945 16 H 0.097 0.903 17 O -0.295 6.295 18 C 0.128 3.872 19 C -0.152 4.152 20 C -0.081 4.081 21 C -0.157 4.157 22 C -0.080 4.080 23 C -0.208 4.208 24 C -0.138 4.138 25 C -0.015 4.015 26 C -0.144 4.144 27 H 0.386 0.614 28 H 0.081 0.919 29 H -0.247 1.247 30 H -0.251 1.251 31 H 0.139 0.861 32 H 0.146 0.854 33 H 0.421 0.579 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.130 0.870 41 H 0.088 0.912 42 H 0.109 0.891 43 H 0.145 0.855 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.315 0.302 -6.348 7.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.193 4.193 3 Si 0.586 3.414 4 C -0.018 4.018 5 C -0.129 4.129 6 C -0.034 4.034 7 C -0.762 4.762 8 S 2.782 3.218 9 O -0.944 6.944 10 O -0.939 6.939 11 N -0.862 5.862 12 C 0.026 3.974 13 H 0.135 0.865 14 C -0.208 4.208 15 C -0.002 4.002 16 H 0.114 0.886 17 O -0.209 6.209 18 C 0.083 3.917 19 C -0.171 4.171 20 C -0.099 4.099 21 C -0.175 4.175 22 C -0.098 4.098 23 C -0.226 4.226 24 C -0.178 4.178 25 C -0.034 4.034 26 C -0.162 4.162 27 H 0.234 0.766 28 H 0.099 0.901 29 H -0.172 1.172 30 H -0.176 1.176 31 H 0.157 0.843 32 H 0.164 0.836 33 H 0.257 0.743 34 H 0.123 0.877 35 H 0.107 0.893 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.148 0.852 41 H 0.107 0.893 42 H 0.127 0.873 43 H 0.162 0.838 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.218 0.787 -4.672 5.727 hybrid contribution 0.194 -0.821 -0.524 0.993 sum 3.411 -0.034 -5.195 6.215 Atomic orbital electron populations 1.86492 1.16580 1.81916 1.49940 1.24815 0.86292 1.10921 0.97225 0.95125 0.80950 0.77750 0.87585 1.19728 0.93998 0.94263 0.93815 1.21181 0.99539 0.93889 0.98338 1.21004 0.91105 1.00156 0.91122 1.31006 1.16258 1.06208 1.22704 1.02018 0.72354 0.73660 0.73777 1.93618 1.65658 1.49848 1.85265 1.93626 1.85381 1.60817 1.54078 1.55571 1.25433 1.16709 1.88464 1.22313 0.85633 0.93159 0.96272 0.86464 1.24030 0.94734 1.04499 0.97522 1.23198 0.97840 0.81939 0.97264 0.88560 1.86058 1.30829 1.27154 1.76828 1.19006 0.84333 0.93771 0.94576 1.20481 0.97712 0.94401 1.04500 1.21028 0.92848 0.99672 0.96311 1.21140 1.00553 0.94774 1.01076 1.21005 0.95224 0.95809 0.97797 1.21289 0.96271 1.00990 1.04077 1.23620 0.93102 1.02005 0.99033 1.20863 0.94303 0.92198 0.96048 1.21039 1.00856 0.99536 0.94749 0.76562 0.90086 1.17200 1.17594 0.84312 0.83644 0.74336 0.87698 0.89322 0.85206 0.85213 0.85742 0.85659 0.85249 0.89298 0.87260 0.83759 0.85381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.24 12.81 -35.23 -0.45 -0.21 16 2 C -0.08 0.07 2.79 36.01 0.10 0.17 16 3 Si 0.69 -1.15 29.85 -169.99 -5.07 -6.23 16 4 C -0.02 -0.03 5.38 -104.62 -0.56 -0.59 16 5 C -0.11 -0.14 9.69 -39.58 -0.38 -0.53 16 6 C -0.01 -0.02 9.52 -39.58 -0.38 -0.40 16 7 C -0.68 -1.21 5.95 -39.58 -0.24 -1.45 16 8 S 2.69 5.10 5.68 -107.50 -0.61 4.49 16 9 O -0.95 -4.27 17.28 -57.17 -0.99 -5.26 16 10 O -0.95 -4.64 17.04 -57.17 -0.97 -5.62 16 11 N -1.10 1.65 5.79 -4.20 -0.02 1.63 16 12 C 0.13 -0.18 4.28 -67.12 -0.29 -0.47 16 13 H 0.12 -0.13 7.80 -51.93 -0.41 -0.53 16 14 C -0.17 0.24 7.71 -25.92 -0.20 0.04 16 15 C 0.06 -0.08 3.70 -25.92 -0.10 -0.17 16 16 H 0.10 -0.25 6.04 -51.93 -0.31 -0.56 16 17 O -0.30 -0.37 10.06 -19.43 -0.20 -0.56 16 18 C 0.13 0.22 6.68 -39.22 -0.26 -0.04 16 19 C -0.15 -0.22 9.99 -39.44 -0.39 -0.61 16 20 C -0.08 -0.05 10.04 -39.61 -0.40 -0.44 16 21 C -0.16 -0.07 10.04 -39.56 -0.40 -0.47 16 22 C -0.08 -0.03 10.04 -39.61 -0.40 -0.43 16 23 C -0.21 -0.15 9.01 -39.43 -0.36 -0.50 16 24 C -0.14 0.37 7.70 -25.92 -0.20 0.17 16 25 C -0.01 -0.03 9.28 -39.58 -0.37 -0.40 16 26 C -0.14 -0.30 8.67 -39.59 -0.34 -0.64 16 27 H 0.39 -2.14 8.74 45.56 0.40 -1.75 16 28 H 0.08 -0.23 7.96 -51.93 -0.41 -0.64 16 29 H -0.25 -0.39 7.05 56.52 0.40 0.00 16 30 H -0.25 -0.14 7.11 56.52 0.40 0.26 16 31 H 0.14 -0.06 8.06 -52.49 -0.42 -0.48 16 32 H 0.15 -0.05 7.62 -52.48 -0.40 -0.45 16 33 H 0.42 -1.59 8.94 -34.47 -0.31 -1.89 16 34 H 0.10 -0.31 8.14 -51.93 -0.42 -0.73 16 35 H 0.09 -0.01 8.14 -51.92 -0.42 -0.43 16 36 H 0.13 0.05 8.06 -52.48 -0.42 -0.37 16 37 H 0.13 -0.19 8.06 -52.48 -0.42 -0.61 16 38 H 0.12 -0.16 8.06 -52.48 -0.42 -0.58 16 39 H 0.13 -0.19 8.06 -52.48 -0.42 -0.61 16 40 H 0.13 -0.15 5.95 -52.49 -0.31 -0.46 16 41 H 0.09 -0.20 8.14 -51.93 -0.42 -0.62 16 42 H 0.11 -0.50 8.14 -51.93 -0.42 -0.92 16 43 H 0.14 0.07 7.61 -52.49 -0.40 -0.33 16 44 H 0.13 0.16 4.87 -52.49 -0.26 -0.10 16 LS Contribution 381.53 15.07 5.75 5.75 Total: 0.00 -11.45 381.53 -13.14 -24.59 By element: Atomic # 1 Polarization: -6.40 SS G_CDS: -5.42 Total: -11.81 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -5.16 Total: -6.77 kcal Atomic # 7 Polarization: 1.65 SS G_CDS: -0.02 Total: 1.63 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -2.61 Total: -11.65 kcal Atomic # 14 Polarization: -1.15 SS G_CDS: -5.07 Total: -6.23 kcal Atomic # 16 Polarization: 5.10 SS G_CDS: -0.61 Total: 4.49 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -11.45 -13.14 -24.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_11987234_13421422.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.551 kcal (2) G-P(sol) polarization free energy of solvation -11.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds