Wall clock time and date at job start Mon Mar 8 2021 09:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86301 * 109.46967 * 2 1 4 4 C 1.86306 * 109.47229 * 239.99992 * 2 1 3 5 5 C 1.86801 * 109.47164 * 119.99985 * 2 1 3 6 6 C 1.38232 * 120.00138 * 90.00330 * 5 2 1 7 7 C 1.38235 * 120.00360 * 180.02562 * 6 5 2 8 8 C 1.38238 * 119.99663 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.00107 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47242 * 89.99344 * 9 8 7 11 11 N 1.46506 * 109.47289 * 180.02562 * 10 9 8 12 12 S 1.65593 * 120.00245 * 165.00019 * 11 10 9 13 13 O 1.42095 * 106.40441 * 178.54314 * 12 11 10 14 14 O 1.42107 * 106.40414 * 311.46258 * 12 11 10 15 15 C 1.76199 * 107.21807 * 65.00204 * 12 11 10 16 16 C 1.38237 * 119.99830 * 269.72698 * 15 12 11 17 17 C 1.38237 * 119.99949 * 179.76588 * 16 15 12 18 18 C 1.38239 * 120.00031 * 0.50821 * 17 16 15 19 19 C 1.50697 * 120.00115 * 179.72660 * 18 17 16 20 20 O 1.42898 * 109.47089 * 245.01908 * 19 18 17 21 21 Si 1.86303 * 109.47247 * 5.01955 * 19 18 17 22 22 H 1.48496 * 109.46949 * 60.00086 * 21 19 18 23 23 H 1.48495 * 109.47043 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46797 * 299.99987 * 21 19 18 25 25 C 1.38238 * 119.99553 * 359.74619 * 18 17 16 26 26 C 1.38227 * 120.00132 * 359.97438 * 25 18 17 27 27 C 1.38239 * 119.99816 * 0.24453 * 8 7 6 28 28 C 1.38230 * 120.00001 * 359.50494 * 27 8 7 29 29 H 1.09003 * 109.47397 * 299.99923 * 1 2 3 30 30 H 1.09003 * 109.47158 * 59.99934 * 1 2 3 31 31 H 1.09002 * 109.47245 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47102 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47236 * 300.00018 * 3 2 1 34 34 H 1.08995 * 109.47153 * 60.00117 * 3 2 1 35 35 H 1.08993 * 109.46859 * 299.99949 * 4 2 1 36 36 H 1.09003 * 109.46990 * 59.99971 * 4 2 1 37 37 H 1.09002 * 109.47019 * 179.97438 * 4 2 1 38 38 H 1.08004 * 120.00147 * 359.97438 * 6 5 2 39 39 H 1.07990 * 120.00222 * 179.97438 * 7 6 5 40 40 H 1.09001 * 109.46948 * 329.99733 * 9 8 7 41 41 H 1.08996 * 109.47390 * 209.99374 * 9 8 7 42 42 H 1.09001 * 109.47289 * 60.00043 * 10 9 8 43 43 H 1.09004 * 109.47261 * 300.00299 * 10 9 8 44 44 H 0.97000 * 119.99344 * 345.00347 * 11 10 9 45 45 H 1.08003 * 120.00197 * 359.97438 * 16 15 12 46 46 H 1.08004 * 120.00342 * 180.23209 * 17 16 15 47 47 H 1.08996 * 109.46989 * 125.01922 * 19 18 17 48 48 H 0.96697 * 114.00081 * 180.02562 * 20 19 18 49 49 H 1.07996 * 119.99551 * 179.97438 * 25 18 17 50 50 H 1.08000 * 119.99915 * 179.97438 * 26 25 18 51 51 H 1.07997 * 119.99574 * 179.72608 * 27 8 7 52 52 H 1.08002 * 120.00107 * 180.22764 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4856 -0.8806 1.5252 6 6 2.7161 -2.2431 1.4910 7 6 3.1764 -2.8949 2.6198 8 6 3.4057 -2.1841 3.7831 9 6 3.9069 -2.8946 5.0139 10 6 5.4369 -2.8947 5.0152 11 7 5.9242 -3.5860 6.2115 12 16 7.5061 -4.0671 6.3032 13 8 7.6696 -4.6671 7.5808 14 8 7.7917 -4.7416 5.0855 15 6 8.4952 -2.6089 6.3080 16 6 8.9464 -2.0758 5.1150 17 6 9.7183 -0.9291 5.1184 18 6 10.0479 -0.3213 6.3155 19 6 10.8946 0.9253 6.3196 20 8 12.1428 0.6512 6.9591 21 14 11.2025 1.4727 4.5657 22 1 9.9055 1.7575 3.9012 23 1 12.0374 2.7007 4.5698 24 1 11.9107 0.3958 3.8282 25 6 9.6011 -0.8575 7.5088 26 6 8.8244 -2.0009 7.5050 27 6 3.1699 -0.8225 3.8189 28 6 2.7146 -0.1699 2.6886 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.5739 1.7565 0.0005 33 1 2.1206 2.2703 -0.8900 34 1 2.1206 2.2703 0.8899 35 1 2.1207 -1.9058 -1.5211 36 1 2.1207 -0.3644 -2.4112 37 1 3.5740 -0.8778 -1.5214 38 1 2.5358 -2.7987 0.5825 39 1 3.3560 -3.9594 2.5932 40 1 3.5436 -3.9223 5.0134 41 1 3.5429 -2.3809 5.9036 42 1 5.8003 -1.8671 5.0156 43 1 5.8010 -3.4085 4.1254 44 1 5.3201 -3.7620 6.9497 45 1 8.6929 -2.5533 4.1800 46 1 10.0677 -0.5104 4.1862 47 1 10.3749 1.7157 6.8610 48 1 12.7398 1.4108 6.9983 49 1 9.8590 -0.3829 8.4440 50 1 8.4757 -2.4199 8.4373 51 1 3.3449 -0.2680 4.7290 52 1 2.5338 0.8945 2.7155 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_12221186_13421422.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:06:10 Heat of formation + Delta-G solvation = -102.803371 kcal Electronic energy + Delta-G solvation = -31373.556491 eV Core-core repulsion = 27166.953463 eV Total energy + Delta-G solvation = -4206.603027 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 393.139 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -40.65208 -40.10399 -38.46811 -37.70236 -37.07701 -36.96283 -33.27504 -33.16365 -32.24769 -31.75875 -29.53506 -28.65534 -28.28629 -28.26771 -27.23588 -24.43173 -24.08364 -23.36646 -22.85471 -21.77895 -20.65054 -19.28236 -18.58209 -18.53339 -17.53846 -17.25879 -17.01166 -16.82660 -16.38940 -15.99933 -15.89867 -15.72484 -15.44693 -15.10767 -14.69316 -14.59281 -14.32978 -14.22687 -14.15808 -14.06048 -14.02560 -13.99303 -13.72831 -13.69481 -13.41601 -13.34486 -13.26417 -13.18026 -13.11292 -12.96586 -12.85395 -12.72230 -12.57899 -12.42993 -12.39618 -12.18325 -11.86439 -11.85482 -11.72587 -10.87784 -10.74865 -10.69446 -10.60362 -10.56865 -10.27174 -10.17600 -9.70546 -9.46507 -0.78303 -0.40935 0.14719 0.39582 0.61905 1.07530 1.40756 1.45557 1.85721 1.86009 1.89902 2.04187 2.12294 2.28788 2.66009 2.69438 2.99434 3.18514 3.28688 3.65100 3.73217 3.83803 3.87834 3.94979 4.00425 4.13569 4.24938 4.26454 4.27301 4.37578 4.52755 4.57208 4.60929 4.67946 4.69915 4.79906 4.83947 4.84474 4.87417 4.88676 4.89824 4.89988 4.91083 4.95015 4.98449 5.07953 5.21779 5.22592 5.28824 5.54265 5.60452 5.64735 5.66382 5.67414 5.74357 5.76893 6.01021 6.25556 6.73326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.121 2.879 3 C -0.460 4.460 4 C -0.463 4.463 5 C -0.385 4.385 6 C -0.102 4.102 7 C -0.143 4.143 8 C -0.084 4.084 9 C -0.083 4.083 10 C 0.117 3.883 11 N -1.104 6.104 12 S 2.715 3.285 13 O -0.984 6.984 14 O -0.985 6.985 15 C -0.680 4.680 16 C -0.025 4.025 17 C -0.156 4.156 18 C -0.029 4.029 19 C -0.090 4.090 20 O -0.561 6.561 21 Si 0.970 3.030 22 H -0.251 1.251 23 H -0.250 1.250 24 H -0.271 1.271 25 C -0.118 4.118 26 C -0.025 4.025 27 C -0.137 4.137 28 C -0.101 4.101 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.131 0.869 39 H 0.125 0.875 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.431 0.569 45 H 0.153 0.847 46 H 0.140 0.860 47 H 0.108 0.892 48 H 0.402 0.598 49 H 0.153 0.847 50 H 0.155 0.845 51 H 0.132 0.868 52 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.759 7.610 -0.760 8.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.309 2.691 3 C -0.567 4.567 4 C -0.570 4.570 5 C -0.425 4.425 6 C -0.120 4.120 7 C -0.161 4.161 8 C -0.085 4.085 9 C -0.122 4.122 10 C -0.008 4.008 11 N -0.867 5.867 12 S 2.806 3.194 13 O -0.974 6.974 14 O -0.974 6.974 15 C -0.767 4.767 16 C -0.044 4.044 17 C -0.175 4.175 18 C -0.030 4.030 19 C -0.200 4.200 20 O -0.370 6.370 21 Si 0.794 3.206 22 H -0.175 1.175 23 H -0.174 1.174 24 H -0.196 1.196 25 C -0.137 4.137 26 C -0.044 4.044 27 C -0.155 4.155 28 C -0.119 4.119 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.148 0.852 39 H 0.143 0.857 40 H 0.104 0.896 41 H 0.114 0.886 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.268 0.732 45 H 0.171 0.829 46 H 0.158 0.842 47 H 0.126 0.874 48 H 0.253 0.747 49 H 0.171 0.829 50 H 0.173 0.827 51 H 0.150 0.850 52 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.428 6.431 -1.600 7.058 hybrid contribution 0.251 0.706 0.770 1.074 sum -2.176 7.136 -0.830 7.507 Atomic orbital electron populations 1.26300 1.21845 1.04318 1.04471 0.77208 0.65108 0.64789 0.61995 1.26253 1.06387 1.19273 1.04801 1.26297 1.06368 1.08410 1.15917 1.27814 1.03938 0.99576 1.11169 1.21343 0.97220 0.95195 0.98222 1.21404 1.00784 1.00392 0.93524 1.19870 0.99291 0.94212 0.95147 1.20757 0.93258 1.01890 0.96315 1.21428 0.95646 0.97469 0.86287 1.55221 1.27555 1.76220 1.27752 1.01019 0.72741 0.73313 0.72308 1.93571 1.85864 1.75338 1.42655 1.93564 1.84547 1.71621 1.47716 1.30862 1.21191 1.24650 1.00047 1.21069 0.92590 0.93473 0.97266 1.21368 1.00733 0.97028 0.98357 1.19971 0.94063 0.95154 0.93763 1.24878 0.87171 0.97429 1.10502 1.86458 1.26984 1.42238 1.81361 0.85388 0.81125 0.79343 0.74762 1.17522 1.17426 1.19637 1.21398 0.97248 0.96146 0.98859 1.21216 0.93065 0.93190 0.96926 1.21392 1.00546 0.94162 0.99436 1.21369 0.97115 1.00499 0.92878 0.91399 0.90835 0.91571 0.91275 0.90814 0.90871 0.91124 0.90828 0.91353 0.85164 0.85726 0.89600 0.88633 0.90263 0.90509 0.73190 0.82903 0.84234 0.87402 0.74686 0.82950 0.82705 0.85017 0.84795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.55 8.65 113.37 0.98 2.54 16 2 Si 1.12 -6.38 12.32 68.60 0.85 -5.53 16 3 C -0.46 2.14 8.53 113.37 0.97 3.11 16 4 C -0.46 1.78 8.53 113.37 0.97 2.74 16 5 C -0.38 0.49 4.59 22.27 0.10 0.59 16 6 C -0.10 -0.02 9.29 22.27 0.21 0.19 16 7 C -0.14 -0.11 9.70 22.27 0.22 0.10 16 8 C -0.08 0.05 5.13 -19.87 -0.10 -0.05 16 9 C -0.08 0.36 5.49 29.85 0.16 0.53 16 10 C 0.12 -0.40 6.21 86.38 0.54 0.14 16 11 N -1.10 3.21 6.00 -187.48 -1.12 2.08 16 12 S 2.72 10.72 5.74 -56.49 -0.32 10.39 16 13 O -0.98 -9.34 17.28 -128.00 -2.21 -11.55 16 14 O -0.98 -9.95 16.75 -128.00 -2.14 -12.10 16 15 C -0.68 -2.04 5.95 22.27 0.13 -1.91 16 16 C -0.02 -0.07 9.52 22.27 0.21 0.15 16 17 C -0.16 -0.32 8.67 22.27 0.19 -0.13 16 18 C -0.03 -0.04 5.38 -19.87 -0.11 -0.15 16 19 C -0.09 0.30 2.79 71.23 0.20 0.50 16 20 O -0.56 1.06 12.81 -148.98 -1.91 -0.85 16 21 Si 0.97 -2.97 25.14 68.60 1.72 -1.24 16 22 H -0.25 0.60 7.11 99.48 0.71 1.31 16 23 H -0.25 0.87 7.11 99.48 0.71 1.58 16 24 H -0.27 -0.33 7.04 99.48 0.70 0.37 16 25 C -0.12 -0.12 9.69 22.27 0.22 0.10 16 26 C -0.02 -0.05 9.52 22.27 0.21 0.17 16 27 C -0.14 0.13 9.70 22.27 0.22 0.34 16 28 C -0.10 0.10 9.29 22.27 0.21 0.31 16 29 H 0.07 -0.20 7.96 -2.39 -0.02 -0.21 16 30 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 31 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 32 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 33 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 34 H 0.07 -0.38 7.69 -2.39 -0.02 -0.40 16 35 H 0.07 -0.27 7.69 -2.39 -0.02 -0.29 16 36 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 37 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 38 H 0.13 -0.39 7.43 -2.91 -0.02 -0.41 16 39 H 0.12 -0.14 8.06 -2.92 -0.02 -0.17 16 40 H 0.09 -0.41 8.09 -2.39 -0.02 -0.42 16 41 H 0.10 -0.68 8.08 -2.39 -0.02 -0.70 16 42 H 0.08 -0.43 8.14 -2.39 -0.02 -0.44 16 43 H 0.08 -0.12 7.75 -2.38 -0.02 -0.14 16 44 H 0.43 -2.99 8.65 -96.75 -0.84 -3.83 16 45 H 0.15 0.00 7.61 -2.91 -0.02 -0.02 16 46 H 0.14 -0.12 4.87 -2.91 -0.01 -0.13 16 47 H 0.11 -0.91 7.96 -2.39 -0.02 -0.93 16 48 H 0.40 -4.43 8.74 -74.06 -0.65 -5.07 16 49 H 0.15 -0.41 8.06 -2.91 -0.02 -0.44 16 50 H 0.16 -0.17 7.62 -2.91 -0.02 -0.20 16 51 H 0.13 -0.59 8.06 -2.91 -0.02 -0.61 16 52 H 0.13 -0.65 7.43 -2.91 -0.02 -0.67 16 Total: 0.00 -23.63 441.60 0.57 -23.07 By element: Atomic # 1 Polarization: -13.73 SS G_CDS: 0.19 Total: -13.54 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 5.52 Total: 9.26 kcal Atomic # 7 Polarization: 3.21 SS G_CDS: -1.12 Total: 2.08 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -6.26 Total: -24.50 kcal Atomic # 14 Polarization: -9.35 SS G_CDS: 2.57 Total: -6.78 kcal Atomic # 16 Polarization: 10.72 SS G_CDS: -0.32 Total: 10.39 kcal Total: -23.63 0.57 -23.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_12221186_13421422.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.737 kcal (2) G-P(sol) polarization free energy of solvation -23.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds