Wall clock time and date at job start Mon Mar 8 2021 13:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86296 * 109.47666 * 2 1 4 4 C 1.50703 * 109.47026 * 120.00152 * 2 1 3 5 5 C 1.33394 * 122.53868 * 75.00016 * 4 2 1 6 6 S 1.76203 * 125.20371 * 359.75019 * 5 4 2 7 7 O 1.42094 * 106.40363 * 263.54381 * 6 5 4 8 8 O 1.42107 * 106.39773 * 36.46494 * 6 5 4 9 9 N 1.65595 * 107.21624 * 150.00325 * 6 5 4 10 10 C 1.46500 * 120.00262 * 65.00290 * 9 6 5 11 11 C 1.52998 * 109.47531 * 164.99626 * 10 9 6 12 12 H 1.09006 * 112.84644 * 45.33526 * 11 10 9 13 13 C 1.53778 * 113.61610 * 176.53034 * 11 10 9 14 14 C 1.53776 * 87.08173 * 139.98305 * 13 11 10 15 15 H 1.08999 * 113.61493 * 219.93776 * 14 13 11 16 16 O 1.42899 * 113.61654 * 89.11544 * 14 13 11 17 17 C 1.53778 * 113.61369 * 274.14102 * 11 10 9 18 18 S 1.75887 * 109.59233 * 180.02562 * 5 4 2 19 19 C 1.75884 * 90.96959 * 359.97438 * 18 5 4 20 20 C 1.33385 * 109.59663 * 0.02562 * 19 18 5 21 21 H 0.96696 * 113.99770 * 59.99671 * 1 2 3 22 22 H 1.09008 * 109.46842 * 239.99736 * 2 1 3 23 23 H 1.48505 * 109.99859 * 298.68463 * 3 2 1 24 24 H 1.48504 * 109.99906 * 59.99805 * 3 2 1 25 25 H 0.97001 * 120.00041 * 244.99718 * 9 6 5 26 26 H 1.08999 * 109.46971 * 285.00197 * 10 9 6 27 27 H 1.09005 * 109.46528 * 44.99658 * 10 9 6 28 28 H 1.09001 * 113.61140 * 254.53340 * 13 11 10 29 29 H 1.09004 * 113.61123 * 25.34851 * 13 11 10 30 30 H 0.96696 * 114.00209 * 179.97438 * 16 14 13 31 31 H 1.09000 * 113.61680 * 334.55988 * 17 11 10 32 32 H 1.09001 * 113.61758 * 105.47267 * 17 11 10 33 33 H 1.08000 * 125.20167 * 180.02562 * 19 18 5 34 34 H 1.07998 * 122.54483 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 1.8960 -2.0379 1.3572 6 16 1.2700 -3.1573 0.1490 7 8 -0.0702 -3.4443 0.5241 8 8 1.6244 -2.6198 -1.1178 9 7 2.1136 -4.5732 0.3089 10 6 1.9914 -5.3643 1.5359 11 6 2.5493 -6.7685 1.2953 12 1 3.5041 -6.7601 0.7694 13 6 2.5453 -7.6565 2.5507 14 6 2.1095 -8.8128 1.6355 15 1 1.3580 -9.4638 2.0822 16 8 3.2030 -9.5362 1.0670 17 6 1.5237 -7.7442 0.6946 18 16 2.5629 -2.4993 2.9179 19 6 2.8615 -0.8138 3.3222 20 6 2.4641 -0.0350 2.3149 21 1 -0.3933 0.4417 -0.7650 22 1 1.7923 -0.5139 -0.8900 23 1 1.5880 2.4585 -1.2242 24 1 1.5616 2.4678 1.2085 25 1 2.6888 -4.8789 -0.4099 26 1 2.5528 -4.8824 2.3363 27 1 0.9413 -5.4343 1.8198 28 1 3.5330 -7.7958 2.9901 29 1 1.7918 -7.3711 3.2849 30 1 2.9352 -10.2650 0.4907 31 1 0.4895 -7.4840 0.9198 32 1 1.6879 -7.9545 -0.3623 33 1 3.2997 -0.4631 4.2449 34 1 2.5520 1.0410 2.3429 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_12857624_13652106.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:19:20 Heat of formation + Delta-G solvation = -81.359412 kcal Electronic energy + Delta-G solvation = -21463.302574 eV Core-core repulsion = 18004.059862 eV Total energy + Delta-G solvation = -3459.242712 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.047 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.63516 -39.94437 -38.13226 -37.29101 -36.90298 -36.77520 -34.93371 -31.50919 -28.45729 -28.01623 -26.80409 -24.18169 -23.74351 -21.69407 -20.79086 -19.78052 -19.57011 -18.62769 -18.42923 -17.88341 -17.34517 -17.26197 -16.53564 -16.23012 -15.97548 -15.81365 -15.64330 -14.91125 -14.63669 -14.25615 -14.20458 -14.03744 -13.71136 -13.63625 -13.35867 -13.15040 -13.04025 -12.94529 -12.65286 -12.58343 -12.30813 -12.03029 -12.00518 -11.57005 -11.35121 -10.87135 -10.59314 -10.50192 -10.37086 -9.66083 -5.03133 -0.72825 -0.57669 0.23773 0.59016 1.18358 1.23139 1.55756 1.87966 1.94812 2.63667 2.99270 3.18832 3.35478 3.45324 3.60936 3.62564 3.76707 3.82668 3.92008 4.08155 4.12263 4.21708 4.38013 4.40945 4.53575 4.61892 4.67982 4.72422 4.78276 4.92119 4.95879 5.05069 5.08782 5.28309 5.81269 6.36333 6.60327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.113 4.113 3 Si 0.704 3.296 4 C 0.057 3.943 5 C -0.770 4.770 6 S 2.722 3.278 7 O -0.939 6.939 8 O -0.948 6.948 9 N -1.115 6.115 10 C 0.119 3.881 11 C -0.109 4.109 12 H 0.105 0.895 13 C -0.127 4.127 14 C 0.077 3.923 15 H 0.071 0.929 16 O -0.552 6.552 17 C -0.170 4.170 18 S 0.203 5.797 19 C -0.163 4.163 20 C -0.160 4.160 21 H 0.388 0.612 22 H 0.112 0.888 23 H -0.253 1.253 24 H -0.251 1.251 25 H 0.423 0.577 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.383 0.617 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.179 0.821 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.082 -1.464 1.883 4.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.224 4.224 3 Si 0.603 3.397 4 C 0.040 3.960 5 C -0.970 4.970 6 S 2.807 3.193 7 O -0.929 6.929 8 O -0.938 6.938 9 N -0.877 5.877 10 C -0.007 4.007 11 C -0.128 4.128 12 H 0.123 0.877 13 C -0.166 4.166 14 C 0.018 3.982 15 H 0.089 0.911 16 O -0.358 6.358 17 C -0.207 4.207 18 S 0.469 5.531 19 C -0.300 4.300 20 C -0.190 4.190 21 H 0.237 0.763 22 H 0.129 0.871 23 H -0.178 1.178 24 H -0.175 1.175 25 H 0.259 0.741 26 H 0.083 0.917 27 H 0.105 0.895 28 H 0.101 0.899 29 H 0.118 0.882 30 H 0.231 0.769 31 H 0.112 0.888 32 H 0.095 0.905 33 H 0.197 0.803 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.780 -1.643 3.157 5.192 hybrid contribution -0.930 0.967 -1.143 1.763 sum 2.850 -0.676 2.014 3.554 Atomic orbital electron populations 1.86570 1.16665 1.80594 1.50259 1.25175 0.85568 1.13351 0.98314 0.94789 0.90997 0.73123 0.80754 1.17918 0.92868 0.90508 0.94674 1.35641 1.26861 1.14412 1.20118 1.01289 0.73457 0.71759 0.72816 1.93625 1.32093 1.83373 1.83794 1.93560 1.84099 1.78130 1.38052 1.55534 1.65990 1.39092 1.27073 1.21536 1.02128 0.91965 0.85119 1.22691 1.00139 0.91421 0.98596 0.87728 1.23071 1.03536 0.93884 0.96066 1.22708 0.88804 0.92069 0.94637 0.91094 1.86451 1.32902 1.49167 1.67283 1.23809 0.99365 0.96964 1.00608 1.83992 1.56458 1.06163 1.06444 1.26180 1.03541 0.96952 1.03369 1.20295 1.03422 1.02048 0.93244 0.76301 0.87073 1.17766 1.17525 0.74113 0.91654 0.89515 0.89905 0.88246 0.76879 0.88787 0.90507 0.80323 0.82662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -1.73 12.86 -35.23 -0.45 -2.18 16 2 C -0.11 -0.24 2.19 36.01 0.08 -0.16 16 3 Si 0.70 -0.26 30.42 -169.99 -5.17 -5.43 16 4 C 0.06 0.14 5.17 -106.25 -0.55 -0.41 16 5 C -0.77 -1.89 6.48 29.04 0.19 -1.70 16 6 S 2.72 8.46 5.58 -107.50 -0.60 7.86 16 7 O -0.94 -6.03 17.49 -57.17 -1.00 -7.03 16 8 O -0.95 -4.39 15.53 -57.17 -0.89 -5.28 16 9 N -1.11 0.48 6.00 -10.61 -0.06 0.41 16 10 C 0.12 -0.15 5.57 -4.04 -0.02 -0.17 16 11 C -0.11 0.19 3.71 -89.81 -0.33 -0.15 16 12 H 0.10 -0.17 8.14 -51.93 -0.42 -0.59 16 13 C -0.13 0.24 7.48 -25.92 -0.19 0.05 16 14 C 0.08 -0.12 5.28 -25.83 -0.14 -0.25 16 15 H 0.07 -0.17 8.14 -51.93 -0.42 -0.60 16 16 O -0.55 0.21 13.59 -35.23 -0.48 -0.27 16 17 C -0.17 0.27 7.47 -25.83 -0.19 0.08 16 18 S 0.20 -0.05 20.67 -107.50 -2.22 -2.27 16 19 C -0.16 0.14 11.23 29.04 0.33 0.46 16 20 C -0.16 -0.08 8.74 -41.21 -0.36 -0.44 16 21 H 0.39 -0.40 8.74 45.56 0.40 0.00 16 22 H 0.11 0.21 5.80 -51.92 -0.30 -0.09 16 23 H -0.25 -0.34 7.11 56.52 0.40 0.06 16 24 H -0.25 -0.41 6.86 56.52 0.39 -0.02 16 25 H 0.42 -0.98 8.65 -34.47 -0.30 -1.28 16 26 H 0.07 -0.16 5.83 -51.93 -0.30 -0.46 16 27 H 0.09 -0.08 7.48 -51.93 -0.39 -0.47 16 28 H 0.08 -0.11 8.14 -51.93 -0.42 -0.53 16 29 H 0.10 -0.33 8.10 -51.93 -0.42 -0.75 16 30 H 0.38 -1.60 9.12 45.56 0.42 -1.18 16 31 H 0.09 -0.17 7.92 -51.93 -0.41 -0.58 16 32 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 33 H 0.18 -0.69 8.06 -52.49 -0.42 -1.12 16 34 H 0.16 -0.20 5.57 -52.49 -0.29 -0.49 16 LS Contribution 307.25 15.07 4.63 4.63 Total: 0.00 -10.52 307.25 -10.37 -20.89 By element: Atomic # 1 Polarization: -5.72 SS G_CDS: -2.93 Total: -8.64 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -1.20 Total: -2.69 kcal Atomic # 7 Polarization: 0.48 SS G_CDS: -0.06 Total: 0.41 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: -2.82 Total: -14.76 kcal Atomic # 14 Polarization: -0.26 SS G_CDS: -5.17 Total: -5.43 kcal Atomic # 16 Polarization: 8.41 SS G_CDS: -2.82 Total: 5.59 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -10.52 -10.37 -20.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_12857624_13652106.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.471 kcal (2) G-P(sol) polarization free energy of solvation -10.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds