Wall clock time and date at job start Mon Mar 8 2021 12:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46502 * 120.00141 * 2 1 4 4 H 1.09003 * 112.84910 * 186.56726 * 3 2 1 5 5 C 1.53781 * 113.68697 * 317.82839 * 3 2 1 6 6 C 1.53782 * 87.08082 * 139.99567 * 5 3 2 7 7 H 1.08993 * 113.69184 * 89.12503 * 6 5 3 8 8 C 1.50700 * 113.61072 * 220.02224 * 6 5 3 9 9 N 1.34776 * 119.99768 * 277.49053 * 8 6 5 10 10 O 1.21282 * 120.00359 * 97.22285 * 8 6 5 11 11 C 1.53778 * 113.61662 * 55.36482 * 3 2 1 12 12 S 1.65604 * 120.00108 * 179.97438 * 2 1 3 13 13 O 1.42097 * 106.39843 * 29.00239 * 12 2 1 14 14 O 1.42102 * 106.40166 * 161.91888 * 12 2 1 15 15 C 1.76195 * 107.22067 * 275.46129 * 12 2 1 16 16 C 1.33383 * 122.54195 * 164.90947 * 15 12 2 17 17 C 1.50697 * 125.20413 * 359.97438 * 16 15 12 18 18 O 1.42905 * 109.47034 * 39.11643 * 17 16 15 19 19 Si 1.86300 * 109.47160 * 159.11144 * 17 16 15 20 20 S 1.75888 * 109.59692 * 180.02562 * 16 15 12 21 21 C 1.75884 * 90.96921 * 359.97438 * 20 16 15 22 22 C 1.33393 * 109.59493 * 359.73410 * 21 20 16 23 23 H 1.08995 * 109.47260 * 90.00530 * 1 2 3 24 24 H 1.09003 * 109.47115 * 210.00357 * 1 2 3 25 25 H 1.09008 * 109.46878 * 329.99919 * 1 2 3 26 26 H 1.09005 * 113.61438 * 25.44607 * 5 3 2 27 27 H 1.09003 * 113.61575 * 254.54424 * 5 3 2 28 28 H 0.97005 * 120.00158 * 179.72801 * 9 8 6 29 29 H 0.96997 * 120.00027 * 359.72971 * 9 8 6 30 30 H 1.08993 * 113.61676 * 105.38840 * 11 3 2 31 31 H 1.09002 * 113.69075 * 334.49283 * 11 3 2 32 32 H 1.08998 * 109.47427 * 279.11873 * 17 16 15 33 33 H 0.96702 * 114.00256 * 65.77548 * 18 17 16 34 34 H 1.48503 * 109.99708 * 180.02562 * 19 17 16 35 35 H 1.48492 * 110.00279 * 301.32131 * 19 17 16 36 36 H 1.08004 * 125.20754 * 179.97438 * 21 20 16 37 37 H 1.08002 * 122.54489 * 180.24367 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 1 3.2733 1.1363 -0.1149 5 6 1.6025 2.3256 -0.9454 6 6 1.9009 3.3611 0.1517 7 1 2.8952 3.8016 0.0795 8 6 0.8147 4.3921 0.3200 9 7 0.7704 5.4636 -0.4963 10 8 -0.0224 4.2552 1.1869 11 6 1.8120 2.2027 1.1593 12 16 2.2930 -1.4342 0.0006 13 8 1.4611 -2.3780 -0.6599 14 8 3.6159 -1.1339 -0.4226 15 6 2.4151 -1.9652 1.6762 16 6 2.7575 -3.2101 2.0112 17 6 3.0804 -4.3141 1.0376 18 8 3.8307 -3.7809 -0.0555 19 14 4.0840 -5.6269 1.8979 20 16 2.7730 -3.3665 3.7630 21 6 2.3004 -1.6824 3.9475 22 6 2.1690 -1.1204 2.7449 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8901 0.5139 26 1 0.5386 2.1888 -1.1391 27 1 2.1838 2.4741 -1.8556 28 1 0.0690 6.1253 -0.3905 29 1 1.4399 5.5731 -1.1895 30 1 2.5623 2.2518 1.9484 31 1 0.8056 2.0332 1.5421 32 1 2.1545 -4.7512 0.6637 33 1 4.7070 -3.4545 0.1910 34 1 4.4094 -6.7211 0.9481 35 1 5.3342 -5.0368 2.4398 36 1 2.1446 -1.1791 4.8902 37 1 1.8878 -0.0858 2.6147 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_12311542_14772022.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:39:58 Heat of formation + Delta-G solvation = -73.353702 kcal Electronic energy + Delta-G solvation = -25597.467860 eV Core-core repulsion = 21789.382632 eV Total energy + Delta-G solvation = -3808.085229 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.058 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.42127 -39.72529 -39.14832 -38.29130 -37.82954 -36.87384 -35.27052 -34.50211 -31.86488 -28.36615 -27.61501 -26.74006 -26.29044 -24.42463 -22.18808 -21.65034 -20.30277 -19.93264 -19.46231 -18.71822 -18.37974 -17.90538 -17.67378 -17.20452 -17.05481 -16.62575 -16.38340 -15.82603 -15.61312 -15.35716 -15.24611 -15.02917 -14.47238 -14.24944 -14.16064 -13.94855 -13.76121 -13.59986 -13.32255 -13.21155 -13.05455 -12.80334 -12.74404 -12.54592 -12.30326 -12.10561 -12.03340 -11.67193 -11.62237 -11.26414 -10.86824 -10.63762 -10.13270 -10.09378 -9.73534 -5.21072 -0.78742 -0.52223 0.35329 0.64371 1.00334 1.15709 1.47999 1.61074 1.76975 1.83531 2.65047 2.66868 2.99978 3.25675 3.32952 3.45935 3.48813 3.70334 3.81731 3.88299 4.07911 4.15429 4.29522 4.34675 4.47731 4.54368 4.61079 4.70917 4.76045 4.81676 4.86993 4.90225 4.96656 5.02944 5.12581 5.38186 5.53402 5.90298 6.10022 6.49006 7.36125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.986 5.986 3 C 0.112 3.888 4 H 0.135 0.865 5 C -0.125 4.125 6 C -0.131 4.131 7 H 0.148 0.852 8 C 0.524 3.476 9 N -0.840 5.840 10 O -0.593 6.593 11 C -0.136 4.136 12 S 2.721 3.279 13 O -0.979 6.979 14 O -0.975 6.975 15 C -0.677 4.677 16 C -0.123 4.123 17 C -0.099 4.099 18 O -0.545 6.545 19 Si 0.766 3.234 20 S 0.197 5.803 21 C -0.208 4.208 22 C -0.096 4.096 23 H 0.065 0.935 24 H 0.075 0.925 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.103 0.897 28 H 0.404 0.596 29 H 0.418 0.582 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.147 0.853 33 H 0.394 0.606 34 H -0.261 1.261 35 H -0.255 1.255 36 H 0.201 0.799 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.032 3.114 3.131 4.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.824 5.824 3 C 0.006 3.994 4 H 0.153 0.847 5 C -0.165 4.165 6 C -0.152 4.152 7 H 0.166 0.834 8 C 0.310 3.690 9 N -0.403 5.403 10 O -0.473 6.473 11 C -0.176 4.176 12 S 2.812 3.188 13 O -0.970 6.970 14 O -0.965 6.965 15 C -0.778 4.778 16 C -0.244 4.244 17 C -0.207 4.207 18 O -0.355 6.355 19 Si 0.663 3.337 20 S 0.462 5.538 21 C -0.344 4.344 22 C -0.123 4.123 23 H 0.084 0.916 24 H 0.094 0.906 25 H 0.110 0.890 26 H 0.109 0.891 27 H 0.121 0.879 28 H 0.235 0.765 29 H 0.249 0.751 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.165 0.835 33 H 0.245 0.755 34 H -0.186 1.186 35 H -0.180 1.180 36 H 0.218 0.782 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.446 0.663 3.740 4.064 hybrid contribution 0.001 2.445 -1.195 2.722 sum 1.446 3.108 2.545 4.270 Atomic orbital electron populations 1.21691 0.77167 1.04259 1.03252 1.57298 1.15783 1.20446 1.88886 1.22755 0.97633 0.80964 0.98041 0.84725 1.23335 1.03054 0.92388 0.97681 1.22627 0.99716 0.93201 0.99684 0.83406 1.20772 0.85575 0.82638 0.80036 1.43838 1.34555 1.25161 1.36707 1.90738 1.42591 1.77773 1.36219 1.23433 1.04143 0.92872 0.97129 1.01074 0.72658 0.71745 0.73366 1.93521 1.69250 1.61604 1.72587 1.93494 1.38060 1.84347 1.80636 1.29798 1.19182 1.02687 1.26146 1.25117 1.00977 0.97435 1.00828 1.25488 1.04550 1.00057 0.90638 1.86639 1.33534 1.81278 1.34019 0.94197 0.80399 0.75900 0.83193 1.84024 1.63128 1.10377 0.96304 1.26306 1.07685 0.97211 1.03188 1.19872 1.01487 1.01103 0.89876 0.91586 0.90646 0.88984 0.89089 0.87865 0.76492 0.75074 0.88855 0.88759 0.83529 0.75522 1.18558 1.17984 0.78154 0.81761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.04 8.91 127.77 1.14 1.09 16 2 N -0.99 -1.45 2.82 -513.76 -1.45 -2.90 16 3 C 0.11 -0.25 4.30 45.52 0.20 -0.05 16 4 H 0.14 -0.33 6.98 -2.39 -0.02 -0.35 16 5 C -0.12 0.64 7.13 31.12 0.22 0.87 16 6 C -0.13 0.74 4.15 -11.01 -0.05 0.69 16 7 H 0.15 -1.65 8.14 -2.39 -0.02 -1.67 16 8 C 0.52 -0.17 7.63 87.66 0.67 0.50 16 9 N -0.84 5.73 8.87 -173.53 -1.54 4.19 16 10 O -0.59 -5.68 16.73 -3.04 -0.05 -5.73 16 11 C -0.14 0.48 6.12 31.12 0.19 0.67 16 12 S 2.72 21.77 4.07 -56.49 -0.23 21.54 16 13 O -0.98 -14.14 16.28 -122.82 -2.00 -16.13 16 14 O -0.98 -11.33 15.41 -120.69 -1.86 -13.19 16 15 C -0.68 -3.14 5.72 21.22 0.12 -3.02 16 16 C -0.12 -0.43 5.77 24.59 0.14 -0.28 16 17 C -0.10 -0.37 2.37 71.23 0.17 -0.21 16 18 O -0.55 -4.54 9.70 -125.06 -1.21 -5.75 16 19 Si 0.77 -1.02 31.10 68.60 2.13 1.11 16 20 S 0.20 -0.43 20.87 -56.49 -1.18 -1.61 16 21 C -0.21 0.55 11.23 66.72 0.75 1.30 16 22 C -0.10 -0.01 9.74 21.22 0.21 0.19 16 23 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 24 H 0.07 -0.06 7.93 -2.39 -0.02 -0.08 16 25 H 0.09 -0.26 6.31 -2.38 -0.02 -0.28 16 26 H 0.09 -0.34 6.95 -2.38 -0.02 -0.35 16 27 H 0.10 -0.85 8.14 -2.39 -0.02 -0.87 16 28 H 0.40 -2.79 8.93 -92.70 -0.83 -3.62 16 29 H 0.42 -5.45 8.83 -92.71 -0.82 -6.27 16 30 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 16 31 H 0.09 -0.06 5.90 -2.39 -0.01 -0.07 16 32 H 0.15 0.46 7.96 -2.39 -0.02 0.44 16 33 H 0.39 1.19 8.50 -74.06 -0.63 0.56 16 34 H -0.26 -0.99 7.11 99.48 0.71 -0.28 16 35 H -0.26 -0.28 7.11 99.48 0.71 0.42 16 36 H 0.20 -1.69 8.06 -2.91 -0.02 -1.71 16 37 H 0.17 -0.57 6.94 -2.91 -0.02 -0.59 16 Total: 0.00 -27.37 328.98 -4.72 -32.08 By element: Atomic # 1 Polarization: -14.28 SS G_CDS: -1.08 Total: -15.36 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 3.76 Total: 1.76 kcal Atomic # 7 Polarization: 4.28 SS G_CDS: -2.99 Total: 1.29 kcal Atomic # 8 Polarization: -35.68 SS G_CDS: -5.12 Total: -40.81 kcal Atomic # 14 Polarization: -1.02 SS G_CDS: 2.13 Total: 1.11 kcal Atomic # 16 Polarization: 21.33 SS G_CDS: -1.41 Total: 19.92 kcal Total: -27.37 -4.72 -32.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_12311542_14772022.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.269 kcal (2) G-P(sol) polarization free energy of solvation -27.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds