Wall clock time and date at job start Mon Mar 8 2021 13:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86299 * 109.46955 * 2 1 4 4 C 1.50701 * 109.47195 * 239.99903 * 2 1 3 5 5 C 1.38210 * 119.99761 * 284.07974 * 4 2 1 6 6 S 1.76196 * 120.00404 * 359.97438 * 5 4 2 7 7 O 1.42100 * 106.40350 * 177.39538 * 6 5 4 8 8 O 1.42096 * 106.40397 * 310.32024 * 6 5 4 9 9 N 1.65602 * 107.21614 * 63.86143 * 6 5 4 10 10 C 1.46504 * 120.00062 * 64.90872 * 9 6 5 11 11 H 1.08997 * 112.85046 * 346.15031 * 10 9 6 12 12 C 1.53777 * 113.61316 * 117.34850 * 10 9 6 13 13 C 1.53950 * 87.01976 * 139.94975 * 12 10 9 14 14 C 1.53001 * 113.53879 * 89.18889 * 13 12 10 15 15 O 1.42901 * 109.47475 * 82.49979 * 14 13 12 16 16 C 1.50699 * 113.74176 * 220.05298 * 13 12 10 17 17 C 1.38237 * 120.00201 * 340.24626 * 16 13 12 18 18 C 1.38237 * 119.99857 * 179.76495 * 17 16 13 19 19 C 1.38233 * 119.99895 * 0.51197 * 18 17 16 20 20 C 1.38238 * 120.00389 * 359.74277 * 19 18 17 21 21 C 1.38234 * 119.99731 * 0.02562 * 20 19 18 22 22 C 1.53775 * 87.11274 * 334.63425 * 13 12 10 23 23 C 1.38261 * 119.99655 * 179.97438 * 5 4 2 24 24 C 1.38217 * 120.00259 * 0.02562 * 23 5 4 25 25 C 1.38257 * 119.99503 * 359.97438 * 24 23 5 26 26 C 1.38212 * 120.00280 * 359.97438 * 25 24 23 27 27 H 0.96689 * 113.99913 * 60.00098 * 1 2 3 28 28 H 1.09006 * 109.47117 * 119.99833 * 2 1 3 29 29 H 1.48504 * 110.00135 * 298.68001 * 3 2 1 30 30 H 1.48497 * 110.00267 * 60.00074 * 3 2 1 31 31 H 0.97004 * 119.99779 * 244.90913 * 9 6 5 32 32 H 1.09000 * 113.61288 * 254.52853 * 12 10 9 33 33 H 1.08999 * 113.61964 * 25.43243 * 12 10 9 34 34 H 1.08996 * 109.47183 * 202.50542 * 14 13 12 35 35 H 1.09002 * 109.46928 * 322.50546 * 14 13 12 36 36 H 0.96695 * 114.00336 * 180.02562 * 15 14 13 37 37 H 1.07995 * 119.99471 * 0.02562 * 17 16 13 38 38 H 1.08000 * 119.99604 * 180.23396 * 18 17 16 39 39 H 1.08007 * 119.99969 * 179.72506 * 19 18 17 40 40 H 1.08000 * 119.99916 * 179.97438 * 20 19 18 41 41 H 1.07997 * 119.99680 * 179.97438 * 21 20 19 42 42 H 1.08992 * 113.61630 * 270.81208 * 22 13 12 43 43 H 1.09003 * 113.61220 * 139.90829 * 22 13 12 44 44 H 1.08003 * 120.00364 * 179.97438 * 23 5 4 45 45 H 1.07997 * 119.99884 * 179.97438 * 24 23 5 46 46 H 1.08003 * 119.99227 * 179.70462 * 25 24 23 47 47 H 1.08001 * 119.99913 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.8872 -2.0902 -1.2982 6 16 1.2441 -3.0186 0.0543 7 8 1.2777 -4.3824 -0.3432 8 8 1.8950 -2.5325 1.2201 9 7 -0.3547 -2.6160 0.2090 10 6 -1.3011 -2.9510 -0.8580 11 1 -0.8078 -3.2383 -1.7865 12 6 -2.4042 -3.9281 -0.4185 13 6 -3.3776 -3.0807 -1.2579 14 6 -3.4834 -3.5353 -2.7149 15 8 -4.4002 -4.6276 -2.8078 16 6 -4.7226 -2.8800 -0.6084 17 6 -5.1405 -3.7351 0.3942 18 6 -6.3721 -3.5480 0.9933 19 6 -7.1904 -2.5124 0.5825 20 6 -6.7748 -1.6605 -0.4237 21 6 -5.5411 -1.8446 -1.0195 22 6 -2.4107 -1.9034 -1.0485 23 6 2.3476 -2.7419 -2.4273 24 6 2.8525 -2.0137 -3.4880 25 6 2.8966 -0.6335 -3.4202 26 6 2.4354 0.0181 -2.2919 27 1 -0.3933 0.4416 -0.7650 28 1 1.7923 -0.5138 0.8900 29 1 1.5878 2.4586 -1.2243 30 1 1.5615 2.4679 1.2085 31 1 -0.6647 -2.1583 1.0062 32 1 -2.2669 -4.9408 -0.7977 33 1 -2.6117 -3.9001 0.6512 34 1 -3.8403 -2.7082 -3.3286 35 1 -2.5026 -3.8533 -3.0685 36 1 -4.5166 -4.9681 -3.7053 37 1 -4.5028 -4.5466 0.7123 38 1 -6.6970 -4.2138 1.7792 39 1 -8.1546 -2.3689 1.0476 40 1 -7.4143 -0.8516 -0.7449 41 1 -5.2166 -1.1793 -1.8059 42 1 -2.6199 -1.3208 -0.1514 43 1 -2.2786 -1.2839 -1.9356 44 1 2.3135 -3.8201 -2.4802 45 1 3.2125 -2.5229 -4.3698 46 1 3.2956 -0.0648 -4.2471 47 1 2.4695 1.0962 -2.2391 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_13270514_2726874.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:26:49 Heat of formation + Delta-G solvation = -57.720026 kcal Electronic energy + Delta-G solvation = -33717.147785 eV Core-core repulsion = 29345.798108 eV Total energy + Delta-G solvation = -4371.349677 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 376.122 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.62358 -40.80462 -39.15485 -38.42268 -37.68509 -37.26863 -36.79941 -34.45841 -32.94378 -32.49828 -31.76037 -31.42166 -28.08892 -27.09199 -26.88115 -24.74054 -24.52152 -23.11801 -22.91881 -22.42913 -20.72646 -19.76033 -19.36888 -18.46877 -18.32114 -18.12665 -18.04539 -17.21474 -16.92329 -16.70667 -16.24866 -16.11558 -16.00270 -15.81166 -15.77337 -15.47478 -15.29955 -15.11891 -14.44341 -14.27820 -14.24077 -14.09230 -13.85614 -13.68819 -13.56611 -13.52413 -13.28653 -13.16345 -13.02458 -12.97626 -12.88467 -12.41321 -12.40671 -12.08699 -12.02100 -11.99929 -11.55797 -11.45213 -11.34366 -10.87086 -10.79051 -10.57153 -10.34903 -10.17160 -9.69990 -9.48869 -5.05888 -0.60725 -0.33295 0.01532 0.56810 0.62176 1.11521 1.43933 1.83476 1.95590 2.27691 2.71923 2.93368 2.98654 3.22464 3.25721 3.29882 3.45309 3.62024 3.65994 3.70907 3.76847 3.81966 3.87585 4.07170 4.08870 4.15905 4.20077 4.23047 4.31177 4.35638 4.42731 4.45524 4.49791 4.59854 4.66598 4.70421 4.72139 4.76285 4.81824 4.90097 4.98945 5.00791 5.05268 5.15453 5.19196 5.23723 5.36923 5.60731 5.68237 5.73843 5.80428 6.04916 6.18967 6.20555 6.65628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.515 6.515 2 C -0.132 4.132 3 Si 0.705 3.295 4 C -0.009 4.009 5 C -0.658 4.658 6 S 2.694 3.306 7 O -0.958 6.958 8 O -0.957 6.957 9 N -1.084 6.084 10 C 0.135 3.865 11 H 0.108 0.892 12 C -0.137 4.137 13 C -0.046 4.046 14 C 0.102 3.898 15 O -0.562 6.562 16 C -0.047 4.047 17 C -0.108 4.108 18 C -0.119 4.119 19 C -0.125 4.125 20 C -0.120 4.120 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.023 4.023 24 C -0.134 4.134 25 C -0.057 4.057 26 C -0.145 4.145 27 H 0.375 0.625 28 H 0.152 0.848 29 H -0.258 1.258 30 H -0.250 1.250 31 H 0.425 0.575 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.380 0.620 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.102 0.898 43 H 0.075 0.925 44 H 0.146 0.854 45 H 0.136 0.864 46 H 0.135 0.865 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.622 3.600 -5.350 6.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.321 6.321 2 C -0.241 4.241 3 Si 0.605 3.395 4 C -0.011 4.011 5 C -0.744 4.744 6 S 2.783 3.217 7 O -0.947 6.947 8 O -0.947 6.947 9 N -0.844 5.844 10 C 0.027 3.973 11 H 0.126 0.874 12 C -0.177 4.177 13 C -0.047 4.047 14 C 0.024 3.976 15 O -0.368 6.368 16 C -0.048 4.048 17 C -0.126 4.126 18 C -0.137 4.137 19 C -0.143 4.143 20 C -0.138 4.138 21 C -0.133 4.133 22 C -0.160 4.160 23 C -0.042 4.042 24 C -0.153 4.153 25 C -0.076 4.076 26 C -0.164 4.164 27 H 0.222 0.778 28 H 0.169 0.831 29 H -0.183 1.183 30 H -0.175 1.175 31 H 0.262 0.738 32 H 0.101 0.899 33 H 0.114 0.886 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.227 0.773 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.120 0.880 43 H 0.094 0.906 44 H 0.163 0.837 45 H 0.154 0.846 46 H 0.153 0.847 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.018 3.555 -3.783 5.291 hybrid contribution -1.113 0.462 -1.642 2.037 sum -0.094 4.018 -5.425 6.752 Atomic orbital electron populations 1.86663 1.16273 1.79859 1.49278 1.25766 0.85059 1.13779 0.99493 0.94286 0.91684 0.73179 0.80323 1.19884 0.93834 0.92058 0.95336 1.30842 1.18080 1.06371 1.19119 1.01932 0.72642 0.73603 0.73548 1.93601 1.86186 1.31276 1.83682 1.93560 1.73570 1.81297 1.46284 1.55260 1.24665 1.75673 1.28784 1.22176 0.88686 0.96481 0.89977 0.87389 1.23621 0.93742 0.99172 1.01127 1.20642 0.91786 0.97813 0.94413 1.21896 0.92524 0.89259 0.93959 1.86536 1.65440 1.50894 1.33886 1.19283 0.94530 0.95127 0.95822 1.21034 0.96391 0.98784 0.96355 1.21162 0.94499 0.98044 0.99971 1.21154 0.99764 0.95701 0.97708 1.21109 0.96320 0.99497 0.96864 1.20877 0.94368 0.98067 0.99983 1.23425 0.93309 0.95845 1.03389 1.21099 0.91541 1.00798 0.90766 1.21407 1.00289 0.94349 0.99238 1.21490 0.94088 0.94816 0.97158 1.21342 1.00618 1.00485 0.93910 0.77759 0.83090 1.18315 1.17476 0.73842 0.89873 0.88569 0.93244 0.93064 0.77302 0.86021 0.86166 0.86277 0.86281 0.86625 0.87953 0.90621 0.83674 0.84620 0.84724 0.84582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.51 0.99 10.57 -35.23 -0.37 0.62 16 2 C -0.13 0.11 2.03 36.01 0.07 0.18 16 3 Si 0.70 -1.19 30.29 -169.99 -5.15 -6.33 16 4 C -0.01 0.01 5.24 -104.63 -0.55 -0.54 16 5 C -0.66 -0.32 5.87 -39.58 -0.23 -0.55 16 6 S 2.69 5.23 5.01 -107.50 -0.54 4.69 16 7 O -0.96 -4.35 16.73 -57.17 -0.96 -5.31 16 8 O -0.96 -4.25 15.56 -57.17 -0.89 -5.14 16 9 N -1.08 0.69 4.03 -4.20 -0.02 0.68 16 10 C 0.13 -0.20 3.99 -67.12 -0.27 -0.46 16 11 H 0.11 -0.24 7.56 -51.93 -0.39 -0.63 16 12 C -0.14 0.04 6.07 -25.83 -0.16 -0.11 16 13 C -0.05 0.03 0.90 -154.76 -0.14 -0.11 16 14 C 0.10 -0.13 6.30 37.16 0.23 0.11 16 15 O -0.56 -0.21 13.13 -35.23 -0.46 -0.67 16 16 C -0.05 -0.06 4.36 -104.62 -0.46 -0.51 16 17 C -0.11 -0.21 9.04 -39.58 -0.36 -0.56 16 18 C -0.12 -0.21 10.05 -39.58 -0.40 -0.61 16 19 C -0.13 -0.20 10.05 -39.58 -0.40 -0.60 16 20 C -0.12 -0.16 10.05 -39.58 -0.40 -0.56 16 21 C -0.11 -0.12 9.47 -39.58 -0.37 -0.50 16 22 C -0.12 0.29 6.86 -25.92 -0.18 0.11 16 23 C -0.02 0.00 9.55 -39.58 -0.38 -0.37 16 24 C -0.13 0.22 10.05 -39.58 -0.40 -0.18 16 25 C -0.06 0.12 10.05 -39.58 -0.40 -0.27 16 26 C -0.15 0.24 8.66 -39.58 -0.34 -0.10 16 27 H 0.37 -1.71 8.70 45.56 0.40 -1.31 16 28 H 0.15 0.08 5.39 -51.93 -0.28 -0.20 16 29 H -0.26 0.23 6.65 56.52 0.38 0.61 16 30 H -0.25 -0.38 7.11 56.52 0.40 0.03 16 31 H 0.42 -0.60 8.44 -34.47 -0.29 -0.89 16 32 H 0.08 0.04 8.10 -51.93 -0.42 -0.38 16 33 H 0.10 -0.03 6.96 -51.93 -0.36 -0.39 16 34 H 0.05 -0.11 8.14 -51.93 -0.42 -0.53 16 35 H 0.05 -0.13 7.34 -51.93 -0.38 -0.51 16 36 H 0.38 -1.37 9.12 45.56 0.42 -0.95 16 37 H 0.12 0.14 6.56 -52.49 -0.34 -0.20 16 38 H 0.12 0.03 8.06 -52.49 -0.42 -0.39 16 39 H 0.12 0.00 8.06 -52.48 -0.42 -0.42 16 40 H 0.12 -0.04 8.06 -52.49 -0.42 -0.46 16 41 H 0.12 -0.06 8.06 -52.49 -0.42 -0.48 16 42 H 0.10 -0.21 8.09 -51.93 -0.42 -0.63 16 43 H 0.08 -0.28 8.10 -51.93 -0.42 -0.70 16 44 H 0.15 -0.11 7.34 -52.48 -0.39 -0.50 16 45 H 0.14 -0.50 8.06 -52.49 -0.42 -0.92 16 46 H 0.13 -0.60 8.06 -52.48 -0.42 -1.02 16 47 H 0.14 -0.43 4.88 -52.49 -0.26 -0.68 16 LS Contribution 390.71 15.07 5.89 5.89 Total: 0.00 -9.86 390.71 -12.93 -22.80 By element: Atomic # 1 Polarization: -6.24 SS G_CDS: -5.32 Total: -11.57 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -5.11 Total: -5.65 kcal Atomic # 7 Polarization: 0.69 SS G_CDS: -0.02 Total: 0.68 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: -2.68 Total: -10.50 kcal Atomic # 14 Polarization: -1.19 SS G_CDS: -5.15 Total: -6.33 kcal Atomic # 16 Polarization: 5.23 SS G_CDS: -0.54 Total: 4.69 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -9.86 -12.93 -22.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_13270514_2726874.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.921 kcal (2) G-P(sol) polarization free energy of solvation -9.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds