Wall clock time and date at job start Mon Mar 8 2021 12:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46493 * 120.00362 * 2 1 4 4 C 1.52998 * 109.47082 * 275.00198 * 3 2 1 5 5 H 1.08998 * 112.85033 * 316.19107 * 4 3 2 6 6 C 1.53781 * 113.61669 * 87.50000 * 4 3 2 7 7 C 1.53789 * 87.08348 * 139.98100 * 6 4 3 8 8 H 1.08997 * 113.61159 * 89.11534 * 7 6 4 9 9 O 1.42900 * 113.61452 * 220.02180 * 7 6 4 10 10 C 1.53786 * 87.07980 * 334.56908 * 7 6 4 11 11 S 1.65606 * 119.99538 * 180.02562 * 2 1 3 12 12 O 1.42102 * 106.40007 * 330.81132 * 11 2 1 13 13 O 1.42104 * 106.39808 * 197.89627 * 11 2 1 14 14 C 1.76196 * 107.21995 * 84.35569 * 11 2 1 15 15 C 1.38213 * 119.99843 * 165.73412 * 14 11 2 16 16 C 1.50700 * 120.00286 * 359.97438 * 15 14 11 17 17 O 1.42906 * 109.46970 * 284.24884 * 16 15 14 18 18 Si 1.86296 * 109.47359 * 164.24480 * 16 15 14 19 19 C 1.38258 * 120.00213 * 179.97438 * 15 14 11 20 20 C 1.38217 * 119.99726 * 359.97438 * 19 15 14 21 21 C 1.38258 * 119.99914 * 359.81389 * 20 19 15 22 22 C 1.38223 * 119.99862 * 0.43823 * 21 20 19 23 23 H 1.08991 * 109.47170 * 268.27307 * 1 2 3 24 24 H 1.09004 * 109.46599 * 28.27411 * 1 2 3 25 25 H 1.09001 * 109.46948 * 148.26951 * 1 2 3 26 26 H 1.09002 * 109.46818 * 34.99774 * 3 2 1 27 27 H 1.08998 * 109.47737 * 154.99977 * 3 2 1 28 28 H 1.08996 * 113.61474 * 254.52521 * 6 4 3 29 29 H 1.08995 * 113.61634 * 25.43268 * 6 4 3 30 30 H 0.96697 * 113.99859 * 277.49231 * 9 7 6 31 31 H 1.09000 * 113.61277 * 270.88439 * 10 7 6 32 32 H 1.08998 * 113.69135 * 139.98657 * 10 7 6 33 33 H 1.09005 * 109.46654 * 44.24374 * 16 15 14 34 34 H 0.96700 * 113.99442 * 299.99779 * 17 16 15 35 35 H 1.48495 * 109.99985 * 58.68149 * 18 16 15 36 36 H 1.48504 * 110.00094 * 179.97438 * 18 16 15 37 37 H 1.07994 * 120.00435 * 179.97438 * 19 15 14 38 38 H 1.07996 * 120.00197 * 179.97438 * 20 19 15 39 39 H 1.08001 * 120.00027 * 180.23220 * 21 20 19 40 40 H 1.08006 * 119.99472 * 179.78863 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.3437 1.7732 -1.4370 5 1 2.6240 0.9851 -2.1359 6 6 1.1576 2.6283 -1.9133 7 6 2.1901 3.5348 -2.6041 8 1 2.4273 3.2288 -3.6230 9 8 1.8909 4.9281 -2.4971 10 6 3.2056 3.0408 -1.5602 11 16 2.2929 -1.4343 -0.0006 12 8 1.4628 -2.3770 0.6638 13 8 3.6170 -1.1333 0.4184 14 6 2.4104 -1.9680 -1.6757 15 6 3.2938 -2.9735 -2.0203 16 6 4.1571 -3.6130 -0.9634 17 8 5.2237 -2.7264 -0.6191 18 14 4.8623 -5.2079 -1.6189 19 6 3.3856 -3.3928 -3.3345 20 6 2.5935 -2.8067 -4.3038 21 6 1.7066 -1.8039 -3.9583 22 6 1.6186 -1.3812 -2.6453 23 1 -0.3633 -0.0310 1.0271 24 1 -0.3633 0.9051 -0.4868 25 1 -0.3633 -0.8741 -0.5405 26 1 1.6502 2.0042 0.5894 27 1 3.1858 1.1176 0.4343 28 1 0.4971 2.1101 -2.6085 29 1 0.6193 3.1187 -1.1023 30 1 1.2529 5.2447 -3.1510 31 1 3.2272 3.6440 -0.6526 32 1 4.1988 2.8554 -1.9690 33 1 3.5553 -3.8184 -0.0781 34 1 5.8014 -2.4996 -1.3606 35 1 5.6588 -4.9454 -2.8443 36 1 5.7162 -5.8480 -0.5862 37 1 4.0762 -4.1781 -3.6039 38 1 2.6655 -3.1338 -5.3305 39 1 1.0849 -1.3485 -4.7150 40 1 0.9282 -0.5954 -2.3761 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_12312128_2726874.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:44:09 Heat of formation + Delta-G solvation = -79.128421 kcal Electronic energy + Delta-G solvation = -25922.154075 eV Core-core repulsion = 22218.318241 eV Total energy + Delta-G solvation = -3703.835834 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 314.107 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.82175 -40.59624 -38.12573 -37.82344 -37.40510 -36.64755 -35.59350 -32.91345 -32.53051 -29.75686 -27.14647 -26.84839 -26.40198 -24.51718 -23.58197 -22.72993 -20.70163 -20.09475 -19.14905 -18.64370 -18.52069 -17.82455 -17.37578 -17.03320 -16.60502 -16.48417 -16.09667 -15.90019 -15.65606 -15.29126 -15.16098 -14.99232 -14.50662 -14.18196 -13.99119 -13.82984 -13.65857 -13.54500 -13.36874 -13.09688 -12.97998 -12.84420 -12.72653 -12.55933 -12.34497 -12.21658 -11.97206 -11.89832 -11.48509 -11.37451 -10.90706 -10.68417 -10.51354 -10.19019 -10.13039 -5.03140 -0.59836 -0.35001 0.00085 1.12386 1.47350 1.81305 1.88643 2.26779 2.71057 3.11666 3.21249 3.32822 3.39362 3.40307 3.52991 3.60856 3.71092 3.74255 3.77994 3.82587 4.02775 4.08223 4.18067 4.22508 4.26895 4.40790 4.42948 4.46035 4.61082 4.63758 4.68183 4.72350 4.77914 4.80890 4.87763 4.96578 4.99256 5.03010 5.13492 5.25218 5.46518 5.59659 6.41616 6.62486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -1.000 6.000 3 C 0.125 3.875 4 C -0.136 4.136 5 H 0.094 0.906 6 C -0.163 4.163 7 C 0.075 3.925 8 H 0.081 0.919 9 O -0.559 6.559 10 C -0.121 4.121 11 S 2.680 3.320 12 O -0.953 6.953 13 O -0.921 6.921 14 C -0.648 4.648 15 C -0.015 4.015 16 C -0.119 4.119 17 O -0.491 6.491 18 Si 0.704 3.296 19 C -0.138 4.138 20 C -0.062 4.062 21 C -0.131 4.131 22 C -0.036 4.036 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.101 0.899 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.379 0.621 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.116 0.884 34 H 0.372 0.628 35 H -0.253 1.253 36 H -0.248 1.248 37 H 0.139 0.861 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.669 0.717 -6.283 7.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.839 5.839 3 C 0.000 4.000 4 C -0.157 4.157 5 H 0.112 0.888 6 C -0.201 4.201 7 C 0.016 3.984 8 H 0.098 0.902 9 O -0.365 6.365 10 C -0.159 4.159 11 S 2.769 3.231 12 O -0.943 6.943 13 O -0.911 6.911 14 C -0.733 4.733 15 C -0.017 4.017 16 C -0.228 4.228 17 O -0.296 6.296 18 Si 0.603 3.397 19 C -0.156 4.156 20 C -0.080 4.080 21 C -0.150 4.150 22 C -0.055 4.055 23 H 0.085 0.915 24 H 0.097 0.903 25 H 0.088 0.912 26 H 0.109 0.891 27 H 0.119 0.881 28 H 0.087 0.913 29 H 0.112 0.888 30 H 0.226 0.774 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.133 0.867 34 H 0.219 0.781 35 H -0.178 1.178 36 H -0.172 1.172 37 H 0.156 0.844 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.487 -0.241 -4.658 5.286 hybrid contribution -0.071 1.085 -1.662 1.986 sum -2.558 0.843 -6.320 6.870 Atomic orbital electron populations 1.21633 0.77986 1.03249 1.03137 1.57467 1.15431 1.21413 1.89598 1.21482 0.98075 0.84600 0.95805 1.22891 0.97855 0.96920 0.97984 0.88778 1.23782 0.96952 0.97978 1.01360 1.23326 0.96257 0.80786 0.98015 0.90165 1.86546 1.66221 1.23967 1.59755 1.23062 0.97809 0.95177 0.99889 1.02712 0.73743 0.72641 0.74015 1.93630 1.69032 1.60376 1.71266 1.93691 1.34842 1.83127 1.79393 1.30932 1.07391 1.09239 1.25740 1.19858 0.93494 0.92990 0.95350 1.25489 0.92309 1.04005 1.01005 1.86938 1.40632 1.64595 1.37466 0.94710 0.86381 0.79074 0.79546 1.21327 1.00873 1.00995 0.92425 1.21451 0.93007 0.93804 0.99716 1.21355 0.99309 0.97853 0.96433 1.20965 0.95099 0.96504 0.92904 0.91543 0.90299 0.91156 0.89140 0.88095 0.91295 0.88822 0.77404 0.88601 0.90430 0.86661 0.78061 1.17840 1.17225 0.84374 0.84634 0.84792 0.84645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 -0.17 9.40 59.85 0.56 0.39 16 2 N -1.00 0.14 2.41 -121.76 -0.29 -0.15 16 3 C 0.13 -0.12 5.47 -4.05 -0.02 -0.14 16 4 C -0.14 0.24 3.96 -89.80 -0.36 -0.11 16 5 H 0.09 -0.16 6.82 -51.93 -0.35 -0.52 16 6 C -0.16 0.43 6.61 -25.91 -0.17 0.26 16 7 C 0.08 -0.11 5.21 -25.91 -0.14 -0.24 16 8 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 9 O -0.56 0.01 13.67 -35.23 -0.48 -0.47 16 10 C -0.12 0.11 7.47 -25.91 -0.19 -0.08 16 11 S 2.68 8.24 4.41 -107.50 -0.47 7.77 16 12 O -0.95 -5.54 17.15 -57.17 -0.98 -6.52 16 13 O -0.92 -5.09 13.68 -66.26 -0.91 -6.00 16 14 C -0.65 -0.98 5.83 -39.59 -0.23 -1.21 16 15 C -0.02 -0.02 5.25 -104.62 -0.55 -0.57 16 16 C -0.12 -0.24 1.90 36.01 0.07 -0.17 16 17 O -0.49 -1.65 10.63 -57.33 -0.61 -2.26 16 18 Si 0.70 -0.22 30.28 -169.99 -5.15 -5.36 16 19 C -0.14 0.08 8.66 -39.58 -0.34 -0.26 16 20 C -0.06 0.11 10.05 -39.58 -0.40 -0.29 16 21 C -0.13 0.23 10.05 -39.58 -0.40 -0.16 16 22 C -0.04 0.03 8.39 -39.58 -0.33 -0.30 16 23 H 0.07 -0.12 8.14 -51.93 -0.42 -0.55 16 24 H 0.08 -0.33 7.19 -51.93 -0.37 -0.70 16 25 H 0.07 -0.18 7.72 -51.93 -0.40 -0.58 16 26 H 0.09 -0.20 7.81 -51.93 -0.41 -0.61 16 27 H 0.10 0.02 6.88 -51.93 -0.36 -0.34 16 28 H 0.07 -0.25 8.14 -51.93 -0.42 -0.67 16 29 H 0.09 -0.22 7.90 -51.93 -0.41 -0.63 16 30 H 0.38 -1.50 9.12 45.56 0.42 -1.09 16 31 H 0.10 -0.04 8.10 -51.93 -0.42 -0.47 16 32 H 0.08 -0.07 8.14 -51.93 -0.42 -0.50 16 33 H 0.12 0.32 7.10 -51.93 -0.37 -0.05 16 34 H 0.37 -0.11 8.70 45.56 0.40 0.28 16 35 H -0.25 -0.04 6.66 56.52 0.38 0.34 16 36 H -0.25 -0.67 7.11 56.52 0.40 -0.26 16 37 H 0.14 -0.31 4.87 -52.49 -0.26 -0.57 16 38 H 0.14 -0.56 8.06 -52.49 -0.42 -0.99 16 39 H 0.13 -0.55 8.06 -52.49 -0.42 -0.98 16 40 H 0.14 -0.40 6.16 -52.48 -0.32 -0.72 16 LS Contribution 331.28 15.07 4.99 4.99 Total: 0.00 -10.12 331.28 -11.01 -21.13 By element: Atomic # 1 Polarization: -5.60 SS G_CDS: -4.62 Total: -10.22 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -2.50 Total: -2.90 kcal Atomic # 7 Polarization: 0.14 SS G_CDS: -0.29 Total: -0.15 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -2.98 Total: -15.25 kcal Atomic # 14 Polarization: -0.22 SS G_CDS: -5.15 Total: -5.36 kcal Atomic # 16 Polarization: 8.24 SS G_CDS: -0.47 Total: 7.77 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -10.12 -11.01 -21.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_12312128_2726874.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.996 kcal (2) G-P(sol) polarization free energy of solvation -10.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds