Wall clock time and date at job start Mon Mar 8 2021 13:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86296 * 109.47050 * 2 1 4 4 C 1.50702 * 109.46880 * 120.00417 * 2 1 3 5 5 C 1.38234 * 120.00257 * 65.00285 * 4 2 1 6 6 C 1.38238 * 119.99675 * 180.25732 * 5 4 2 7 7 C 1.38228 * 120.00110 * 359.52133 * 6 5 4 8 8 S 1.76204 * 120.00087 * 180.21200 * 7 6 5 9 9 O 1.42105 * 106.39852 * 23.76129 * 8 7 6 10 10 O 1.42100 * 106.40268 * 156.67727 * 8 7 6 11 11 N 1.65599 * 107.22108 * 270.21952 * 8 7 6 12 12 C 1.46501 * 119.99739 * 64.99880 * 11 8 7 13 13 H 1.08997 * 112.85298 * 13.80169 * 12 11 8 14 14 C 1.53780 * 113.61236 * 145.00081 * 12 11 8 15 15 C 1.53784 * 87.08213 * 89.11148 * 14 12 11 16 16 H 1.08994 * 113.61982 * 270.88230 * 15 14 12 17 17 C 1.53002 * 113.61598 * 139.97769 * 15 14 12 18 18 O 1.42895 * 109.47463 * 175.00328 * 17 15 14 19 19 C 1.53780 * 113.61039 * 242.49536 * 12 11 8 20 20 C 1.38234 * 120.00090 * 0.43562 * 7 6 5 21 21 C 1.38235 * 119.99522 * 244.97298 * 4 2 1 22 22 H 0.96696 * 114.00393 * 59.99879 * 1 2 3 23 23 H 1.08996 * 109.46631 * 240.00142 * 2 1 3 24 24 H 1.48504 * 109.99525 * 60.00229 * 3 2 1 25 25 H 1.48499 * 109.99740 * 181.31725 * 3 2 1 26 26 H 1.08002 * 119.99744 * 359.97115 * 5 4 2 27 27 H 1.08004 * 119.99577 * 179.72816 * 6 5 4 28 28 H 0.96998 * 119.99527 * 244.99912 * 11 8 7 29 29 H 1.08992 * 113.61726 * 203.65761 * 14 12 11 30 30 H 1.08997 * 113.61566 * 334.57080 * 14 12 11 31 31 H 1.08998 * 109.47246 * 295.00810 * 17 15 14 32 32 H 1.09003 * 109.46846 * 55.00147 * 17 15 14 33 33 H 0.96700 * 114.00363 * 180.02562 * 18 17 15 34 34 H 1.09003 * 113.61702 * 25.43838 * 19 12 11 35 35 H 1.09007 * 113.61346 * 156.33801 * 19 12 11 36 36 H 1.08001 * 120.00324 * 179.78918 * 20 7 6 37 37 H 1.07996 * 120.00471 * 0.02562 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.6848 -2.0603 1.3983 6 6 2.1410 -2.7108 2.5295 7 6 2.8522 -2.0137 3.4881 8 16 3.4385 -2.8441 4.9274 9 8 3.5389 -4.2194 4.5842 10 8 4.5356 -2.0817 5.4115 11 7 2.2499 -2.7341 6.0752 12 6 0.9596 -3.3933 5.8589 13 1 0.9828 -4.1102 5.0382 14 6 0.3293 -3.9508 7.1461 15 6 -0.3409 -2.5775 7.3191 16 1 0.2635 -1.8640 7.8791 17 6 -1.7840 -2.6586 7.8210 18 8 -2.2800 -1.3400 8.0603 19 6 -0.2273 -2.4176 5.7938 20 6 3.0995 -0.6641 3.3199 21 6 2.6392 -0.0125 2.1910 22 1 -0.3934 0.4417 -0.7650 23 1 1.7923 -0.5138 -0.8900 24 1 1.5615 2.4677 1.2086 25 1 3.5346 1.7702 -0.0321 26 1 1.1317 -2.6056 0.6478 27 1 1.9445 -3.7644 2.6627 28 1 2.4081 -2.2333 6.8907 29 1 -0.3769 -4.7622 6.9706 30 1 1.0570 -4.1824 7.9238 31 1 -2.4030 -3.1488 7.0695 32 1 -1.8148 -3.2321 8.7474 33 1 -3.1917 -1.3150 8.3816 34 1 0.0512 -1.4117 5.4797 35 1 -1.0857 -2.8100 5.2485 36 1 3.6523 -0.1187 4.0705 37 1 2.8319 1.0420 2.0599 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_13270478_13421422.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:26:06 Heat of formation + Delta-G solvation = -94.820285 kcal Electronic energy + Delta-G solvation = -22715.721606 eV Core-core repulsion = 19166.742940 eV Total energy + Delta-G solvation = -3548.978665 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 300.091 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.75407 -40.63296 -38.25511 -37.77969 -37.41925 -36.87707 -33.98574 -33.22015 -32.29135 -28.70434 -27.30068 -26.78233 -24.24022 -23.65395 -22.87157 -21.07174 -20.35647 -19.27210 -18.61554 -18.51332 -18.28380 -17.36655 -16.95978 -16.83363 -16.37584 -16.08404 -15.88901 -15.68063 -15.26840 -14.95588 -14.73073 -14.38120 -14.10700 -13.94001 -13.87799 -13.80820 -13.41248 -13.12310 -13.05234 -12.86138 -12.81468 -12.43044 -12.14269 -11.97887 -11.85926 -11.69856 -11.48894 -10.89626 -10.69833 -10.55519 -10.34554 -10.20648 -5.11281 -0.73960 -0.39593 0.11843 1.09997 1.51046 1.82480 1.82647 2.25123 2.71754 3.06965 3.12248 3.20298 3.36009 3.52619 3.57418 3.63019 3.65335 3.74628 3.94641 4.00148 4.04890 4.15916 4.27725 4.32131 4.40659 4.50578 4.51390 4.60789 4.65863 4.72686 4.84625 4.87247 4.90078 4.97461 5.03243 5.17195 5.34625 5.60903 5.83112 6.42045 6.63027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.082 4.082 3 Si 0.686 3.314 4 C -0.017 4.017 5 C -0.110 4.110 6 C -0.017 4.017 7 C -0.674 4.674 8 S 2.697 3.303 9 O -0.950 6.950 10 O -0.954 6.954 11 N -1.097 6.097 12 C 0.122 3.878 13 H 0.108 0.892 14 C -0.135 4.135 15 C -0.111 4.111 16 H 0.098 0.902 17 C 0.084 3.916 18 O -0.574 6.574 19 C -0.147 4.147 20 C -0.010 4.010 21 C -0.145 4.145 22 H 0.386 0.614 23 H 0.082 0.918 24 H -0.248 1.248 25 H -0.252 1.252 26 H 0.139 0.861 27 H 0.145 0.855 28 H 0.421 0.579 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.380 0.620 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.145 0.855 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.544 1.020 -2.998 6.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.192 4.192 3 Si 0.586 3.414 4 C -0.018 4.018 5 C -0.129 4.129 6 C -0.036 4.036 7 C -0.760 4.760 8 S 2.786 3.214 9 O -0.940 6.940 10 O -0.944 6.944 11 N -0.855 5.855 12 C 0.014 3.986 13 H 0.126 0.874 14 C -0.174 4.174 15 C -0.130 4.130 16 H 0.116 0.884 17 C 0.006 3.994 18 O -0.380 6.380 19 C -0.187 4.187 20 C -0.030 4.030 21 C -0.163 4.163 22 H 0.234 0.766 23 H 0.099 0.901 24 H -0.173 1.173 25 H -0.177 1.177 26 H 0.157 0.843 27 H 0.163 0.837 28 H 0.256 0.744 29 H 0.117 0.883 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.227 0.773 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.162 0.838 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.575 0.942 -2.300 4.354 hybrid contribution -0.994 -0.016 0.223 1.019 sum -4.569 0.926 -2.077 5.104 Atomic orbital electron populations 1.86479 1.16607 1.81929 1.49933 1.24815 0.86234 1.10915 0.97279 0.95132 0.81005 0.77721 0.87505 1.19716 0.94068 0.94285 0.93699 1.21162 0.99647 0.93819 0.98275 1.21005 0.91071 0.99760 0.91812 1.30985 1.16649 1.06508 1.21896 1.01876 0.72497 0.73998 0.72982 1.93616 1.85141 1.31431 1.83832 1.93621 1.48789 1.72462 1.79553 1.55337 1.28400 1.67333 1.34454 1.21670 0.82287 0.94903 0.99696 0.87408 1.23314 0.99833 0.96753 0.97515 1.22570 0.95490 0.98171 0.96747 0.88352 1.22198 0.94136 0.84117 0.98958 1.86491 1.33931 1.28221 1.89325 1.23543 0.98187 1.00717 0.96222 1.20830 0.93365 0.92094 0.96665 1.21045 1.00804 0.99549 0.94897 0.76589 0.90057 1.17253 1.17653 0.84335 0.83743 0.74399 0.88302 0.89960 0.93343 0.93438 0.77263 0.90503 0.88749 0.83751 0.85428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.46 12.81 -35.23 -0.45 0.01 16 2 C -0.08 0.07 2.79 36.01 0.10 0.17 16 3 Si 0.69 -1.10 29.85 -169.99 -5.07 -6.18 16 4 C -0.02 -0.03 5.38 -104.62 -0.56 -0.59 16 5 C -0.11 -0.12 9.69 -39.58 -0.38 -0.51 16 6 C -0.02 -0.02 9.52 -39.59 -0.38 -0.40 16 7 C -0.67 -1.20 5.95 -39.59 -0.24 -1.44 16 8 S 2.70 5.37 5.71 -107.50 -0.61 4.76 16 9 O -0.95 -4.24 16.81 -57.17 -0.96 -5.20 16 10 O -0.95 -4.57 17.28 -57.17 -0.99 -5.55 16 11 N -1.10 0.74 5.73 -4.20 -0.02 0.72 16 12 C 0.12 -0.16 4.51 -67.12 -0.30 -0.47 16 13 H 0.11 -0.22 7.77 -51.93 -0.40 -0.62 16 14 C -0.13 0.29 7.43 -25.92 -0.19 0.10 16 15 C -0.11 0.12 3.83 -89.80 -0.34 -0.22 16 16 H 0.10 -0.04 8.10 -51.93 -0.42 -0.46 16 17 C 0.08 -0.10 6.88 37.16 0.26 0.16 16 18 O -0.57 -0.33 13.66 -35.23 -0.48 -0.81 16 19 C -0.15 0.16 7.43 -25.92 -0.19 -0.03 16 20 C -0.01 -0.02 9.52 -39.58 -0.38 -0.40 16 21 C -0.14 -0.31 8.67 -39.58 -0.34 -0.66 16 22 H 0.39 -2.24 8.74 45.56 0.40 -1.85 16 23 H 0.08 -0.22 7.96 -51.93 -0.41 -0.63 16 24 H -0.25 -0.36 7.05 56.52 0.40 0.04 16 25 H -0.25 -0.25 7.11 56.52 0.40 0.16 16 26 H 0.14 -0.09 8.06 -52.49 -0.42 -0.51 16 27 H 0.14 -0.11 7.62 -52.48 -0.40 -0.51 16 28 H 0.42 -0.89 8.78 -34.46 -0.30 -1.19 16 29 H 0.10 -0.33 8.10 -51.93 -0.42 -0.75 16 30 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 31 H 0.05 -0.11 7.84 -51.93 -0.41 -0.51 16 32 H 0.05 -0.09 8.14 -51.93 -0.42 -0.52 16 33 H 0.38 -1.33 9.12 45.56 0.42 -0.91 16 34 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 35 H 0.09 -0.18 7.90 -51.92 -0.41 -0.59 16 36 H 0.14 0.09 7.62 -52.49 -0.40 -0.31 16 37 H 0.13 0.17 4.87 -52.49 -0.26 -0.09 16 LS Contribution 324.52 15.07 4.89 4.89 Total: 0.00 -11.35 324.52 -10.57 -21.92 By element: Atomic # 1 Polarization: -6.38 SS G_CDS: -3.91 Total: -10.29 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -2.95 Total: -4.27 kcal Atomic # 7 Polarization: 0.74 SS G_CDS: -0.02 Total: 0.72 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -2.88 Total: -11.55 kcal Atomic # 14 Polarization: -1.10 SS G_CDS: -5.07 Total: -6.18 kcal Atomic # 16 Polarization: 5.37 SS G_CDS: -0.61 Total: 4.76 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -11.35 -10.57 -21.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_13270478_13421422.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.902 kcal (2) G-P(sol) polarization free energy of solvation -11.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds