Wall clock time and date at job start Mon Mar 8 2021 13:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86299 * 109.47107 * 2 1 4 4 C 1.50704 * 109.46991 * 120.00008 * 2 1 3 5 5 C 1.38236 * 119.99829 * 64.99949 * 4 2 1 6 6 C 1.38236 * 119.99614 * 179.97438 * 5 4 2 7 7 C 1.38238 * 120.00363 * 0.03044 * 6 5 4 8 8 S 1.76192 * 119.99909 * 179.97438 * 7 6 5 9 9 O 1.42097 * 106.40525 * 336.45366 * 8 7 6 10 10 O 1.42109 * 106.39792 * 203.53676 * 8 7 6 11 11 N 1.65599 * 107.22277 * 90.00014 * 8 7 6 12 12 C 1.46499 * 119.99920 * 64.99204 * 11 8 7 13 13 H 1.08999 * 112.85169 * 346.20026 * 12 11 8 14 14 C 1.53783 * 113.68802 * 117.47297 * 12 11 8 15 15 C 1.53786 * 87.08094 * 139.99255 * 14 12 11 16 16 C 1.52990 * 113.69259 * 89.12614 * 15 14 12 17 17 O 1.42905 * 109.47235 * 80.93424 * 16 15 14 18 18 C 1.50702 * 113.60930 * 220.01741 * 15 14 12 19 19 C 1.38232 * 120.00029 * 331.52168 * 18 15 14 20 20 C 1.38242 * 119.99832 * 180.32829 * 19 18 15 21 21 C 1.38236 * 119.99893 * 359.94140 * 20 19 18 22 22 C 1.38230 * 120.00135 * 0.03289 * 21 20 19 23 23 C 1.38236 * 119.99644 * 151.79136 * 18 15 14 24 24 C 1.53783 * 87.08184 * 334.56426 * 15 14 12 25 25 C 1.38234 * 119.99603 * 0.24382 * 7 6 5 26 26 C 1.38233 * 119.99961 * 245.02219 * 4 2 1 27 27 H 0.96692 * 113.99876 * 299.99658 * 1 2 3 28 28 H 1.09003 * 109.46875 * 239.99670 * 2 1 3 29 29 H 1.48495 * 110.00032 * 178.67855 * 3 2 1 30 30 H 1.48502 * 109.99940 * 300.00103 * 3 2 1 31 31 H 1.08002 * 120.00267 * 0.02562 * 5 4 2 32 32 H 1.08002 * 119.99864 * 180.02562 * 6 5 4 33 33 H 0.97005 * 119.99658 * 245.00406 * 11 8 7 34 34 H 1.08996 * 113.61501 * 25.44435 * 14 12 11 35 35 H 1.09003 * 113.61094 * 254.53554 * 14 12 11 36 36 H 1.08999 * 109.47260 * 200.93125 * 16 15 14 37 37 H 1.08993 * 109.47549 * 320.93323 * 16 15 14 38 38 H 0.96696 * 114.00020 * 179.97438 * 17 16 15 39 39 H 1.07996 * 120.00559 * 0.25030 * 19 18 15 40 40 H 1.07993 * 119.99929 * 179.97438 * 20 19 18 41 41 H 1.07998 * 120.00036 * 180.02562 * 21 20 19 42 42 H 1.08006 * 120.00291 * 179.97438 * 22 21 20 43 43 H 1.07998 * 120.00220 * 359.72443 * 23 18 15 44 44 H 1.08993 * 113.61372 * 139.98119 * 24 15 14 45 45 H 1.09000 * 113.61738 * 270.88782 * 24 15 14 46 46 H 1.07995 * 119.99747 * 179.72356 * 25 7 6 47 47 H 1.08004 * 119.99638 * 0.02562 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.6847 -2.0602 1.3984 6 6 2.1460 -2.7119 2.5268 7 6 2.8533 -2.0138 3.4877 8 16 3.4405 -2.8445 4.9263 9 8 2.6111 -3.9855 5.0976 10 8 3.6070 -1.8476 5.9253 11 7 4.9556 -3.4155 4.5786 12 6 6.0487 -2.4773 4.3123 13 1 5.6998 -1.4598 4.1362 14 6 7.2006 -2.5666 5.3273 15 6 8.1583 -2.3872 4.1375 16 6 8.4794 -0.9250 3.8219 17 8 9.4940 -0.4571 4.7129 18 6 9.3894 -3.2526 4.2178 19 6 9.8875 -3.6332 5.4498 20 6 11.0208 -4.4214 5.5237 21 6 11.6552 -4.8300 4.3654 22 6 11.1567 -4.4498 3.1334 23 6 10.0238 -3.6611 3.0596 24 6 7.0465 -2.9781 3.2546 25 6 3.0950 -0.6628 3.3225 26 6 2.6384 -0.0122 2.1915 27 1 -0.3933 0.4416 0.7650 28 1 1.7924 -0.5139 -0.8900 29 1 3.5346 1.7703 0.0322 30 1 1.5615 2.4679 -1.2085 31 1 1.1324 -2.6057 0.6475 32 1 1.9536 -3.7666 2.6578 33 1 5.1191 -4.3713 4.5512 34 1 7.2822 -3.5401 5.8105 35 1 7.2239 -1.7381 6.0352 36 1 8.8333 -0.8444 2.7941 37 1 7.5807 -0.3208 3.9452 38 1 9.7484 0.4648 4.5699 39 1 9.3922 -3.3137 6.3548 40 1 11.4102 -4.7184 6.4862 41 1 12.5403 -5.4461 4.4230 42 1 11.6526 -4.7687 2.2284 43 1 9.6346 -3.3639 2.0970 44 1 6.9453 -2.4820 2.2894 45 1 7.0859 -4.0642 3.1713 46 1 3.6437 -0.1165 4.0753 47 1 2.8303 1.0425 2.0606 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_13270514_13421422.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:26:24 Heat of formation + Delta-G solvation = -70.171139 kcal Electronic energy + Delta-G solvation = -32312.365535 eV Core-core repulsion = 27940.475937 eV Total energy + Delta-G solvation = -4371.889598 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 376.122 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.59287 -40.68507 -39.19586 -38.40129 -37.70992 -37.22429 -37.03822 -34.55396 -33.01908 -32.20733 -31.80129 -31.48251 -28.01501 -27.23643 -26.86107 -24.72523 -24.08687 -23.15480 -23.00118 -22.49650 -20.80768 -19.72562 -19.30407 -18.62872 -18.29544 -18.16249 -17.99891 -17.23310 -16.79845 -16.55418 -16.18825 -16.08635 -15.89506 -15.82320 -15.69667 -15.46962 -15.26491 -14.79856 -14.49886 -14.40198 -14.29203 -14.10037 -13.93221 -13.81555 -13.67596 -13.57263 -13.31780 -13.28528 -13.23610 -12.97890 -12.64322 -12.44504 -12.41401 -12.13704 -12.02440 -11.97060 -11.81356 -11.46278 -11.32104 -10.75238 -10.61350 -10.49594 -10.32712 -10.15405 -9.77715 -9.54956 -5.02056 -0.76467 -0.38787 0.18418 0.50127 0.54259 1.23754 1.60063 1.87082 1.94558 2.32230 2.68600 2.90789 3.08529 3.20814 3.35118 3.40372 3.52175 3.66482 3.70177 3.77322 3.82177 3.91208 3.92077 4.14638 4.18353 4.19143 4.24571 4.31059 4.32419 4.38218 4.49451 4.57328 4.58984 4.62243 4.71792 4.78955 4.80039 4.83582 4.84714 4.93524 4.97961 5.05198 5.07883 5.16670 5.19368 5.24706 5.39499 5.62719 5.66868 5.69301 5.74473 5.97740 6.15857 6.67287 6.94234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.084 4.084 3 Si 0.773 3.227 4 C -0.064 4.064 5 C -0.123 4.123 6 C -0.026 4.026 7 C -0.676 4.676 8 S 2.706 3.294 9 O -0.990 6.990 10 O -0.978 6.978 11 N -1.093 6.093 12 C 0.126 3.874 13 H 0.129 0.871 14 C -0.141 4.141 15 C -0.045 4.045 16 C 0.097 3.903 17 O -0.587 6.587 18 C -0.056 4.056 19 C -0.120 4.120 20 C -0.133 4.133 21 C -0.139 4.139 22 C -0.130 4.130 23 C -0.125 4.125 24 C -0.119 4.119 25 C -0.023 4.023 26 C -0.135 4.135 27 H 0.397 0.603 28 H 0.115 0.885 29 H -0.273 1.273 30 H -0.301 1.301 31 H 0.140 0.860 32 H 0.146 0.854 33 H 0.429 0.571 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.395 0.605 39 H 0.120 0.880 40 H 0.128 0.872 41 H 0.130 0.870 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.097 0.903 45 H 0.100 0.900 46 H 0.162 0.838 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.875 3.720 -3.525 5.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.193 4.193 3 Si 0.678 3.322 4 C -0.065 4.065 5 C -0.141 4.141 6 C -0.046 4.046 7 C -0.764 4.764 8 S 2.797 3.203 9 O -0.980 6.980 10 O -0.968 6.968 11 N -0.853 5.853 12 C 0.019 3.981 13 H 0.147 0.853 14 C -0.181 4.181 15 C -0.046 4.046 16 C 0.019 3.981 17 O -0.395 6.395 18 C -0.056 4.056 19 C -0.138 4.138 20 C -0.151 4.151 21 C -0.157 4.157 22 C -0.148 4.148 23 C -0.142 4.142 24 C -0.158 4.158 25 C -0.042 4.042 26 C -0.153 4.153 27 H 0.247 0.753 28 H 0.132 0.868 29 H -0.200 1.200 30 H -0.229 1.229 31 H 0.158 0.842 32 H 0.164 0.836 33 H 0.266 0.734 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.244 0.756 39 H 0.138 0.862 40 H 0.146 0.854 41 H 0.148 0.852 42 H 0.152 0.848 43 H 0.151 0.849 44 H 0.116 0.884 45 H 0.118 0.882 46 H 0.179 0.821 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.880 3.473 -3.449 5.243 hybrid contribution 0.265 -0.496 -1.015 1.160 sum 2.144 2.977 -4.464 5.778 Atomic orbital electron populations 1.86506 1.16878 1.82182 1.50534 1.25384 0.85576 1.11349 0.97019 0.93683 0.78443 0.74783 0.85291 1.20856 0.94834 0.94761 0.96033 1.21326 1.00062 0.94542 0.98217 1.21118 0.91495 1.00544 0.91417 1.30801 1.16768 1.06912 1.21949 1.01305 0.72396 0.72740 0.73814 1.93570 1.67128 1.51227 1.86113 1.93584 1.85931 1.61513 1.55801 1.55291 1.24357 1.17370 1.88296 1.22484 0.85266 0.93495 0.96899 0.85315 1.23595 0.93996 1.03561 0.96926 1.20653 0.91256 0.93953 0.98749 1.22021 0.91378 0.91734 0.92919 1.86487 1.58877 1.34135 1.59993 1.19537 0.96227 0.96827 0.93007 1.21144 0.96666 0.98125 0.97833 1.21381 0.96152 0.98498 0.99106 1.21390 1.00631 1.00808 0.92844 1.21396 0.96754 0.98448 0.98241 1.21159 0.96026 0.98631 0.98430 1.23453 0.91651 1.02605 0.98119 1.21199 0.94452 0.91718 0.96871 1.21395 0.99176 1.00929 0.93829 0.75312 0.86762 1.19955 1.22894 0.84192 0.83612 0.73410 0.89118 0.90476 0.92225 0.91181 0.75561 0.86187 0.85408 0.85165 0.84844 0.84877 0.88410 0.88152 0.82067 0.82144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.35 12.83 -148.98 -1.91 -0.56 16 2 C -0.08 0.35 2.80 71.24 0.20 0.55 16 3 Si 0.77 -4.59 29.80 68.60 2.04 -2.54 16 4 C -0.06 0.22 5.35 -19.86 -0.11 0.12 16 5 C -0.12 0.19 9.69 22.27 0.22 0.40 16 6 C -0.03 0.02 9.52 22.27 0.21 0.23 16 7 C -0.68 0.61 5.95 22.27 0.13 0.74 16 8 S 2.71 4.90 5.68 -56.49 -0.32 4.57 16 9 O -0.99 -8.47 17.28 -128.00 -2.21 -10.68 16 10 O -0.98 -6.91 17.04 -128.00 -2.18 -9.09 16 11 N -1.09 4.28 5.79 -167.18 -0.97 3.32 16 12 C 0.13 -0.68 4.00 45.52 0.18 -0.50 16 13 H 0.13 -1.12 7.30 -2.39 -0.02 -1.14 16 14 C -0.14 0.31 5.99 31.12 0.19 0.50 16 15 C -0.05 0.14 0.88 -52.40 -0.05 0.10 16 16 C 0.10 -0.47 6.37 71.98 0.46 -0.01 16 17 O -0.59 0.56 13.17 -148.98 -1.96 -1.40 16 18 C -0.06 -0.08 4.36 -19.87 -0.09 -0.16 16 19 C -0.12 -0.45 9.03 22.27 0.20 -0.25 16 20 C -0.13 -0.48 10.05 22.27 0.22 -0.26 16 21 C -0.14 -0.38 10.05 22.27 0.22 -0.16 16 22 C -0.13 -0.22 10.05 22.27 0.22 0.00 16 23 C -0.12 -0.10 9.39 22.27 0.21 0.11 16 24 C -0.12 0.81 6.66 31.12 0.21 1.02 16 25 C -0.02 0.09 9.27 22.27 0.21 0.30 16 26 C -0.14 0.75 8.67 22.27 0.19 0.95 16 27 H 0.40 -4.04 8.70 -74.06 -0.64 -4.68 16 28 H 0.11 -0.40 7.96 -2.39 -0.02 -0.42 16 29 H -0.27 0.74 7.11 99.48 0.71 1.45 16 30 H -0.30 -0.76 7.11 99.48 0.71 -0.05 16 31 H 0.14 -0.39 8.06 -2.91 -0.02 -0.42 16 32 H 0.15 -0.28 7.62 -2.91 -0.02 -0.30 16 33 H 0.43 -2.84 8.94 -96.74 -0.87 -3.71 16 34 H 0.09 -0.12 7.44 -2.39 -0.02 -0.14 16 35 H 0.08 -0.04 8.10 -2.39 -0.02 -0.06 16 36 H 0.06 -0.40 8.14 -2.39 -0.02 -0.42 16 37 H 0.07 -0.61 7.34 -2.39 -0.02 -0.63 16 38 H 0.39 -3.48 9.12 -74.06 -0.68 -4.16 16 39 H 0.12 0.36 7.02 -2.91 -0.02 0.34 16 40 H 0.13 0.11 8.06 -2.91 -0.02 0.09 16 41 H 0.13 -0.06 8.06 -2.91 -0.02 -0.08 16 42 H 0.13 -0.26 8.06 -2.91 -0.02 -0.28 16 43 H 0.13 -0.42 8.03 -2.91 -0.02 -0.45 16 44 H 0.10 -0.97 8.10 -2.39 -0.02 -0.99 16 45 H 0.10 -0.66 8.09 -2.39 -0.02 -0.68 16 46 H 0.16 -1.22 7.61 -2.91 -0.02 -1.24 16 47 H 0.16 -1.77 4.91 -2.91 -0.01 -1.78 16 Total: 0.00 -26.88 400.53 -5.59 -32.47 By element: Atomic # 1 Polarization: -18.64 SS G_CDS: -1.12 Total: -19.76 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 3.04 Total: 3.68 kcal Atomic # 7 Polarization: 4.28 SS G_CDS: -0.97 Total: 3.32 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -8.27 Total: -21.74 kcal Atomic # 14 Polarization: -4.59 SS G_CDS: 2.04 Total: -2.54 kcal Atomic # 16 Polarization: 4.90 SS G_CDS: -0.32 Total: 4.57 kcal Total: -26.88 -5.59 -32.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_13270514_13421422.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.700 kcal (2) G-P(sol) polarization free energy of solvation -26.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds