Wall clock time and date at job start Mon Mar 8 2021 09:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 O 1.45202 * 109.46867 * 240.00586 * 2 1 3 6 6 C 1.34628 * 117.00407 * 59.99955 * 5 2 1 7 7 O 1.21513 * 120.00136 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00286 * 179.97438 * 6 5 2 9 9 C 1.46494 * 120.00166 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47154 * 179.97438 * 9 8 6 11 11 H 1.09000 * 112.85397 * 314.67489 * 10 9 8 12 12 C 1.53787 * 113.61353 * 85.86685 * 10 9 8 13 13 C 1.53956 * 87.02227 * 139.95232 * 12 10 9 14 14 H 1.08995 * 113.73874 * 220.05752 * 13 12 10 15 15 N 1.46500 * 113.53625 * 89.18907 * 13 12 10 16 16 S 1.65596 * 119.99776 * 117.50529 * 15 13 12 17 17 O 1.42103 * 106.39986 * 178.53929 * 16 15 13 18 18 O 1.42097 * 106.40349 * 311.45855 * 16 15 13 19 19 C 1.76200 * 107.21781 * 65.00179 * 16 15 13 20 20 C 1.38241 * 119.99613 * 269.72252 * 19 16 15 21 21 C 1.38239 * 119.99696 * 179.81246 * 20 19 16 22 22 C 1.38229 * 119.99817 * 0.39727 * 21 20 19 23 23 C 1.50702 * 120.00046 * 179.83488 * 22 21 20 24 24 O 1.42890 * 109.47470 * 245.02345 * 23 22 21 25 25 Si 1.86301 * 109.47014 * 5.02410 * 23 22 21 26 26 C 1.38244 * 120.00302 * 359.85653 * 22 21 20 27 27 C 1.38229 * 120.00232 * 90.00124 * 19 16 15 28 28 C 1.53780 * 87.10898 * 334.63619 * 13 12 10 29 29 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 32 32 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 33 33 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 35 35 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 36 36 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 37 37 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 38 38 H 0.97000 * 119.99457 * 359.97438 * 8 6 5 39 39 H 1.08995 * 109.47699 * 299.99830 * 9 8 6 40 40 H 1.08999 * 109.47206 * 60.00085 * 9 8 6 41 41 H 1.09000 * 113.61086 * 254.53547 * 12 10 9 42 42 H 1.08997 * 113.61225 * 25.43218 * 12 10 9 43 43 H 0.96995 * 119.99798 * 297.50531 * 15 13 12 44 44 H 1.08001 * 119.99937 * 0.02562 * 20 19 16 45 45 H 1.07994 * 119.99910 * 180.23124 * 21 20 19 46 46 H 1.09000 * 109.46864 * 125.02064 * 23 22 21 47 47 H 0.96704 * 114.00653 * 179.97438 * 24 23 22 48 48 H 1.48492 * 110.00342 * 178.68171 * 25 23 22 49 49 H 1.48502 * 109.99935 * 300.00086 * 25 23 22 50 50 H 1.07998 * 119.99784 * 179.97438 * 26 22 21 51 51 H 1.08003 * 120.00169 * 359.97438 * 27 19 16 52 52 H 1.09000 * 113.61667 * 270.81099 * 28 13 12 53 53 H 1.09003 * 113.68715 * 139.91526 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 2.0140 -0.6844 -1.1857 6 6 1.6523 -0.1727 -2.3772 7 8 0.9509 0.8184 -2.4252 8 7 2.0681 -0.7598 -3.5170 9 6 1.6740 -0.2034 -4.8136 10 6 2.2752 -1.0512 -5.9364 11 1 3.3239 -1.2956 -5.7671 12 6 1.4137 -2.2661 -6.3197 13 6 1.7747 -1.9586 -7.7844 14 1 0.9433 -2.0869 -8.4775 15 7 3.0000 -2.6222 -8.2367 16 16 2.9371 -3.7259 -9.4696 17 8 4.2731 -4.1563 -9.6914 18 8 1.8754 -4.6170 -9.1568 19 6 2.4465 -2.8577 -10.9222 20 6 1.1058 -2.7427 -11.2390 21 6 0.7206 -2.0583 -12.3766 22 6 1.6765 -1.4959 -13.2017 23 6 1.2569 -0.7530 -14.4439 24 8 1.7278 -1.4509 -15.5984 25 14 -0.6018 -0.6399 -14.5017 26 6 3.0175 -1.6155 -12.8877 27 6 3.4024 -2.2966 -11.7481 28 6 1.9901 -0.5011 -7.3439 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 -1.7490 1.2492 36 1 3.1301 -0.7209 1.2493 37 1 1.6767 -0.2075 2.1392 38 1 2.6282 -1.5508 -3.4787 39 1 0.5872 -0.2086 -4.8961 40 1 2.0397 0.8201 -4.8960 41 1 1.8126 -3.2148 -5.9606 42 1 0.3548 -2.1388 -6.0951 43 1 3.8481 -2.4151 -7.8139 44 1 0.3591 -3.1847 -10.5959 45 1 -0.3269 -1.9652 -12.6221 46 1 1.6816 0.2508 -14.4277 47 1 1.4932 -1.0288 -16.4362 48 1 -1.0274 0.1182 -15.7056 49 1 -1.1930 -2.0020 -14.5240 50 1 3.7643 -1.1764 -13.5326 51 1 4.4501 -2.3900 -11.5028 52 1 1.0890 0.1097 -7.3998 53 1 2.8533 -0.0258 -7.8099 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_13437856_13421422.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:10:22 Heat of formation + Delta-G solvation = -134.551491 kcal Electronic energy + Delta-G solvation = -35315.887783 eV Core-core repulsion = 30475.163905 eV Total energy + Delta-G solvation = -4840.723878 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 399.164 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.79492 -40.63331 -40.47353 -38.42580 -38.28378 -37.84416 -37.01991 -35.94471 -34.93618 -33.56019 -33.15783 -32.19813 -28.77899 -28.35887 -28.29458 -27.24072 -26.54781 -24.32010 -24.00930 -22.86178 -22.79754 -21.30362 -20.87654 -20.24118 -19.28754 -18.94247 -18.66240 -18.52863 -17.65765 -17.28808 -17.28250 -16.97757 -16.73060 -16.42405 -15.93478 -15.85619 -15.73958 -15.60173 -15.37090 -15.15810 -14.95894 -14.61140 -14.48307 -14.33662 -14.19086 -13.99946 -13.92010 -13.63975 -13.35589 -13.29716 -13.23370 -13.19409 -13.08775 -13.00121 -12.89829 -12.85832 -12.85678 -12.45805 -12.42062 -12.32788 -11.90712 -11.89148 -11.79690 -11.56790 -11.38292 -11.20794 -11.06188 -10.66543 -10.45041 -10.32538 -10.14907 -10.12701 -4.98163 -0.73849 -0.36712 0.20309 1.21322 1.22015 1.56142 1.78760 1.88454 1.91815 2.32024 2.70739 3.16635 3.22779 3.24585 3.55680 3.66158 3.69354 3.75439 3.75692 3.80426 3.81418 3.84021 3.90661 3.95378 4.15431 4.19037 4.28921 4.37429 4.40508 4.51556 4.58384 4.61925 4.62151 4.67680 4.77080 4.78600 4.84878 4.85797 4.88185 4.92853 4.94553 4.94762 4.99265 5.05392 5.11946 5.17191 5.22773 5.27241 5.27825 5.29129 5.39540 5.57191 5.62604 5.70613 6.07755 6.42704 6.49893 7.36976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.179 4.179 4 C -0.138 4.138 5 O -0.372 6.372 6 C 0.640 3.360 7 O -0.596 6.596 8 N -0.700 5.700 9 C 0.147 3.853 10 C -0.119 4.119 11 H 0.109 0.891 12 C -0.150 4.150 13 C 0.118 3.882 14 H 0.115 0.885 15 N -1.085 6.085 16 S 2.715 3.285 17 O -0.989 6.989 18 O -0.981 6.981 19 C -0.677 4.677 20 C -0.023 4.023 21 C -0.143 4.143 22 C -0.027 4.027 23 C -0.095 4.095 24 O -0.557 6.557 25 Si 0.767 3.233 26 C -0.123 4.123 27 C -0.026 4.026 28 C -0.124 4.124 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.416 0.584 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.102 0.898 43 H 0.429 0.571 44 H 0.161 0.839 45 H 0.152 0.848 46 H 0.107 0.893 47 H 0.399 0.601 48 H -0.285 1.285 49 H -0.298 1.298 50 H 0.144 0.856 51 H 0.151 0.849 52 H 0.112 0.888 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.819 5.884 0.767 5.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.237 4.237 4 C -0.195 4.195 5 O -0.286 6.286 6 C 0.393 3.607 7 O -0.487 6.487 8 N -0.360 5.360 9 C 0.025 3.975 10 C -0.138 4.138 11 H 0.128 0.872 12 C -0.190 4.190 13 C 0.010 3.990 14 H 0.133 0.867 15 N -0.846 5.846 16 S 2.805 3.195 17 O -0.979 6.979 18 O -0.971 6.971 19 C -0.765 4.765 20 C -0.042 4.042 21 C -0.161 4.161 22 C -0.027 4.027 23 C -0.203 4.203 24 O -0.368 6.368 25 Si 0.672 3.328 26 C -0.142 4.142 27 C -0.045 4.045 28 C -0.164 4.164 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.116 0.884 38 H 0.252 0.748 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.121 0.879 43 H 0.266 0.734 44 H 0.179 0.821 45 H 0.170 0.830 46 H 0.125 0.875 47 H 0.250 0.750 48 H -0.212 1.212 49 H -0.226 1.226 50 H 0.162 0.838 51 H 0.169 0.831 52 H 0.131 0.869 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.628 4.858 0.805 5.186 hybrid contribution 0.967 0.138 -1.522 1.808 sum -0.661 4.996 -0.717 5.090 Atomic orbital electron populations 1.22471 0.94025 1.02888 1.04291 1.22338 0.94478 0.92485 0.81642 1.22467 1.01591 0.95314 1.04286 1.21891 1.02424 1.01228 0.93971 1.86307 1.71596 1.56667 1.14062 1.18407 0.78866 0.81560 0.81831 1.90904 1.42339 1.28002 1.87437 1.44794 1.55130 1.33028 1.03029 1.21464 0.99980 0.97369 0.78654 1.22860 1.00878 0.96315 0.93710 0.87242 1.23635 1.01385 0.98550 0.95407 1.21842 0.85852 0.94320 0.96957 0.86710 1.55053 1.16633 1.62083 1.50826 1.01081 0.72245 0.73079 0.73047 1.93572 1.37904 1.80405 1.86041 1.93580 1.58082 1.61661 1.83741 1.30864 1.02122 1.20536 1.22977 1.21153 0.94105 0.92768 0.96157 1.21372 1.00164 0.98800 0.95747 1.19880 0.94262 0.94611 0.93996 1.25144 1.12689 0.97787 0.84712 1.86540 1.79008 1.54404 1.16852 0.94141 0.72213 0.79695 0.86760 1.21350 0.96056 0.99658 0.97099 1.21141 0.99625 0.91194 0.92559 1.23330 1.04598 0.95170 0.93313 0.91681 0.92014 0.89529 0.89525 0.91998 0.91703 0.91251 0.91231 0.88361 0.74798 0.91178 0.91499 0.90852 0.87946 0.73354 0.82146 0.83049 0.87530 0.75039 1.21192 1.22591 0.83838 0.83149 0.86922 0.89161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.53 8.37 71.98 0.60 0.07 16 2 C 0.13 0.35 1.13 -10.79 -0.01 0.34 16 3 C -0.18 -0.52 8.37 71.98 0.60 0.09 16 4 C -0.14 0.28 8.85 71.98 0.64 0.92 16 5 O -0.37 -1.93 9.94 -55.38 -0.55 -2.48 16 6 C 0.64 3.73 8.06 129.79 1.05 4.78 16 7 O -0.60 -6.59 11.88 19.80 0.24 -6.36 16 8 N -0.70 0.90 5.56 -590.88 -3.29 -2.39 16 9 C 0.15 -0.67 5.50 86.38 0.47 -0.20 16 10 C -0.12 1.12 3.57 -10.27 -0.04 1.09 16 11 H 0.11 -1.21 8.11 -2.39 -0.02 -1.23 16 12 C -0.15 1.17 7.44 31.18 0.23 1.40 16 13 C 0.12 -1.01 4.44 45.58 0.20 -0.80 16 14 H 0.12 -1.19 7.80 -2.39 -0.02 -1.21 16 15 N -1.08 7.01 5.73 -166.95 -0.96 6.06 16 16 S 2.71 3.19 5.68 -56.49 -0.32 2.87 16 17 O -0.99 -7.69 17.28 -128.00 -2.21 -9.90 16 18 O -0.98 -6.95 17.03 -128.00 -2.18 -9.13 16 19 C -0.68 -0.10 5.95 22.27 0.13 0.04 16 20 C -0.02 0.03 9.27 22.27 0.21 0.24 16 21 C -0.14 0.23 8.67 22.27 0.19 0.42 16 22 C -0.03 0.01 5.38 -19.86 -0.11 -0.09 16 23 C -0.09 0.34 2.79 71.24 0.20 0.54 16 24 O -0.56 0.00 12.81 -148.98 -1.91 -1.90 16 25 Si 0.77 -3.53 29.85 68.60 2.05 -1.49 16 26 C -0.12 0.00 9.69 22.27 0.22 0.21 16 27 C -0.03 -0.01 9.52 22.27 0.21 0.21 16 28 C -0.12 1.40 7.43 31.12 0.23 1.63 16 29 H 0.06 0.52 5.88 -2.39 -0.01 0.51 16 30 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 33 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 34 H 0.06 0.52 5.88 -2.39 -0.01 0.50 16 35 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 36 H 0.07 -0.16 8.14 -2.39 -0.02 -0.17 16 37 H 0.10 -0.52 8.14 -2.39 -0.02 -0.54 16 38 H 0.42 -2.18 8.58 -92.71 -0.80 -2.97 16 39 H 0.07 -0.23 7.88 -2.39 -0.02 -0.25 16 40 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 41 H 0.07 -0.43 8.14 -2.39 -0.02 -0.45 16 42 H 0.10 -0.85 7.92 -2.39 -0.02 -0.87 16 43 H 0.43 -4.24 8.78 -96.75 -0.85 -5.09 16 44 H 0.16 -0.81 7.61 -2.91 -0.02 -0.83 16 45 H 0.15 -0.83 4.87 -2.91 -0.01 -0.85 16 46 H 0.11 -0.89 7.96 -2.39 -0.02 -0.91 16 47 H 0.40 -3.19 8.74 -74.05 -0.65 -3.83 16 48 H -0.28 0.05 7.11 99.48 0.71 0.76 16 49 H -0.30 -0.89 7.05 99.48 0.70 -0.19 16 50 H 0.14 -0.35 8.06 -2.91 -0.02 -0.37 16 51 H 0.15 -0.31 7.62 -2.91 -0.02 -0.33 16 52 H 0.11 -1.45 8.10 -2.39 -0.02 -1.47 16 53 H 0.09 -1.08 8.14 -2.39 -0.02 -1.10 16 Total: 0.00 -29.61 439.56 -5.40 -35.01 By element: Atomic # 1 Polarization: -19.85 SS G_CDS: -1.30 Total: -21.15 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 5.03 Total: 10.87 kcal Atomic # 7 Polarization: 7.91 SS G_CDS: -4.24 Total: 3.67 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -6.62 Total: -29.77 kcal Atomic # 14 Polarization: -3.53 SS G_CDS: 2.05 Total: -1.49 kcal Atomic # 16 Polarization: 3.19 SS G_CDS: -0.32 Total: 2.87 kcal Total: -29.61 -5.40 -35.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_13437856_13421422.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.541 kcal (2) G-P(sol) polarization free energy of solvation -29.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds