Wall clock time and date at job start Mon Mar 8 2021 10:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86305 * 109.47171 * 2 1 4 4 C 1.50696 * 109.47140 * 120.00491 * 2 1 3 5 5 C 1.38230 * 120.00309 * 64.99888 * 4 2 1 6 6 C 1.38235 * 120.00326 * 179.97438 * 5 4 2 7 7 C 1.38234 * 119.99814 * 359.97438 * 6 5 4 8 8 S 1.76199 * 120.00037 * 179.97438 * 7 6 5 9 9 O 1.42106 * 106.40265 * 203.53950 * 8 7 6 10 10 O 1.42097 * 106.40472 * 336.46722 * 8 7 6 11 11 N 1.65608 * 107.21829 * 90.00408 * 8 7 6 12 12 C 1.46505 * 119.99702 * 64.99552 * 11 8 7 13 13 H 1.08999 * 109.47430 * 335.00474 * 12 11 8 14 14 C 1.53001 * 109.46648 * 95.00497 * 12 11 8 15 15 C 1.53003 * 109.46896 * 179.97438 * 14 12 11 16 16 C 1.52998 * 109.47038 * 299.99906 * 15 14 12 17 17 H 1.08999 * 109.47423 * 299.99925 * 16 15 14 18 18 C 1.53005 * 109.47088 * 179.97438 * 16 15 14 19 19 C 1.53004 * 109.46509 * 65.00187 * 18 16 15 20 20 O 1.42898 * 109.46962 * 180.02562 * 19 18 16 21 21 C 1.53001 * 109.47200 * 60.00280 * 16 15 14 22 22 C 1.52998 * 109.46808 * 215.00110 * 12 11 8 23 23 C 1.38240 * 120.00061 * 0.07178 * 7 6 5 24 24 C 1.38234 * 120.00081 * 359.88514 * 23 7 6 25 25 H 0.96700 * 113.99921 * 59.99980 * 1 2 3 26 26 H 1.09009 * 109.47013 * 240.00190 * 2 1 3 27 27 H 1.48496 * 109.99986 * 298.68353 * 3 2 1 28 28 H 1.48500 * 109.99586 * 60.00460 * 3 2 1 29 29 H 1.08000 * 120.00376 * 359.97438 * 5 4 2 30 30 H 1.08000 * 120.00616 * 179.72578 * 6 5 4 31 31 H 0.96994 * 119.99823 * 245.00200 * 11 8 7 32 32 H 1.08997 * 109.47678 * 299.99680 * 14 12 11 33 33 H 1.08999 * 109.47223 * 59.99851 * 14 12 11 34 34 H 1.08995 * 109.47202 * 180.02562 * 15 14 12 35 35 H 1.08999 * 109.46952 * 60.00119 * 15 14 12 36 36 H 1.08997 * 109.47442 * 184.99830 * 18 16 15 37 37 H 1.08999 * 109.47204 * 305.01162 * 18 16 15 38 38 H 1.09003 * 109.47643 * 299.99794 * 19 18 16 39 39 H 1.08997 * 109.47363 * 60.00098 * 19 18 16 40 40 H 0.96700 * 114.00423 * 179.97438 * 20 19 18 41 41 H 1.08994 * 109.47394 * 179.97438 * 21 16 15 42 42 H 1.08999 * 109.47223 * 59.99522 * 21 16 15 43 43 H 1.08999 * 109.47423 * 300.00369 * 22 12 11 44 44 H 1.08995 * 109.47452 * 60.00589 * 22 12 11 45 45 H 1.08005 * 120.00084 * 180.02562 * 23 7 6 46 46 H 1.07999 * 120.00147 * 180.10835 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.6847 -2.0602 1.3982 6 6 2.1460 -2.7121 2.5266 7 6 2.8543 -2.0142 3.4869 8 16 3.4416 -2.8449 4.9255 9 8 3.6093 -1.8480 5.9242 10 8 2.6116 -3.9854 5.0973 11 7 4.9562 -3.4171 4.5771 12 6 6.0498 -2.4796 4.3101 13 1 5.6399 -1.5363 3.9493 14 6 6.8370 -2.2339 5.5989 15 6 7.9796 -1.2554 5.3199 16 6 8.9099 -1.8467 4.2589 17 1 9.3195 -2.7901 4.6199 18 6 10.0522 -0.8678 3.9794 19 6 10.9137 -0.7177 5.2349 20 8 11.9802 0.1969 4.9742 21 6 8.1228 -2.0924 2.9701 22 6 6.9803 -3.0705 3.2489 23 6 3.1001 -0.6642 3.3195 24 6 2.6396 -0.0125 2.1907 25 1 -0.3933 0.4417 -0.7651 26 1 1.7923 -0.5138 -0.8901 27 1 1.5878 2.4586 -1.2242 28 1 1.5615 2.4678 1.2086 29 1 1.1317 -2.6056 0.6478 30 1 1.9495 -3.7657 2.6599 31 1 5.1191 -4.3729 4.5499 32 1 6.1742 -1.8130 6.3549 33 1 7.2470 -3.1773 5.9596 34 1 8.5407 -1.0807 6.2378 35 1 7.5700 -0.3120 4.9589 36 1 10.6647 -1.2480 3.1619 37 1 9.6397 0.1027 3.7038 38 1 10.3013 -0.3376 6.0526 39 1 11.3261 -1.6882 5.5108 40 1 12.5680 0.3410 5.7284 41 1 8.7856 -2.5132 2.2141 42 1 7.7131 -1.1490 2.6091 43 1 7.3902 -4.0138 3.6097 44 1 6.4196 -3.2455 2.3308 45 1 3.6539 -0.1191 4.0696 46 1 2.8331 1.0418 2.0591 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_13461146_13421422.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:45:10 Heat of formation + Delta-G solvation = -148.186053 kcal Electronic energy + Delta-G solvation = -28520.912735 eV Core-core repulsion = 24503.007099 eV Total energy + Delta-G solvation = -4017.905636 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.138 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.65646 -40.18100 -38.42569 -37.87262 -37.82137 -37.03936 -35.82426 -33.19729 -32.24602 -32.22315 -31.64950 -28.09274 -27.25895 -24.35089 -24.08737 -23.37099 -22.85374 -21.74532 -21.03994 -20.43258 -19.15266 -18.67332 -18.52195 -18.24816 -17.57116 -17.06589 -16.83139 -16.34310 -15.99763 -15.84853 -15.43840 -15.34797 -15.05149 -14.94618 -14.70660 -14.60994 -14.34322 -14.24430 -14.01333 -13.95664 -13.55792 -13.33395 -13.24864 -13.00682 -12.95659 -12.89203 -12.87133 -12.45271 -12.21599 -11.97675 -11.91876 -11.88277 -11.86688 -11.47581 -11.23498 -11.05415 -10.79776 -10.68011 -10.40004 -10.30553 -10.15975 -4.99080 -0.75571 -0.39866 0.16866 1.20034 1.55071 1.87024 1.90680 2.29306 2.67402 3.20116 3.22678 3.34472 3.64140 3.70435 3.74388 3.80325 3.80905 3.96332 4.05479 4.15700 4.23555 4.26301 4.27962 4.37191 4.39235 4.47845 4.54108 4.58787 4.62564 4.66778 4.69847 4.72920 4.81631 4.91552 4.94658 4.96270 5.06178 5.16991 5.21390 5.23989 5.28569 5.31845 5.33712 5.42029 5.51826 5.64559 5.67388 6.06652 6.49565 6.90680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.094 4.094 3 Si 0.765 3.235 4 C -0.026 4.026 5 C -0.122 4.122 6 C -0.027 4.027 7 C -0.678 4.678 8 S 2.707 3.293 9 O -0.980 6.980 10 O -0.991 6.991 11 N -1.100 6.100 12 C 0.148 3.852 13 H 0.092 0.908 14 C -0.141 4.141 15 C -0.115 4.115 16 C -0.081 4.081 17 H 0.077 0.923 18 C -0.114 4.114 19 C 0.067 3.933 20 O -0.601 6.601 21 C -0.111 4.111 22 C -0.120 4.120 23 C -0.024 4.024 24 C -0.142 4.142 25 H 0.399 0.601 26 H 0.108 0.892 27 H -0.283 1.283 28 H -0.298 1.298 29 H 0.146 0.854 30 H 0.151 0.849 31 H 0.429 0.571 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.050 0.950 40 H 0.395 0.605 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.158 0.842 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.536 -0.058 -5.055 7.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.203 4.203 3 Si 0.670 3.330 4 C -0.027 4.027 5 C -0.140 4.140 6 C -0.046 4.046 7 C -0.766 4.766 8 S 2.799 3.201 9 O -0.970 6.970 10 O -0.981 6.981 11 N -0.862 5.862 12 C 0.042 3.958 13 H 0.110 0.890 14 C -0.180 4.180 15 C -0.153 4.153 16 C -0.099 4.099 17 H 0.095 0.905 18 C -0.152 4.152 19 C -0.010 4.010 20 O -0.410 6.410 21 C -0.150 4.150 22 C -0.159 4.159 23 C -0.043 4.043 24 C -0.160 4.160 25 H 0.250 0.750 26 H 0.125 0.875 27 H -0.210 1.210 28 H -0.225 1.225 29 H 0.164 0.836 30 H 0.168 0.832 31 H 0.266 0.734 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.245 0.755 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.176 0.824 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.636 0.556 -4.296 6.345 hybrid contribution -1.080 -0.291 -0.459 1.209 sum 3.556 0.266 -4.755 5.944 Atomic orbital electron populations 1.86542 1.18043 1.80808 1.51359 1.25137 0.84501 1.12178 0.98453 0.94148 0.90174 0.71996 0.76715 1.19886 0.93979 0.94244 0.94545 1.21361 0.99753 0.94404 0.98520 1.21150 0.91419 1.00659 0.91348 1.30864 1.16820 1.06736 1.22224 1.01255 0.72510 0.72662 0.73713 1.93572 1.85980 1.61604 1.55804 1.93563 1.67268 1.51194 1.86069 1.55364 1.24256 1.17692 1.88841 1.21030 0.87003 0.91840 0.95930 0.89039 1.22098 0.97711 1.00811 0.97378 1.21651 0.95851 0.98621 0.99226 1.21102 0.94309 0.98493 0.96018 0.90474 1.21549 0.96210 1.00213 0.97214 1.22396 0.88355 0.92183 0.98069 1.86425 1.43810 1.66763 1.43999 1.21547 0.96604 0.99946 0.96869 1.21806 0.96139 0.99575 0.98335 1.21131 0.94576 0.91928 0.96672 1.21373 0.99829 1.00837 0.93981 0.74997 0.87455 1.20972 1.22549 0.83633 0.83167 0.73421 0.91842 0.90729 0.91222 0.91242 0.91781 0.91683 0.92699 0.93133 0.75531 0.90735 0.90957 0.90422 0.90177 0.82417 0.83002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.19 12.81 -148.98 -1.91 -2.10 16 2 C -0.09 0.29 2.79 71.23 0.20 0.48 16 3 Si 0.76 -3.13 29.85 68.60 2.05 -1.08 16 4 C -0.03 -0.01 5.38 -19.87 -0.11 -0.12 16 5 C -0.12 -0.12 9.69 22.27 0.22 0.10 16 6 C -0.03 -0.05 9.52 22.27 0.21 0.17 16 7 C -0.68 -1.41 5.82 22.27 0.13 -1.28 16 8 S 2.71 9.66 5.65 -56.49 -0.32 9.34 16 9 O -0.98 -8.74 16.54 -128.00 -2.12 -10.86 16 10 O -0.99 -9.82 17.28 -128.00 -2.21 -12.04 16 11 N -1.10 3.81 5.47 -169.38 -0.93 2.89 16 12 C 0.15 -0.73 2.65 44.99 0.12 -0.62 16 13 H 0.09 -0.57 7.24 -2.39 -0.02 -0.59 16 14 C -0.14 0.46 5.53 30.60 0.17 0.63 16 15 C -0.12 0.56 4.96 30.59 0.15 0.71 16 16 C -0.08 0.48 2.19 -10.79 -0.02 0.46 16 17 H 0.08 -0.47 8.14 -2.39 -0.02 -0.49 16 18 C -0.11 0.34 5.05 30.60 0.15 0.50 16 19 C 0.07 -0.16 6.80 71.98 0.49 0.33 16 20 O -0.60 -0.76 13.66 -148.98 -2.03 -2.79 16 21 C -0.11 0.82 5.20 30.58 0.16 0.98 16 22 C -0.12 0.93 5.45 30.58 0.17 1.10 16 23 C -0.02 -0.01 8.91 22.27 0.20 0.19 16 24 C -0.14 0.06 8.67 22.27 0.19 0.25 16 25 H 0.40 -3.10 8.74 -74.06 -0.65 -3.75 16 26 H 0.11 -0.85 7.96 -2.38 -0.02 -0.87 16 27 H -0.28 -0.02 7.11 99.48 0.71 0.68 16 28 H -0.30 -1.05 7.05 99.48 0.70 -0.35 16 29 H 0.15 -0.27 8.06 -2.91 -0.02 -0.29 16 30 H 0.15 -0.08 7.61 -2.91 -0.02 -0.11 16 31 H 0.43 -3.02 8.84 -96.75 -0.85 -3.87 16 32 H 0.06 0.04 7.64 -2.39 -0.02 0.02 16 33 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 34 H 0.07 -0.33 6.56 -2.39 -0.02 -0.35 16 35 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 36 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 37 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 38 H 0.05 -0.22 6.57 -2.39 -0.02 -0.23 16 39 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 40 H 0.40 -2.74 9.12 -74.06 -0.68 -3.41 16 41 H 0.07 -0.57 8.14 -2.39 -0.02 -0.59 16 42 H 0.07 -0.56 8.14 -2.39 -0.02 -0.58 16 43 H 0.08 -0.66 8.14 -2.39 -0.02 -0.68 16 44 H 0.08 -0.70 8.14 -2.39 -0.02 -0.72 16 45 H 0.16 -0.44 7.62 -2.91 -0.02 -0.47 16 46 H 0.15 -0.67 4.87 -2.91 -0.01 -0.68 16 Total: 0.00 -25.04 376.28 -6.18 -31.21 By element: Atomic # 1 Polarization: -17.33 SS G_CDS: -1.13 Total: -18.46 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 2.43 Total: 3.88 kcal Atomic # 7 Polarization: 3.81 SS G_CDS: -0.93 Total: 2.89 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -8.27 Total: -27.78 kcal Atomic # 14 Polarization: -3.13 SS G_CDS: 2.05 Total: -1.08 kcal Atomic # 16 Polarization: 9.66 SS G_CDS: -0.32 Total: 9.34 kcal Total: -25.04 -6.18 -31.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_13461146_13421422.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.973 kcal (2) G-P(sol) polarization free energy of solvation -25.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds