Wall clock time and date at job start Mon Mar 8 2021 13:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86292 * 109.47281 * 2 1 4 4 C 1.50699 * 109.47258 * 239.99568 * 2 1 3 5 5 C 1.38215 * 120.00465 * 284.70700 * 4 2 1 6 6 S 1.76202 * 119.99610 * 359.97438 * 5 4 2 7 7 O 1.42097 * 106.40394 * 177.99691 * 6 5 4 8 8 O 1.42106 * 106.40401 * 310.92076 * 6 5 4 9 9 N 1.65608 * 107.21807 * 64.45865 * 6 5 4 10 10 C 1.46493 * 119.99922 * 65.32469 * 9 6 5 11 11 H 1.09002 * 112.85279 * 345.68890 * 10 9 6 12 12 C 1.53775 * 113.61615 * 116.89595 * 10 9 6 13 13 C 1.54045 * 86.98968 * 89.15893 * 12 10 9 14 14 H 1.09005 * 113.61603 * 270.88783 * 13 12 10 15 15 C 1.53002 * 113.69912 * 139.98717 * 13 12 10 16 16 O 1.42896 * 109.46791 * 87.46633 * 15 13 12 17 17 C 1.53787 * 113.61077 * 214.50391 * 10 9 6 18 18 C 1.38244 * 120.00438 * 180.02562 * 5 4 2 19 19 C 1.38216 * 119.99902 * 359.86572 * 18 5 4 20 20 C 1.38255 * 120.00266 * 0.09512 * 19 18 5 21 21 C 1.38216 * 119.99536 * 359.97438 * 20 19 18 22 22 H 0.96698 * 114.00182 * 60.00516 * 1 2 3 23 23 H 1.09004 * 109.47142 * 120.00073 * 2 1 3 24 24 H 1.48500 * 110.00201 * 59.99870 * 3 2 1 25 25 H 1.48497 * 110.00445 * 181.31916 * 3 2 1 26 26 H 0.96998 * 119.99791 * 245.31844 * 9 6 5 27 27 H 1.09010 * 113.61211 * 203.66242 * 12 10 9 28 28 H 1.09002 * 113.61295 * 334.56029 * 12 10 9 29 29 H 1.08997 * 109.46954 * 207.46847 * 15 13 12 30 30 H 1.08995 * 109.47034 * 327.46864 * 15 13 12 31 31 H 0.96700 * 114.00112 * 179.97438 * 16 15 13 32 32 H 1.08996 * 113.61635 * 25.42277 * 17 10 9 33 33 H 1.08997 * 113.61177 * 156.25217 * 17 10 9 34 34 H 1.07999 * 120.00277 * 179.97438 * 18 5 4 35 35 H 1.08007 * 119.99942 * 180.36228 * 19 18 5 36 36 H 1.07994 * 120.00610 * 179.97438 * 20 19 18 37 37 H 1.08002 * 119.99692 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.8753 -2.0896 -1.3035 6 16 1.2170 -3.0170 0.0423 7 8 1.2536 -4.3810 -0.3544 8 8 1.8558 -2.5312 1.2150 9 7 -0.3831 -2.6128 0.1800 10 6 -1.3200 -2.9554 -0.8929 11 1 -0.8186 -3.2419 -1.8173 12 6 -2.4209 -3.9376 -0.4591 13 6 -3.2502 -2.7035 -0.0564 14 1 -3.0808 -2.3797 0.9706 15 6 -4.7354 -2.8201 -0.4053 16 8 -5.4272 -3.4639 0.6665 17 6 -2.4339 -1.9142 -1.0936 18 6 2.3366 -2.7414 -2.4320 19 6 2.8514 -2.0138 -3.4884 20 6 2.9068 -0.6342 -3.4157 21 6 2.4469 0.0173 -2.2868 22 1 -0.3933 0.4416 -0.7651 23 1 1.7923 -0.5139 0.8900 24 1 1.5615 2.4678 1.2085 25 1 3.5346 1.7703 -0.0321 26 1 -0.7000 -2.1494 0.9710 27 1 -2.8521 -4.5027 -1.2855 28 1 -2.1363 -4.5681 0.3833 29 1 -5.1513 -1.8246 -0.5603 30 1 -4.8495 -3.4075 -1.3163 31 1 -6.3760 -3.5715 0.5138 32 1 -2.1599 -0.9124 -0.7630 33 1 -2.8677 -1.9263 -2.0935 34 1 2.2932 -3.8190 -2.4889 35 1 3.2064 -2.5226 -4.3724 36 1 3.3094 -0.0657 -4.2409 37 1 2.4905 1.0949 -2.2299 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_13270478_2726874.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:26:21 Heat of formation + Delta-G solvation = -92.028186 kcal Electronic energy + Delta-G solvation = -23698.792992 eV Core-core repulsion = 20149.935401 eV Total energy + Delta-G solvation = -3548.857591 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 300.091 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.81614 -40.50058 -38.41004 -37.62247 -37.28996 -36.80618 -33.78355 -32.90464 -32.48520 -28.59711 -27.06204 -26.63759 -24.49675 -23.59121 -22.86204 -20.95222 -20.26241 -19.23475 -18.46840 -18.24536 -18.10797 -17.22395 -16.91994 -16.69768 -16.11902 -16.00927 -15.84435 -15.74766 -15.50396 -15.10997 -14.76275 -14.26182 -14.00671 -13.85289 -13.68469 -13.60322 -13.27660 -13.15389 -13.02028 -12.82855 -12.72585 -12.36176 -12.13794 -11.79187 -11.68567 -11.54160 -11.38144 -10.80554 -10.66666 -10.55951 -10.33531 -10.14885 -5.13880 -0.60844 -0.32618 0.03119 1.12999 1.57369 1.92347 1.94984 2.29185 2.73660 3.15322 3.25469 3.28917 3.45835 3.49045 3.66898 3.69162 3.77743 3.81643 4.03802 4.05294 4.08443 4.22978 4.39581 4.42458 4.48786 4.49397 4.59669 4.68388 4.70964 4.79423 4.89890 5.00549 5.01789 5.14511 5.15902 5.16946 5.49361 5.61736 6.09414 6.33736 6.69615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.526 6.526 2 C -0.124 4.124 3 Si 0.696 3.304 4 C -0.014 4.014 5 C -0.658 4.658 6 S 2.698 3.302 7 O -0.957 6.957 8 O -0.960 6.960 9 N -1.078 6.078 10 C 0.134 3.866 11 H 0.097 0.903 12 C -0.145 4.145 13 C -0.110 4.110 14 H 0.098 0.902 15 C 0.084 3.916 16 O -0.574 6.574 17 C -0.137 4.137 18 C -0.022 4.022 19 C -0.134 4.134 20 C -0.058 4.058 21 C -0.136 4.136 22 H 0.378 0.622 23 H 0.149 0.851 24 H -0.248 1.248 25 H -0.256 1.256 26 H 0.424 0.576 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.379 0.621 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.146 0.854 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.318 4.519 -7.302 9.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.332 6.332 2 C -0.234 4.234 3 Si 0.597 3.403 4 C -0.015 4.015 5 C -0.744 4.744 6 S 2.787 3.213 7 O -0.947 6.947 8 O -0.950 6.950 9 N -0.838 5.838 10 C 0.026 3.974 11 H 0.115 0.885 12 C -0.185 4.185 13 C -0.129 4.129 14 H 0.117 0.883 15 C 0.006 3.994 16 O -0.379 6.379 17 C -0.176 4.176 18 C -0.041 4.041 19 C -0.153 4.153 20 C -0.076 4.076 21 C -0.154 4.154 22 H 0.226 0.774 23 H 0.166 0.834 24 H -0.173 1.173 25 H -0.180 1.180 26 H 0.261 0.739 27 H 0.110 0.890 28 H 0.096 0.904 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.226 0.774 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.163 0.837 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.605 4.118 -5.699 7.212 hybrid contribution -0.508 0.119 -0.495 0.720 sum -2.113 4.237 -6.194 7.797 Atomic orbital electron populations 1.86571 1.15814 1.81480 1.49304 1.25835 0.86207 1.12745 0.98592 0.95086 0.81408 0.76358 0.87475 1.19967 0.93955 0.92142 0.95456 1.30821 1.18183 1.06381 1.19058 1.01805 0.72465 0.73561 0.73481 1.93599 1.86132 1.31266 1.83678 1.93559 1.73991 1.81380 1.46048 1.55056 1.24509 1.75228 1.28995 1.21466 0.90008 0.96569 0.89350 0.88469 1.23553 0.95960 0.96633 1.02327 1.22597 0.92296 0.97494 1.00472 0.88347 1.22207 0.92172 0.95851 0.89151 1.86506 1.25110 1.82164 1.44144 1.23357 0.95469 0.99168 0.99580 1.21097 0.91455 1.00823 0.90752 1.21408 1.00281 0.94359 0.99256 1.21504 0.94079 0.94824 0.97157 1.21148 1.00730 0.99612 0.93916 0.77405 0.83427 1.17293 1.18018 0.73891 0.88978 0.90390 0.93596 0.93504 0.77386 0.89449 0.88972 0.83654 0.84571 0.84562 0.84495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 1.36 9.63 -35.23 -0.34 1.02 16 2 C -0.12 0.06 2.03 36.01 0.07 0.13 16 3 Si 0.70 -1.02 29.92 -169.99 -5.09 -6.10 16 4 C -0.01 0.00 5.25 -104.62 -0.55 -0.55 16 5 C -0.66 -0.63 5.88 -39.59 -0.23 -0.86 16 6 S 2.70 6.93 5.02 -107.50 -0.54 6.39 16 7 O -0.96 -4.92 16.72 -57.17 -0.96 -5.88 16 8 O -0.96 -5.23 15.53 -57.17 -0.89 -6.12 16 9 N -1.08 0.24 3.99 -4.20 -0.02 0.22 16 10 C 0.13 -0.19 4.42 -67.12 -0.30 -0.49 16 11 H 0.10 -0.21 8.05 -51.93 -0.42 -0.63 16 12 C -0.15 0.06 7.45 -25.78 -0.19 -0.13 16 13 C -0.11 0.12 3.83 -89.66 -0.34 -0.23 16 14 H 0.10 0.01 8.11 -51.93 -0.42 -0.41 16 15 C 0.08 -0.10 6.89 37.16 0.26 0.16 16 16 O -0.57 -0.44 13.66 -35.23 -0.48 -0.92 16 17 C -0.14 0.43 7.43 -25.91 -0.19 0.24 16 18 C -0.02 0.00 9.55 -39.59 -0.38 -0.38 16 19 C -0.13 0.20 10.05 -39.58 -0.40 -0.20 16 20 C -0.06 0.13 10.05 -39.58 -0.40 -0.27 16 21 C -0.14 0.26 8.66 -39.58 -0.34 -0.08 16 22 H 0.38 -2.42 8.29 45.56 0.38 -2.05 16 23 H 0.15 0.28 5.39 -51.93 -0.28 0.00 16 24 H -0.25 -0.42 7.11 56.52 0.40 -0.02 16 25 H -0.26 -0.38 7.11 56.52 0.40 0.02 16 26 H 0.42 -0.35 8.25 -34.47 -0.28 -0.63 16 27 H 0.09 -0.12 7.91 -51.92 -0.41 -0.53 16 28 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 29 H 0.05 -0.10 8.14 -51.93 -0.42 -0.52 16 30 H 0.05 -0.10 7.85 -51.93 -0.41 -0.51 16 31 H 0.38 -1.27 9.12 45.56 0.42 -0.85 16 32 H 0.09 -0.35 6.77 -51.93 -0.35 -0.70 16 33 H 0.09 -0.40 8.10 -51.93 -0.42 -0.82 16 34 H 0.15 -0.05 7.34 -52.49 -0.39 -0.44 16 35 H 0.14 -0.48 8.06 -52.48 -0.42 -0.90 16 36 H 0.14 -0.65 8.06 -52.49 -0.42 -1.07 16 37 H 0.14 -0.62 5.14 -52.49 -0.27 -0.89 16 LS Contribution 312.90 15.07 4.72 4.72 Total: 0.00 -10.27 312.90 -10.33 -20.61 By element: Atomic # 1 Polarization: -7.53 SS G_CDS: -3.74 Total: -11.28 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -2.99 Total: -2.66 kcal Atomic # 7 Polarization: 0.24 SS G_CDS: -0.02 Total: 0.22 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -2.66 Total: -11.89 kcal Atomic # 14 Polarization: -1.02 SS G_CDS: -5.09 Total: -6.10 kcal Atomic # 16 Polarization: 6.93 SS G_CDS: -0.54 Total: 6.39 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -10.27 -10.33 -20.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_13270478_2726874.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.423 kcal (2) G-P(sol) polarization free energy of solvation -10.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds