Wall clock time and date at job start Mon Mar 8 2021 11:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 O 1.42101 * 108.58209 * 2 1 4 4 O 1.42108 * 108.57696 * 228.97721 * 2 1 3 5 5 C 1.81395 * 101.92345 * 114.48930 * 2 1 3 6 6 H 1.08995 * 112.85064 * 311.19931 * 5 2 1 7 7 C 1.53785 * 113.61303 * 82.50081 * 5 2 1 8 8 C 1.53779 * 87.08025 * 139.98391 * 7 5 2 9 9 H 1.09004 * 113.68643 * 220.00725 * 8 7 5 10 10 N 1.46500 * 113.61799 * 89.11978 * 8 7 5 11 11 S 1.65591 * 120.00361 * 117.49943 * 10 8 7 12 12 O 1.42101 * 106.40500 * 311.46049 * 11 10 8 13 13 O 1.42104 * 106.40278 * 178.54374 * 11 10 8 14 14 C 1.76195 * 107.22084 * 65.00206 * 11 10 8 15 15 C 1.38233 * 120.00186 * 89.99343 * 14 11 10 16 16 C 1.38234 * 120.00037 * 179.72636 * 15 14 11 17 17 C 1.38235 * 120.00220 * 0.28719 * 16 15 14 18 18 C 1.50700 * 120.00255 * 179.97438 * 17 16 15 19 19 O 1.42901 * 109.46685 * 299.99437 * 18 17 16 20 20 Si 1.86299 * 109.47239 * 179.97438 * 18 17 16 21 21 C 1.38237 * 119.99712 * 359.94731 * 17 16 15 22 22 C 1.38234 * 120.00048 * 0.02876 * 21 17 16 23 23 C 1.53779 * 87.08289 * 334.56466 * 8 7 5 24 24 H 1.09005 * 109.47275 * 305.51120 * 1 2 3 25 25 H 1.09006 * 109.47016 * 65.50748 * 1 2 3 26 26 H 1.08999 * 109.47366 * 185.50905 * 1 2 3 27 27 H 1.09004 * 113.61705 * 25.43247 * 7 5 2 28 28 H 1.09003 * 113.61462 * 254.52910 * 7 5 2 29 29 H 0.96998 * 119.99441 * 297.50634 * 10 8 7 30 30 H 1.08002 * 120.00157 * 0.02562 * 15 14 11 31 31 H 1.07999 * 120.00009 * 180.25939 * 16 15 14 32 32 H 1.09001 * 109.47383 * 59.99506 * 18 17 16 33 33 H 0.96705 * 114.00111 * 299.99964 * 19 18 17 34 34 H 1.48500 * 109.99981 * 58.67485 * 20 18 17 35 35 H 1.48498 * 110.00239 * 179.97438 * 20 18 17 36 36 H 1.08001 * 119.99657 * 180.02562 * 21 17 16 37 37 H 1.08004 * 119.99526 * 179.97438 * 22 21 17 38 38 H 1.09000 * 113.61526 * 139.98035 * 23 8 7 39 39 H 1.08992 * 113.61635 * 270.88680 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2666 -0.8841 -1.0163 5 6 2.1887 -0.7357 1.6152 6 1 1.6288 -0.2763 2.4297 7 6 2.1360 -2.2726 1.6191 8 6 3.3795 -2.2346 2.5231 9 1 4.1164 -3.0021 2.2867 10 7 3.0643 -2.1695 3.9523 11 16 3.5302 -3.3984 4.9597 12 8 3.1280 -4.6074 4.3305 13 8 3.1132 -3.0262 6.2662 14 6 5.2919 -3.4129 4.9849 15 6 5.9760 -2.6611 5.9218 16 6 7.3580 -2.6769 5.9451 17 6 8.0562 -3.4397 5.0278 18 6 9.5629 -3.4565 5.0529 19 8 10.0573 -2.1315 4.8475 20 14 10.1942 -4.5720 3.7009 21 6 7.3722 -4.1877 4.0878 22 6 5.9901 -4.1723 4.0647 23 6 3.6946 -0.8650 1.8987 24 1 -0.3634 0.5970 0.8365 25 1 -0.3633 0.4261 -0.9352 26 1 -0.3634 -1.0229 0.0987 27 1 2.3203 -2.7184 0.6416 28 1 1.2514 -2.6780 2.1103 29 1 2.5827 -1.4066 4.3084 30 1 5.4306 -2.0652 6.6386 31 1 7.8924 -2.0928 6.6798 32 1 9.9061 -3.8267 6.0189 33 1 9.7903 -1.7382 4.0054 34 1 9.7066 -4.0967 2.3812 35 1 11.6789 -4.5967 3.7146 36 1 7.9177 -4.7841 3.3713 37 1 5.4558 -4.7564 3.3300 38 1 4.0682 -0.1339 2.6156 39 1 4.3049 -0.9259 0.9978 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_12912160_13421422.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:07:10 Heat of formation + Delta-G solvation = -104.065951 kcal Electronic energy + Delta-G solvation = -26646.113148 eV Core-core repulsion = 22583.439855 eV Total energy + Delta-G solvation = -4062.673293 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.063 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.85145 -40.63068 -38.34817 -38.04654 -37.95489 -37.09207 -36.98185 -34.15528 -33.16225 -32.34185 -30.72597 -27.38872 -27.17277 -26.86133 -24.23974 -23.13483 -21.58328 -21.01684 -19.91988 -19.39702 -18.94633 -18.39383 -17.93134 -17.53333 -17.27202 -17.08116 -16.89242 -16.57566 -16.37788 -15.99833 -15.78373 -15.40641 -14.95647 -14.81778 -14.66784 -14.47580 -14.33515 -14.27242 -14.04534 -13.94582 -13.84640 -13.23034 -13.19117 -13.15750 -13.08444 -13.01823 -12.78415 -12.61261 -12.41873 -12.32725 -12.10104 -11.95766 -11.85808 -11.26810 -10.95295 -10.82347 -10.51730 -10.27496 -5.11588 -1.12627 -0.86372 -0.48285 0.05227 1.06943 1.43288 1.57283 1.69347 1.81461 2.19394 2.37770 2.58265 2.62987 2.91416 3.10622 3.12582 3.17366 3.25106 3.32253 3.48862 3.60203 3.64419 3.71559 3.75226 3.86241 4.02025 4.11694 4.22956 4.23545 4.26854 4.36848 4.46783 4.50100 4.55863 4.59517 4.67349 4.79883 4.84719 4.93688 5.10931 5.55420 5.62957 6.17211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.425 3.575 3 O -0.938 6.938 4 O -0.934 6.934 5 C -0.611 4.611 6 H 0.153 0.847 7 C -0.126 4.126 8 C 0.139 3.861 9 H 0.113 0.887 10 N -1.098 6.098 11 S 2.695 3.305 12 O -0.947 6.947 13 O -0.952 6.952 14 C -0.676 4.676 15 C -0.016 4.016 16 C -0.113 4.113 17 C -0.060 4.060 18 C -0.085 4.085 19 O -0.525 6.525 20 Si 0.687 3.313 21 C -0.137 4.137 22 C -0.017 4.017 23 C -0.115 4.115 24 H 0.128 0.872 25 H 0.130 0.870 26 H 0.130 0.870 27 H 0.120 0.880 28 H 0.098 0.902 29 H 0.421 0.579 30 H 0.143 0.857 31 H 0.138 0.862 32 H 0.125 0.875 33 H 0.378 0.622 34 H -0.256 1.256 35 H -0.253 1.253 36 H 0.139 0.861 37 H 0.146 0.854 38 H 0.098 0.902 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.905 -1.024 -0.060 1.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.607 3.393 3 O -0.935 6.935 4 O -0.931 6.931 5 C -0.720 4.720 6 H 0.171 0.829 7 C -0.166 4.166 8 C 0.030 3.970 9 H 0.131 0.869 10 N -0.856 5.856 11 S 2.784 3.216 12 O -0.937 6.937 13 O -0.942 6.942 14 C -0.763 4.763 15 C -0.035 4.035 16 C -0.132 4.132 17 C -0.061 4.061 18 C -0.195 4.195 19 O -0.331 6.331 20 Si 0.587 3.413 21 C -0.155 4.155 22 C -0.037 4.037 23 C -0.155 4.155 24 H 0.147 0.853 25 H 0.148 0.852 26 H 0.149 0.851 27 H 0.138 0.862 28 H 0.116 0.884 29 H 0.256 0.744 30 H 0.161 0.839 31 H 0.156 0.844 32 H 0.143 0.857 33 H 0.225 0.775 34 H -0.181 1.181 35 H -0.178 1.178 36 H 0.156 0.844 37 H 0.164 0.836 38 H 0.117 0.883 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.040 -1.597 -0.473 1.666 hybrid contribution -0.343 1.651 0.415 1.736 sum -0.382 0.054 -0.058 0.390 Atomic orbital electron populations 1.30235 1.26495 1.11762 1.11921 1.07775 0.78531 0.75609 0.77420 1.93618 1.79137 1.34306 1.86431 1.93617 1.79215 1.67123 1.53128 1.31781 1.07373 1.09087 1.23753 0.82871 1.23277 1.00868 0.89719 1.02754 1.21470 0.97501 0.98443 0.79618 0.86929 1.55425 1.71988 1.40933 1.17288 1.01985 0.73641 0.73156 0.72783 1.93630 1.80356 1.43044 1.76620 1.93633 1.80922 1.83133 1.36479 1.30962 1.27000 1.11075 1.07226 1.20998 0.94792 0.93508 0.94236 1.21201 0.93791 0.99216 0.98991 1.20715 0.96529 0.94699 0.94119 1.25211 0.91191 0.91084 1.11969 1.86637 1.75913 1.27757 1.42834 0.94880 0.81430 0.88163 0.76782 1.21178 0.94632 1.00292 0.99439 1.20932 0.94376 0.93373 0.94983 1.23046 0.90950 0.98436 1.03066 0.85327 0.85173 0.85117 0.86192 0.88386 0.74357 0.83879 0.84439 0.85679 0.77457 1.18102 1.17758 0.84419 0.83606 0.88349 0.87361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 3.09 10.62 101.05 1.07 4.17 16 2 S 2.42 -5.52 5.34 -107.50 -0.57 -6.10 16 3 O -0.94 -1.95 18.10 -57.83 -1.05 -3.00 16 4 O -0.93 -1.11 17.19 -57.83 -0.99 -2.10 16 5 C -0.61 2.86 3.99 -25.91 -0.10 2.76 16 6 H 0.15 -1.11 8.11 -51.93 -0.42 -1.53 16 7 C -0.13 0.54 7.42 -25.92 -0.19 0.35 16 8 C 0.14 -0.54 4.43 -67.12 -0.30 -0.83 16 9 H 0.11 -0.57 7.76 -51.93 -0.40 -0.97 16 10 N -1.10 3.86 5.73 -4.20 -0.02 3.84 16 11 S 2.69 -1.21 5.68 -107.50 -0.61 -1.82 16 12 O -0.95 -2.04 17.05 -57.17 -0.97 -3.02 16 13 O -0.95 -2.45 17.28 -57.17 -0.99 -3.44 16 14 C -0.68 0.60 5.95 -39.58 -0.24 0.36 16 15 C -0.02 0.01 9.52 -39.58 -0.38 -0.36 16 16 C -0.11 0.11 9.61 -39.58 -0.38 -0.28 16 17 C -0.06 0.08 5.39 -104.62 -0.56 -0.48 16 18 C -0.08 0.15 2.82 36.01 0.10 0.25 16 19 O -0.53 0.18 12.77 -35.23 -0.45 -0.27 16 20 Si 0.69 -1.57 29.79 -169.99 -5.06 -6.64 16 21 C -0.14 0.27 8.67 -39.58 -0.34 -0.08 16 22 C -0.02 0.03 9.24 -39.58 -0.37 -0.34 16 23 C -0.11 0.47 7.46 -25.92 -0.19 0.28 16 24 H 0.13 -0.81 8.14 -51.92 -0.42 -1.23 16 25 H 0.13 -0.58 8.14 -51.92 -0.42 -1.00 16 26 H 0.13 -0.82 8.14 -51.92 -0.42 -1.25 16 27 H 0.12 -0.55 7.36 -51.93 -0.38 -0.93 16 28 H 0.10 -0.50 8.14 -51.93 -0.42 -0.92 16 29 H 0.42 -2.27 8.79 -34.46 -0.30 -2.57 16 30 H 0.14 -0.28 7.62 -52.49 -0.40 -0.68 16 31 H 0.14 -0.23 8.06 -52.49 -0.42 -0.66 16 32 H 0.13 -0.30 7.96 -51.93 -0.41 -0.72 16 33 H 0.38 -1.21 8.70 45.56 0.40 -0.82 16 34 H -0.26 0.16 7.11 56.52 0.40 0.56 16 35 H -0.25 -0.31 7.11 56.52 0.40 0.09 16 36 H 0.14 -0.54 4.88 -52.49 -0.26 -0.79 16 37 H 0.15 -0.49 7.62 -52.48 -0.40 -0.89 16 38 H 0.10 -0.47 8.14 -51.93 -0.42 -0.89 16 39 H 0.11 -0.48 8.10 -51.93 -0.42 -0.90 16 LS Contribution 353.93 15.07 5.33 5.33 Total: 0.00 -15.50 353.93 -12.01 -27.51 By element: Atomic # 1 Polarization: -11.35 SS G_CDS: -4.74 Total: -16.09 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -1.88 Total: 5.80 kcal Atomic # 7 Polarization: 3.86 SS G_CDS: -0.02 Total: 3.84 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: -4.45 Total: -11.83 kcal Atomic # 14 Polarization: -1.57 SS G_CDS: -5.06 Total: -6.64 kcal Atomic # 16 Polarization: -6.74 SS G_CDS: -1.18 Total: -7.92 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -15.50 -12.01 -27.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_12912160_13421422.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.561 kcal (2) G-P(sol) polarization free energy of solvation -15.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds