Wall clock time and date at job start Mon Mar 8 2021 13:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86296 * 109.47666 * 2 1 4 4 C 1.50703 * 109.47026 * 120.00152 * 2 1 3 5 5 C 1.33394 * 122.53868 * 75.00016 * 4 2 1 6 6 S 1.76203 * 125.20371 * 359.75019 * 5 4 2 7 7 O 1.42094 * 106.40363 * 263.54381 * 6 5 4 8 8 O 1.42107 * 106.39773 * 36.46494 * 6 5 4 9 9 N 1.65595 * 107.21624 * 150.00325 * 6 5 4 10 10 C 1.46500 * 120.00262 * 65.00290 * 9 6 5 11 11 C 1.52998 * 109.47531 * 164.99626 * 10 9 6 12 12 H 1.09006 * 112.84644 * 45.33526 * 11 10 9 13 13 C 1.53778 * 113.61610 * 176.53034 * 11 10 9 14 14 C 1.53776 * 87.08173 * 139.98305 * 13 11 10 15 15 H 1.08999 * 113.61493 * 219.93776 * 14 13 11 16 16 O 1.42899 * 113.61654 * 89.11544 * 14 13 11 17 17 C 1.53778 * 113.61369 * 274.14102 * 11 10 9 18 18 S 1.75887 * 109.59233 * 180.02562 * 5 4 2 19 19 C 1.75884 * 90.96959 * 359.97438 * 18 5 4 20 20 C 1.33385 * 109.59663 * 0.02562 * 19 18 5 21 21 H 0.96696 * 113.99770 * 59.99671 * 1 2 3 22 22 H 1.09008 * 109.46842 * 239.99736 * 2 1 3 23 23 H 1.48505 * 109.99859 * 298.68463 * 3 2 1 24 24 H 1.48504 * 109.99906 * 59.99805 * 3 2 1 25 25 H 0.97001 * 120.00041 * 244.99718 * 9 6 5 26 26 H 1.08999 * 109.46971 * 285.00197 * 10 9 6 27 27 H 1.09005 * 109.46528 * 44.99658 * 10 9 6 28 28 H 1.09001 * 113.61140 * 254.53340 * 13 11 10 29 29 H 1.09004 * 113.61123 * 25.34851 * 13 11 10 30 30 H 0.96696 * 114.00209 * 179.97438 * 16 14 13 31 31 H 1.09000 * 113.61680 * 334.55988 * 17 11 10 32 32 H 1.09001 * 113.61758 * 105.47267 * 17 11 10 33 33 H 1.08000 * 125.20167 * 180.02562 * 19 18 5 34 34 H 1.07998 * 122.54483 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 1.8960 -2.0379 1.3572 6 16 1.2700 -3.1573 0.1490 7 8 -0.0702 -3.4443 0.5241 8 8 1.6244 -2.6198 -1.1178 9 7 2.1136 -4.5732 0.3089 10 6 1.9914 -5.3643 1.5359 11 6 2.5493 -6.7685 1.2953 12 1 3.5041 -6.7601 0.7694 13 6 2.5453 -7.6565 2.5507 14 6 2.1095 -8.8128 1.6355 15 1 1.3580 -9.4638 2.0822 16 8 3.2030 -9.5362 1.0670 17 6 1.5237 -7.7442 0.6946 18 16 2.5629 -2.4993 2.9179 19 6 2.8615 -0.8138 3.3222 20 6 2.4641 -0.0350 2.3149 21 1 -0.3933 0.4417 -0.7650 22 1 1.7923 -0.5139 -0.8900 23 1 1.5880 2.4585 -1.2242 24 1 1.5616 2.4678 1.2085 25 1 2.6888 -4.8789 -0.4099 26 1 2.5528 -4.8824 2.3363 27 1 0.9413 -5.4343 1.8198 28 1 3.5330 -7.7958 2.9901 29 1 1.7918 -7.3711 3.2849 30 1 2.9352 -10.2650 0.4907 31 1 0.4895 -7.4840 0.9198 32 1 1.6879 -7.9545 -0.3623 33 1 3.2997 -0.4631 4.2449 34 1 2.5520 1.0410 2.3429 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_12857624_13652106.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:19:19 Heat of formation + Delta-G solvation = -89.095007 kcal Electronic energy + Delta-G solvation = -21463.638014 eV Core-core repulsion = 18004.059862 eV Total energy + Delta-G solvation = -3459.578152 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.047 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.50972 -39.98682 -38.43413 -37.42457 -37.10567 -36.84162 -34.88720 -31.52519 -28.40871 -28.10356 -26.65620 -24.19437 -23.64653 -21.78304 -20.70429 -19.91093 -19.61027 -18.78490 -18.43056 -17.93689 -17.41336 -17.31234 -16.48758 -16.23683 -15.99268 -15.90540 -15.68160 -14.83984 -14.68757 -14.32498 -14.22125 -13.94983 -13.77618 -13.68054 -13.42839 -13.32962 -13.24861 -13.03777 -12.81202 -12.61418 -12.42205 -11.94923 -11.89751 -11.61103 -11.22970 -10.78797 -10.63939 -10.48654 -10.39216 -9.64733 -5.00340 -0.87160 -0.66695 0.20980 0.62071 1.16643 1.21733 1.56832 1.84536 1.85744 2.44552 3.17563 3.19099 3.32067 3.54062 3.62502 3.72848 3.74299 3.94588 3.96803 4.11661 4.18287 4.31925 4.39318 4.52285 4.63881 4.70080 4.79899 4.82550 4.91488 4.92413 5.05956 5.09481 5.22637 5.43224 5.89419 6.38383 6.87416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.142 4.142 3 Si 0.797 3.203 4 C 0.041 3.959 5 C -0.799 4.799 6 S 2.731 3.269 7 O -0.981 6.981 8 O -0.973 6.973 9 N -1.104 6.104 10 C 0.114 3.886 11 C -0.105 4.105 12 H 0.103 0.897 13 C -0.127 4.127 14 C 0.074 3.926 15 H 0.081 0.919 16 O -0.572 6.572 17 C -0.172 4.172 18 S 0.229 5.771 19 C -0.150 4.150 20 C -0.178 4.178 21 H 0.400 0.600 22 H 0.105 0.895 23 H -0.279 1.279 24 H -0.273 1.273 25 H 0.432 0.568 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.397 0.603 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.214 0.786 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.138 -1.239 3.162 6.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.250 4.250 3 Si 0.698 3.302 4 C 0.024 3.976 5 C -1.001 5.001 6 S 2.818 3.182 7 O -0.971 6.971 8 O -0.963 6.963 9 N -0.868 5.868 10 C -0.012 4.012 11 C -0.125 4.125 12 H 0.122 0.878 13 C -0.166 4.166 14 C 0.014 3.986 15 H 0.099 0.901 16 O -0.380 6.380 17 C -0.210 4.210 18 S 0.496 5.504 19 C -0.287 4.287 20 C -0.207 4.207 21 H 0.252 0.748 22 H 0.122 0.878 23 H -0.205 1.205 24 H -0.199 1.199 25 H 0.270 0.730 26 H 0.097 0.903 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.132 0.868 30 H 0.247 0.753 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.231 0.769 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 4.827 -1.471 4.398 6.694 hybrid contribution -1.247 0.836 -1.507 2.128 sum 3.580 -0.635 2.891 4.646 Atomic orbital electron populations 1.86521 1.17722 1.81350 1.51277 1.25668 0.85062 1.15970 0.98278 0.93708 0.89425 0.69272 0.77810 1.18240 0.93147 0.90814 0.95443 1.35480 1.28570 1.14486 1.21572 1.00597 0.72966 0.72159 0.72447 1.93570 1.34901 1.84212 1.84374 1.93515 1.84292 1.78845 1.39642 1.55251 1.65695 1.38018 1.27880 1.21703 1.02324 0.92243 0.84955 1.22658 0.99967 0.90936 0.98923 0.87834 1.23139 1.03766 0.93533 0.96116 1.22790 0.88800 0.92296 0.94666 0.90096 1.86410 1.33833 1.49967 1.67804 1.23827 0.99457 0.97172 1.00528 1.83820 1.55397 1.06697 1.04511 1.26665 1.01803 0.96273 1.04004 1.20468 1.04146 1.03039 0.93076 0.74839 0.87768 1.20490 1.19947 0.73011 0.90280 0.89855 0.90355 0.86820 0.75296 0.88705 0.90790 0.76934 0.81087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -4.63 12.86 -148.98 -1.92 -6.54 16 2 C -0.14 -0.77 2.19 71.24 0.16 -0.61 16 3 Si 0.80 -0.58 30.42 68.60 2.09 1.51 16 4 C 0.04 0.23 5.17 -20.92 -0.11 0.12 16 5 C -0.80 -4.53 6.48 66.72 0.43 -4.10 16 6 S 2.73 21.65 5.58 -56.49 -0.31 21.34 16 7 O -0.98 -14.78 17.49 -128.00 -2.24 -17.02 16 8 O -0.97 -11.12 15.53 -128.00 -1.99 -13.10 16 9 N -1.10 -0.08 6.00 -187.49 -1.12 -1.20 16 10 C 0.11 -0.26 5.57 86.38 0.48 0.22 16 11 C -0.10 0.36 3.71 -10.27 -0.04 0.32 16 12 H 0.10 -0.32 8.14 -2.38 -0.02 -0.34 16 13 C -0.13 0.53 7.48 31.12 0.23 0.77 16 14 C 0.07 -0.23 5.28 31.18 0.16 -0.07 16 15 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 16 O -0.57 0.45 13.59 -148.98 -2.02 -1.57 16 17 C -0.17 0.51 7.47 31.18 0.23 0.74 16 18 S 0.23 -0.28 20.67 -56.49 -1.17 -1.44 16 19 C -0.15 0.51 11.23 66.72 0.75 1.26 16 20 C -0.18 -0.04 8.74 21.22 0.19 0.14 16 21 H 0.40 -0.03 8.74 -74.06 -0.65 -0.68 16 22 H 0.10 0.61 5.80 -2.38 -0.01 0.60 16 23 H -0.28 -0.85 7.11 99.48 0.71 -0.15 16 24 H -0.27 -0.78 6.86 99.48 0.68 -0.10 16 25 H 0.43 -1.62 8.65 -96.75 -0.84 -2.45 16 26 H 0.08 -0.41 5.83 -2.39 -0.01 -0.43 16 27 H 0.08 -0.11 7.48 -2.38 -0.02 -0.13 16 28 H 0.08 -0.24 8.14 -2.39 -0.02 -0.25 16 29 H 0.11 -0.83 8.10 -2.39 -0.02 -0.85 16 30 H 0.40 -3.27 9.12 -74.06 -0.68 -3.95 16 31 H 0.09 -0.30 7.92 -2.39 -0.02 -0.31 16 32 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 33 H 0.21 -2.33 8.06 -2.91 -0.02 -2.36 16 34 H 0.17 -0.64 5.57 -2.91 -0.02 -0.65 16 Total: 0.00 -24.79 307.25 -7.17 -31.96 By element: Atomic # 1 Polarization: -11.74 SS G_CDS: -0.97 Total: -12.71 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: 2.49 Total: -1.20 kcal Atomic # 7 Polarization: -0.08 SS G_CDS: -1.12 Total: -1.20 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -8.17 Total: -38.24 kcal Atomic # 14 Polarization: -0.58 SS G_CDS: 2.09 Total: 1.51 kcal Atomic # 16 Polarization: 21.38 SS G_CDS: -1.48 Total: 19.89 kcal Total: -24.79 -7.17 -31.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_12857624_13652106.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.138 kcal (2) G-P(sol) polarization free energy of solvation -24.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds