Wall clock time and date at job start Mon Mar 8 2021 13:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86299 * 109.46955 * 2 1 4 4 C 1.50701 * 109.47195 * 239.99903 * 2 1 3 5 5 C 1.38210 * 119.99761 * 284.07974 * 4 2 1 6 6 S 1.76196 * 120.00404 * 359.97438 * 5 4 2 7 7 O 1.42100 * 106.40350 * 177.39538 * 6 5 4 8 8 O 1.42096 * 106.40397 * 310.32024 * 6 5 4 9 9 N 1.65602 * 107.21614 * 63.86143 * 6 5 4 10 10 C 1.46504 * 120.00062 * 64.90872 * 9 6 5 11 11 H 1.08997 * 112.85046 * 346.15031 * 10 9 6 12 12 C 1.53777 * 113.61316 * 117.34850 * 10 9 6 13 13 C 1.53950 * 87.01976 * 139.94975 * 12 10 9 14 14 C 1.53001 * 113.53879 * 89.18889 * 13 12 10 15 15 O 1.42901 * 109.47475 * 82.49979 * 14 13 12 16 16 C 1.50699 * 113.74176 * 220.05298 * 13 12 10 17 17 C 1.38237 * 120.00201 * 340.24626 * 16 13 12 18 18 C 1.38237 * 119.99857 * 179.76495 * 17 16 13 19 19 C 1.38233 * 119.99895 * 0.51197 * 18 17 16 20 20 C 1.38238 * 120.00389 * 359.74277 * 19 18 17 21 21 C 1.38234 * 119.99731 * 0.02562 * 20 19 18 22 22 C 1.53775 * 87.11274 * 334.63425 * 13 12 10 23 23 C 1.38261 * 119.99655 * 179.97438 * 5 4 2 24 24 C 1.38217 * 120.00259 * 0.02562 * 23 5 4 25 25 C 1.38257 * 119.99503 * 359.97438 * 24 23 5 26 26 C 1.38212 * 120.00280 * 359.97438 * 25 24 23 27 27 H 0.96689 * 113.99913 * 60.00098 * 1 2 3 28 28 H 1.09006 * 109.47117 * 119.99833 * 2 1 3 29 29 H 1.48504 * 110.00135 * 298.68001 * 3 2 1 30 30 H 1.48497 * 110.00267 * 60.00074 * 3 2 1 31 31 H 0.97004 * 119.99779 * 244.90913 * 9 6 5 32 32 H 1.09000 * 113.61288 * 254.52853 * 12 10 9 33 33 H 1.08999 * 113.61964 * 25.43243 * 12 10 9 34 34 H 1.08996 * 109.47183 * 202.50542 * 14 13 12 35 35 H 1.09002 * 109.46928 * 322.50546 * 14 13 12 36 36 H 0.96695 * 114.00336 * 180.02562 * 15 14 13 37 37 H 1.07995 * 119.99471 * 0.02562 * 17 16 13 38 38 H 1.08000 * 119.99604 * 180.23396 * 18 17 16 39 39 H 1.08007 * 119.99969 * 179.72506 * 19 18 17 40 40 H 1.08000 * 119.99916 * 179.97438 * 20 19 18 41 41 H 1.07997 * 119.99680 * 179.97438 * 21 20 19 42 42 H 1.08992 * 113.61630 * 270.81208 * 22 13 12 43 43 H 1.09003 * 113.61220 * 139.90829 * 22 13 12 44 44 H 1.08003 * 120.00364 * 179.97438 * 23 5 4 45 45 H 1.07997 * 119.99884 * 179.97438 * 24 23 5 46 46 H 1.08003 * 119.99227 * 179.70462 * 25 24 23 47 47 H 1.08001 * 119.99913 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.8872 -2.0902 -1.2982 6 16 1.2441 -3.0186 0.0543 7 8 1.2777 -4.3824 -0.3432 8 8 1.8950 -2.5325 1.2201 9 7 -0.3547 -2.6160 0.2090 10 6 -1.3011 -2.9510 -0.8580 11 1 -0.8078 -3.2383 -1.7865 12 6 -2.4042 -3.9281 -0.4185 13 6 -3.3776 -3.0807 -1.2579 14 6 -3.4834 -3.5353 -2.7149 15 8 -4.4002 -4.6276 -2.8078 16 6 -4.7226 -2.8800 -0.6084 17 6 -5.1405 -3.7351 0.3942 18 6 -6.3721 -3.5480 0.9933 19 6 -7.1904 -2.5124 0.5825 20 6 -6.7748 -1.6605 -0.4237 21 6 -5.5411 -1.8446 -1.0195 22 6 -2.4107 -1.9034 -1.0485 23 6 2.3476 -2.7419 -2.4273 24 6 2.8525 -2.0137 -3.4880 25 6 2.8966 -0.6335 -3.4202 26 6 2.4354 0.0181 -2.2919 27 1 -0.3933 0.4416 -0.7650 28 1 1.7923 -0.5138 0.8900 29 1 1.5878 2.4586 -1.2243 30 1 1.5615 2.4679 1.2085 31 1 -0.6647 -2.1583 1.0062 32 1 -2.2669 -4.9408 -0.7977 33 1 -2.6117 -3.9001 0.6512 34 1 -3.8403 -2.7082 -3.3286 35 1 -2.5026 -3.8533 -3.0685 36 1 -4.5166 -4.9681 -3.7053 37 1 -4.5028 -4.5466 0.7123 38 1 -6.6970 -4.2138 1.7792 39 1 -8.1546 -2.3689 1.0476 40 1 -7.4143 -0.8516 -0.7449 41 1 -5.2166 -1.1793 -1.8059 42 1 -2.6199 -1.3208 -0.1514 43 1 -2.2786 -1.2839 -1.9356 44 1 2.3135 -3.8201 -2.4802 45 1 3.2125 -2.5229 -4.3698 46 1 3.2956 -0.0648 -4.2471 47 1 2.4695 1.0962 -2.2391 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_13270514_2726874.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:26:47 Heat of formation + Delta-G solvation = -59.702132 kcal Electronic energy + Delta-G solvation = -33717.233736 eV Core-core repulsion = 29345.798108 eV Total energy + Delta-G solvation = -4371.435628 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 376.122 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.57863 -40.67826 -39.17760 -38.55769 -37.62847 -37.20626 -37.04362 -34.45549 -32.80876 -32.37694 -31.82036 -31.45456 -28.01546 -26.98475 -26.78558 -24.70779 -24.41557 -23.17113 -22.81403 -22.42649 -20.77720 -19.73074 -19.33250 -18.49700 -18.29214 -18.08310 -17.99790 -17.22751 -16.83084 -16.64730 -16.20490 -16.10167 -15.91959 -15.77404 -15.74736 -15.50567 -15.25705 -15.00591 -14.43141 -14.30235 -14.15266 -14.05452 -13.82132 -13.67829 -13.51591 -13.50773 -13.30523 -13.27222 -13.26510 -12.95727 -12.87204 -12.41137 -12.37101 -12.08994 -11.97129 -11.95929 -11.53028 -11.39874 -11.29582 -10.76840 -10.67318 -10.45046 -10.30802 -10.04124 -9.78576 -9.54469 -4.91758 -0.67829 -0.27423 0.15303 0.50267 0.53393 1.22959 1.53637 1.90799 1.94746 2.38631 2.65276 2.90273 3.09607 3.29319 3.36316 3.37696 3.49753 3.70221 3.73688 3.82014 3.91731 3.93626 4.01653 4.13478 4.17143 4.23514 4.26786 4.29539 4.32110 4.49253 4.52178 4.57606 4.61217 4.62698 4.71363 4.80011 4.82340 4.84641 4.86878 5.02135 5.05623 5.08808 5.16455 5.18369 5.19191 5.32136 5.44480 5.62030 5.65885 5.74260 5.77538 6.09909 6.15389 6.49101 6.91816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.520 6.520 2 C -0.140 4.140 3 Si 0.769 3.231 4 C -0.014 4.014 5 C -0.664 4.664 6 S 2.699 3.301 7 O -0.992 6.992 8 O -0.990 6.990 9 N -1.076 6.076 10 C 0.135 3.865 11 H 0.118 0.882 12 C -0.145 4.145 13 C -0.046 4.046 14 C 0.098 3.902 15 O -0.588 6.588 16 C -0.051 4.051 17 C -0.127 4.127 18 C -0.133 4.133 19 C -0.140 4.140 20 C -0.129 4.129 21 C -0.122 4.122 22 C -0.106 4.106 23 C -0.038 4.038 24 C -0.135 4.135 25 C -0.053 4.053 26 C -0.146 4.146 27 H 0.388 0.612 28 H 0.133 0.867 29 H -0.256 1.256 30 H -0.300 1.300 31 H 0.428 0.572 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.394 0.606 37 H 0.119 0.881 38 H 0.127 0.873 39 H 0.131 0.869 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.143 0.857 45 H 0.157 0.843 46 H 0.164 0.836 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.990 5.323 -7.675 9.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.328 6.328 2 C -0.249 4.249 3 Si 0.672 3.328 4 C -0.016 4.016 5 C -0.754 4.754 6 S 2.792 3.208 7 O -0.982 6.982 8 O -0.980 6.980 9 N -0.837 5.837 10 C 0.028 3.972 11 H 0.136 0.864 12 C -0.185 4.185 13 C -0.047 4.047 14 C 0.021 3.979 15 O -0.396 6.396 16 C -0.051 4.051 17 C -0.145 4.145 18 C -0.151 4.151 19 C -0.158 4.158 20 C -0.147 4.147 21 C -0.140 4.140 22 C -0.145 4.145 23 C -0.057 4.057 24 C -0.154 4.154 25 C -0.071 4.071 26 C -0.164 4.164 27 H 0.238 0.762 28 H 0.151 0.849 29 H -0.181 1.181 30 H -0.227 1.227 31 H 0.266 0.734 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.244 0.756 37 H 0.137 0.863 38 H 0.145 0.855 39 H 0.149 0.851 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.160 0.840 45 H 0.175 0.825 46 H 0.181 0.819 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.372 5.239 -6.112 8.166 hybrid contribution -1.264 -0.084 -0.917 1.564 sum 0.108 5.155 -7.029 8.717 Atomic orbital electron populations 1.86639 1.15755 1.80200 1.50215 1.25850 0.85673 1.14487 0.98883 0.93476 0.90850 0.70898 0.77573 1.19937 0.94206 0.91618 0.95795 1.30465 1.19554 1.06722 1.18630 1.01369 0.72987 0.73084 0.73403 1.93552 1.86804 1.33664 1.84159 1.93515 1.74601 1.81617 1.48269 1.55040 1.23784 1.75555 1.29313 1.22291 0.88429 0.96622 0.89881 0.86417 1.23656 0.94929 0.98955 1.00949 1.20700 0.90889 0.98405 0.94671 1.22018 0.92998 0.89388 0.93518 1.86496 1.65962 1.51597 1.35517 1.19504 0.95342 0.94817 0.95429 1.21192 0.96725 0.99377 0.97240 1.21370 0.94744 0.98568 1.00435 1.21387 1.00365 0.95838 0.98185 1.21399 0.96788 0.99815 0.96707 1.21127 0.94268 0.98230 1.00355 1.23348 0.91583 0.95316 1.04301 1.21230 0.92249 1.01001 0.91234 1.21693 0.99560 0.94845 0.99293 1.21871 0.92843 0.94735 0.97607 1.21565 1.00003 1.01327 0.93554 0.76214 0.84934 1.18103 1.22735 0.73441 0.91147 0.89238 0.91811 0.91829 0.75619 0.86266 0.85465 0.85135 0.84750 0.84831 0.88165 0.88260 0.83957 0.82541 0.81889 0.82872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 2.08 10.57 -148.98 -1.57 0.51 16 2 C -0.14 0.21 2.03 71.24 0.14 0.35 16 3 Si 0.77 -2.95 30.29 68.60 2.08 -0.87 16 4 C -0.01 0.02 5.24 -19.87 -0.10 -0.08 16 5 C -0.66 -0.84 5.87 22.27 0.13 -0.71 16 6 S 2.70 15.06 5.01 -56.49 -0.28 14.78 16 7 O -0.99 -11.15 16.73 -128.00 -2.14 -13.30 16 8 O -0.99 -11.08 15.56 -128.00 -1.99 -13.07 16 9 N -1.08 0.10 4.03 -167.19 -0.67 -0.58 16 10 C 0.14 -0.34 3.99 45.52 0.18 -0.16 16 11 H 0.12 -0.53 7.56 -2.39 -0.02 -0.54 16 12 C -0.15 -0.09 6.07 31.18 0.19 0.10 16 13 C -0.05 0.06 0.90 -52.35 -0.05 0.02 16 14 C 0.10 -0.31 6.30 71.98 0.45 0.14 16 15 O -0.59 -0.52 13.13 -148.98 -1.96 -2.47 16 16 C -0.05 -0.14 4.36 -19.86 -0.09 -0.23 16 17 C -0.13 -0.67 9.04 22.27 0.20 -0.47 16 18 C -0.13 -0.66 10.05 22.27 0.22 -0.43 16 19 C -0.14 -0.53 10.05 22.27 0.22 -0.31 16 20 C -0.13 -0.33 10.05 22.27 0.22 -0.11 16 21 C -0.12 -0.21 9.47 22.27 0.21 0.00 16 22 C -0.11 0.58 6.86 31.12 0.21 0.80 16 23 C -0.04 0.02 9.55 22.27 0.21 0.23 16 24 C -0.14 0.68 10.05 22.27 0.22 0.91 16 25 C -0.05 0.37 10.05 22.27 0.22 0.59 16 26 C -0.15 0.79 8.66 22.27 0.19 0.99 16 27 H 0.39 -4.03 8.70 -74.06 -0.64 -4.68 16 28 H 0.13 0.34 5.39 -2.38 -0.01 0.32 16 29 H -0.26 1.04 6.65 99.48 0.66 1.70 16 30 H -0.30 -1.30 7.11 99.48 0.71 -0.60 16 31 H 0.43 -0.58 8.44 -96.74 -0.82 -1.40 16 32 H 0.07 0.21 8.10 -2.39 -0.02 0.19 16 33 H 0.09 0.14 6.96 -2.39 -0.02 0.13 16 34 H 0.06 -0.39 8.14 -2.39 -0.02 -0.41 16 35 H 0.06 -0.37 7.34 -2.39 -0.02 -0.39 16 36 H 0.39 -2.84 9.12 -74.06 -0.68 -3.51 16 37 H 0.12 0.56 6.56 -2.91 -0.02 0.54 16 38 H 0.13 0.27 8.06 -2.91 -0.02 0.25 16 39 H 0.13 0.06 8.06 -2.91 -0.02 0.03 16 40 H 0.13 -0.18 8.06 -2.91 -0.02 -0.20 16 41 H 0.13 -0.34 8.06 -2.91 -0.02 -0.36 16 42 H 0.10 -0.46 8.09 -2.39 -0.02 -0.48 16 43 H 0.10 -0.97 8.10 -2.39 -0.02 -0.99 16 44 H 0.14 -0.10 7.34 -2.91 -0.02 -0.12 16 45 H 0.16 -1.51 8.06 -2.91 -0.02 -1.54 16 46 H 0.16 -2.08 8.06 -2.91 -0.02 -2.10 16 47 H 0.15 -1.40 4.88 -2.91 -0.01 -1.41 16 Total: 0.00 -24.30 390.71 -4.64 -28.94 By element: Atomic # 1 Polarization: -14.46 SS G_CDS: -1.11 Total: -15.56 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 3.01 Total: 1.62 kcal Atomic # 7 Polarization: 0.10 SS G_CDS: -0.67 Total: -0.58 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -7.66 Total: -28.33 kcal Atomic # 14 Polarization: -2.95 SS G_CDS: 2.08 Total: -0.87 kcal Atomic # 16 Polarization: 15.06 SS G_CDS: -0.28 Total: 14.78 kcal Total: -24.30 -4.64 -28.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_13270514_2726874.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.766 kcal (2) G-P(sol) polarization free energy of solvation -24.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds