Wall clock time and date at job start Mon Mar 8 2021 11:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86305 * 109.47106 * 2 1 4 4 C 1.50700 * 109.47547 * 120.00151 * 2 1 3 5 5 C 1.33386 * 125.19808 * 65.02310 * 4 2 1 6 6 C 1.38427 * 114.91794 * 180.02562 * 5 4 2 7 7 S 1.76197 * 122.54120 * 180.27007 * 6 5 4 8 8 O 1.42106 * 106.40203 * 23.27438 * 7 6 5 9 9 O 1.42103 * 106.40447 * 156.19296 * 7 6 5 10 10 N 1.65595 * 107.22006 * 269.73356 * 7 6 5 11 11 C 1.46507 * 119.99645 * 64.99771 * 10 7 6 12 12 H 1.08999 * 109.47383 * 334.99949 * 11 10 7 13 13 C 1.52998 * 109.47153 * 95.00321 * 11 10 7 14 14 C 1.53004 * 109.47365 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.47039 * 300.00114 * 14 13 11 16 16 H 1.09003 * 109.47520 * 300.00011 * 15 14 13 17 17 C 1.50700 * 109.47083 * 179.97438 * 15 14 13 18 18 N 1.29898 * 124.85093 * 299.69775 * 17 15 14 19 19 C 1.36067 * 108.80290 * 179.83969 * 18 17 15 20 20 C 1.39546 * 133.81205 * 180.11988 * 19 18 17 21 21 C 1.37725 * 119.72642 * 180.32248 * 20 19 18 22 22 C 1.38673 * 120.42068 * 359.97438 * 21 20 19 23 23 C 1.37946 * 120.48136 * 359.97438 * 22 21 20 24 24 C 1.38633 * 119.87037 * 0.02562 * 23 22 21 25 25 O 1.34230 * 124.84874 * 119.99851 * 17 15 14 26 26 C 1.53007 * 109.47528 * 59.99668 * 15 14 13 27 27 C 1.52999 * 109.46932 * 300.00301 * 26 15 14 28 28 C 1.33394 * 114.91995 * 359.97438 * 6 5 4 29 29 S 1.75878 * 109.59471 * 0.02562 * 28 6 5 30 30 H 0.96697 * 113.99587 * 299.99631 * 1 2 3 31 31 H 1.09003 * 109.46814 * 240.00639 * 2 1 3 32 32 H 1.48497 * 109.99931 * 178.68582 * 3 2 1 33 33 H 1.48505 * 109.99917 * 300.00193 * 3 2 1 34 34 H 1.07999 * 122.54538 * 0.02562 * 5 4 2 35 35 H 0.96995 * 120.00448 * 244.99639 * 10 7 6 36 36 H 1.09007 * 109.47365 * 300.00157 * 13 11 10 37 37 H 1.08999 * 109.47280 * 59.99565 * 13 11 10 38 38 H 1.08997 * 109.47291 * 179.97438 * 14 13 11 39 39 H 1.09003 * 109.46660 * 60.00013 * 14 13 11 40 40 H 1.07995 * 120.13476 * 0.29821 * 20 19 18 41 41 H 1.08002 * 119.78177 * 180.02562 * 21 20 19 42 42 H 1.08005 * 119.75816 * 179.97438 * 22 21 20 43 43 H 1.07996 * 120.06456 * 180.02562 * 23 22 21 44 44 H 1.08994 * 109.47291 * 180.02562 * 26 15 14 45 45 H 1.09003 * 109.46440 * 59.99682 * 26 15 14 46 46 H 1.08999 * 109.47132 * 299.99766 * 27 26 15 47 47 H 1.08997 * 109.46991 * 179.97438 * 27 26 15 48 48 H 1.07996 * 125.20162 * 180.02562 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9315 -0.7104 1.2304 5 6 1.7539 -2.0052 1.4970 6 6 2.3059 -2.4359 2.6912 7 16 2.1966 -4.1074 3.2375 8 8 1.9911 -4.8972 2.0742 9 8 3.2822 -4.3091 4.1320 10 7 0.8154 -4.2384 4.1416 11 6 -0.4934 -4.0474 3.5114 12 1 -0.3827 -3.4205 2.6267 13 6 -1.0669 -5.4064 3.1049 14 6 -2.4339 -5.2071 2.4474 15 6 -3.3823 -4.5289 3.4381 16 1 -3.4927 -5.1560 4.3228 17 6 -4.7286 -4.3320 2.7902 18 7 -4.9411 -3.6291 1.7187 19 6 -6.2678 -3.6750 1.4200 20 6 -7.0491 -3.1220 0.4046 21 6 -8.4061 -3.3565 0.3825 22 6 -8.9996 -4.1384 1.3620 23 6 -8.2394 -4.6922 2.3711 24 6 -6.8721 -4.4666 2.4088 25 8 -5.8805 -4.8534 3.2411 26 6 -2.8089 -3.1699 3.8446 27 6 -1.4418 -3.3693 4.5021 28 6 2.9321 -1.4908 3.3940 29 16 2.8413 0.0410 2.5347 30 1 -0.3932 0.4417 0.7651 31 1 1.7923 -0.5138 -0.8901 32 1 3.5346 1.7703 0.0320 33 1 1.5615 2.4679 -1.2085 34 1 1.2200 -2.6675 0.8316 35 1 0.8728 -4.4415 5.0883 36 1 -0.3909 -5.8898 2.3995 37 1 -1.1776 -6.0333 3.9897 38 1 -2.8423 -6.1752 2.1574 39 1 -2.3235 -4.5800 1.5627 40 1 -6.5917 -2.5124 -0.3605 41 1 -9.0116 -2.9293 -0.4032 42 1 -10.0647 -4.3150 1.3345 43 1 -8.7086 -5.3004 3.1303 44 1 -3.4843 -2.6870 4.5507 45 1 -2.6985 -2.5429 2.9598 46 1 -1.5522 -3.9964 5.3868 47 1 -1.0331 -2.4011 4.7913 48 1 3.4203 -1.6430 4.3453 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_13774302_15065232.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:22:30 Heat of formation + Delta-G solvation = -33.278144 kcal Electronic energy + Delta-G solvation = -35988.890401 eV Core-core repulsion = 31230.337038 eV Total energy + Delta-G solvation = -4758.553362 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 421.090 amu Computer time = 3.32 seconds Orbital eigenvalues (eV) -44.21603 -40.24761 -39.51810 -38.90555 -38.19442 -37.58754 -36.84140 -36.19337 -35.18144 -32.00699 -31.86628 -31.66507 -31.48491 -29.30078 -27.26179 -25.15945 -24.96978 -23.95658 -23.91463 -23.05650 -22.27929 -21.46905 -21.07354 -20.09729 -19.24092 -19.02227 -18.48414 -18.22773 -17.96745 -17.76709 -17.63611 -17.38729 -16.89646 -16.39070 -16.06204 -15.59782 -15.42577 -15.41221 -15.31131 -14.97891 -14.96469 -14.65743 -14.43937 -14.34187 -14.26189 -14.09832 -13.97836 -13.43403 -13.41514 -13.32529 -13.22457 -13.13037 -13.01987 -12.92060 -12.66266 -12.50702 -12.47362 -12.42719 -12.25817 -12.24220 -12.13978 -11.83526 -11.64589 -11.48537 -11.34524 -10.71872 -10.59717 -10.23546 -9.90353 -9.78327 -9.40748 -5.29015 -0.76401 -0.50417 -0.28919 0.25140 0.27129 0.53488 0.97287 1.09639 1.44571 1.45740 1.47982 1.79903 2.01522 2.68223 2.70948 2.74740 3.19281 3.33580 3.42290 3.48569 3.52554 3.57412 3.68260 3.77190 3.78836 3.95223 3.98711 4.04992 4.12922 4.17372 4.19559 4.22521 4.25163 4.30451 4.32967 4.34510 4.42702 4.59286 4.62182 4.64934 4.85494 4.86272 4.89827 4.95600 5.00679 5.02788 5.04860 5.07447 5.16997 5.23510 5.32148 5.33931 5.37699 5.66248 5.83721 6.37480 6.67059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.027 4.027 3 Si 0.655 3.345 4 C -0.227 4.227 5 C -0.045 4.045 6 C -0.688 4.688 7 S 2.708 3.292 8 O -0.946 6.946 9 O -0.957 6.957 10 N -1.110 6.110 11 C 0.152 3.848 12 H 0.091 0.909 13 C -0.137 4.137 14 C -0.109 4.109 15 C 0.002 3.998 16 H 0.104 0.896 17 C 0.255 3.745 18 N -0.471 5.471 19 C 0.022 3.978 20 C -0.061 4.061 21 C -0.119 4.119 22 C -0.093 4.093 23 C -0.094 4.094 24 C 0.006 3.994 25 O -0.214 6.214 26 C -0.108 4.108 27 C -0.122 4.122 28 C -0.082 4.082 29 S 0.157 5.843 30 H 0.380 0.620 31 H 0.127 0.873 32 H -0.238 1.238 33 H -0.231 1.231 34 H 0.157 0.843 35 H 0.420 0.580 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.141 0.859 43 H 0.135 0.865 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.077 0.923 47 H 0.080 0.920 48 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.936 3.868 3.836 6.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.336 6.336 2 C -0.140 4.140 3 Si 0.555 3.445 4 C -0.345 4.345 5 C -0.074 4.074 6 C -0.788 4.788 7 S 2.794 3.206 8 O -0.936 6.936 9 O -0.947 6.947 10 N -0.870 5.870 11 C 0.045 3.955 12 H 0.109 0.891 13 C -0.177 4.177 14 C -0.148 4.148 15 C -0.017 4.017 16 H 0.122 0.878 17 C 0.043 3.957 18 N -0.199 5.199 19 C -0.090 4.090 20 C -0.080 4.080 21 C -0.139 4.139 22 C -0.111 4.111 23 C -0.112 4.112 24 C -0.044 4.044 25 O -0.106 6.106 26 C -0.147 4.147 27 C -0.161 4.161 28 C -0.221 4.221 29 S 0.421 5.579 30 H 0.228 0.772 31 H 0.144 0.856 32 H -0.163 1.163 33 H -0.154 1.154 34 H 0.175 0.825 35 H 0.255 0.745 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.155 0.845 41 H 0.156 0.844 42 H 0.159 0.841 43 H 0.153 0.847 44 H 0.093 0.907 45 H 0.103 0.897 46 H 0.095 0.905 47 H 0.098 0.902 48 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -1.791 5.378 2.388 6.151 hybrid contribution -1.180 -1.725 0.402 2.129 sum -2.971 3.653 2.790 5.473 Atomic orbital electron populations 1.86566 1.16321 1.81600 1.49070 1.24453 0.85391 1.09119 0.95076 0.95179 0.82137 0.77313 0.89911 1.25063 1.08634 0.98376 1.02418 1.19637 0.98143 0.94931 0.94698 1.30055 1.15632 1.26498 1.06576 1.01685 0.72264 0.73204 0.73452 1.93616 1.85199 1.65302 1.49458 1.93617 1.51070 1.85013 1.64970 1.55638 1.20326 1.87611 1.23397 1.20897 0.81824 0.96939 0.95879 0.89132 1.22103 0.96257 0.97150 1.02157 1.21580 0.93530 1.01533 0.98118 1.19948 0.83451 0.99670 0.98638 0.87762 1.26426 0.88283 0.90467 0.90539 1.70590 1.14831 1.20711 1.13810 1.19908 0.89601 1.01263 0.98200 1.20374 0.92651 0.98650 0.96344 1.21110 0.94086 0.99166 0.99507 1.21074 1.00217 0.96477 0.93338 1.19929 0.87807 1.02634 1.00866 1.20351 0.91062 1.00816 0.92210 1.84509 1.16016 1.62266 1.47791 1.21572 0.96004 0.94954 1.02166 1.21836 0.94008 1.01852 0.98402 1.25902 0.97916 0.95580 1.02671 1.84356 1.50580 1.10574 1.12381 0.77236 0.85608 1.16252 1.15403 0.82539 0.74473 0.89281 0.90614 0.90664 0.89762 0.84531 0.84368 0.84076 0.84665 0.90655 0.89694 0.90478 0.90169 0.79714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.37 12.88 -35.23 -0.45 -0.08 16 2 C -0.03 0.02 2.96 36.01 0.11 0.13 16 3 Si 0.66 -1.00 30.98 -169.99 -5.27 -6.27 16 4 C -0.23 0.12 5.70 -36.00 -0.21 -0.08 16 5 C -0.05 -0.01 9.16 -41.21 -0.38 -0.39 16 6 C -0.69 0.09 5.72 -41.20 -0.24 -0.15 16 7 S 2.71 1.60 5.71 -107.50 -0.61 0.99 16 8 O -0.95 -3.42 16.89 -57.17 -0.97 -4.38 16 9 O -0.96 -3.21 17.64 -57.17 -1.01 -4.21 16 10 N -1.11 2.97 5.47 -4.89 -0.03 2.94 16 11 C 0.15 -0.42 2.65 -67.93 -0.18 -0.60 16 12 H 0.09 -0.25 7.41 -51.93 -0.38 -0.64 16 13 C -0.14 0.27 5.53 -26.73 -0.15 0.12 16 14 C -0.11 0.15 5.18 -26.73 -0.14 0.01 16 15 C 0.00 0.00 2.66 -91.77 -0.24 -0.25 16 16 H 0.10 -0.29 8.14 -51.93 -0.42 -0.72 16 17 C 0.25 0.52 6.75 -13.10 -0.09 0.44 16 18 N -0.47 -1.74 11.32 -8.70 -0.10 -1.84 16 19 C 0.02 0.08 7.24 -84.71 -0.61 -0.53 16 20 C -0.06 -0.10 10.10 -39.28 -0.40 -0.50 16 21 C -0.12 0.03 10.02 -39.61 -0.40 -0.37 16 22 C -0.09 0.05 10.02 -39.53 -0.40 -0.35 16 23 C -0.09 -0.09 10.06 -39.54 -0.40 -0.49 16 24 C 0.01 0.02 7.43 -38.64 -0.29 -0.27 16 25 O -0.21 -0.71 10.77 3.61 0.04 -0.67 16 26 C -0.11 0.29 5.18 -26.73 -0.14 0.15 16 27 C -0.12 0.50 5.45 -26.73 -0.15 0.35 16 28 C -0.08 0.09 10.70 29.04 0.31 0.40 16 29 S 0.16 -0.25 20.60 -107.50 -2.21 -2.47 16 30 H 0.38 -1.73 8.70 45.56 0.40 -1.34 16 31 H 0.13 -0.07 7.96 -51.93 -0.41 -0.49 16 32 H -0.24 -0.16 7.11 56.52 0.40 0.24 16 33 H -0.23 -0.28 7.11 56.52 0.40 0.12 16 34 H 0.16 0.02 7.96 -52.49 -0.42 -0.40 16 35 H 0.42 -1.94 8.84 -34.47 -0.30 -2.25 16 36 H 0.09 -0.04 7.64 -51.93 -0.40 -0.44 16 37 H 0.08 -0.23 8.14 -51.93 -0.42 -0.65 16 38 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 39 H 0.08 -0.03 8.14 -51.93 -0.42 -0.45 16 40 H 0.14 0.04 8.06 -52.49 -0.42 -0.39 16 41 H 0.14 -0.38 8.06 -52.49 -0.42 -0.81 16 42 H 0.14 -0.45 8.06 -52.48 -0.42 -0.88 16 43 H 0.14 -0.13 8.06 -52.49 -0.42 -0.55 16 44 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16 45 H 0.08 -0.15 8.14 -51.93 -0.42 -0.58 16 46 H 0.08 -0.38 8.14 -51.93 -0.42 -0.80 16 47 H 0.08 -0.38 8.14 -51.93 -0.42 -0.80 16 48 H 0.19 -0.57 8.00 -52.49 -0.42 -0.99 16 LS Contribution 422.86 15.07 6.37 6.37 Total: 0.00 -11.48 422.86 -14.42 -25.90 By element: Atomic # 1 Polarization: -7.70 SS G_CDS: -6.21 Total: -13.91 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -3.97 Total: -2.36 kcal Atomic # 7 Polarization: 1.23 SS G_CDS: -0.13 Total: 1.10 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -2.39 Total: -9.35 kcal Atomic # 14 Polarization: -1.00 SS G_CDS: -5.27 Total: -6.27 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.83 Total: -1.48 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -11.48 -14.42 -25.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_13774302_15065232.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.382 kcal (2) G-P(sol) polarization free energy of solvation -11.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.32 seconds