Wall clock time and date at job start Mon Mar 8 2021 11:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86305 * 109.47106 * 2 1 4 4 C 1.50700 * 109.47547 * 120.00151 * 2 1 3 5 5 C 1.33386 * 125.19808 * 65.02310 * 4 2 1 6 6 C 1.38427 * 114.91794 * 180.02562 * 5 4 2 7 7 S 1.76197 * 122.54120 * 180.27007 * 6 5 4 8 8 O 1.42106 * 106.40203 * 23.27438 * 7 6 5 9 9 O 1.42103 * 106.40447 * 156.19296 * 7 6 5 10 10 N 1.65595 * 107.22006 * 269.73356 * 7 6 5 11 11 C 1.46507 * 119.99645 * 64.99771 * 10 7 6 12 12 H 1.08999 * 109.47383 * 334.99949 * 11 10 7 13 13 C 1.52998 * 109.47153 * 95.00321 * 11 10 7 14 14 C 1.53004 * 109.47365 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.47039 * 300.00114 * 14 13 11 16 16 H 1.09003 * 109.47520 * 300.00011 * 15 14 13 17 17 C 1.50700 * 109.47083 * 179.97438 * 15 14 13 18 18 N 1.29898 * 124.85093 * 299.69775 * 17 15 14 19 19 C 1.36067 * 108.80290 * 179.83969 * 18 17 15 20 20 C 1.39546 * 133.81205 * 180.11988 * 19 18 17 21 21 C 1.37725 * 119.72642 * 180.32248 * 20 19 18 22 22 C 1.38673 * 120.42068 * 359.97438 * 21 20 19 23 23 C 1.37946 * 120.48136 * 359.97438 * 22 21 20 24 24 C 1.38633 * 119.87037 * 0.02562 * 23 22 21 25 25 O 1.34230 * 124.84874 * 119.99851 * 17 15 14 26 26 C 1.53007 * 109.47528 * 59.99668 * 15 14 13 27 27 C 1.52999 * 109.46932 * 300.00301 * 26 15 14 28 28 C 1.33394 * 114.91995 * 359.97438 * 6 5 4 29 29 S 1.75878 * 109.59471 * 0.02562 * 28 6 5 30 30 H 0.96697 * 113.99587 * 299.99631 * 1 2 3 31 31 H 1.09003 * 109.46814 * 240.00639 * 2 1 3 32 32 H 1.48497 * 109.99931 * 178.68582 * 3 2 1 33 33 H 1.48505 * 109.99917 * 300.00193 * 3 2 1 34 34 H 1.07999 * 122.54538 * 0.02562 * 5 4 2 35 35 H 0.96995 * 120.00448 * 244.99639 * 10 7 6 36 36 H 1.09007 * 109.47365 * 300.00157 * 13 11 10 37 37 H 1.08999 * 109.47280 * 59.99565 * 13 11 10 38 38 H 1.08997 * 109.47291 * 179.97438 * 14 13 11 39 39 H 1.09003 * 109.46660 * 60.00013 * 14 13 11 40 40 H 1.07995 * 120.13476 * 0.29821 * 20 19 18 41 41 H 1.08002 * 119.78177 * 180.02562 * 21 20 19 42 42 H 1.08005 * 119.75816 * 179.97438 * 22 21 20 43 43 H 1.07996 * 120.06456 * 180.02562 * 23 22 21 44 44 H 1.08994 * 109.47291 * 180.02562 * 26 15 14 45 45 H 1.09003 * 109.46440 * 59.99682 * 26 15 14 46 46 H 1.08999 * 109.47132 * 299.99766 * 27 26 15 47 47 H 1.08997 * 109.46991 * 179.97438 * 27 26 15 48 48 H 1.07996 * 125.20162 * 180.02562 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9315 -0.7104 1.2304 5 6 1.7539 -2.0052 1.4970 6 6 2.3059 -2.4359 2.6912 7 16 2.1966 -4.1074 3.2375 8 8 1.9911 -4.8972 2.0742 9 8 3.2822 -4.3091 4.1320 10 7 0.8154 -4.2384 4.1416 11 6 -0.4934 -4.0474 3.5114 12 1 -0.3827 -3.4205 2.6267 13 6 -1.0669 -5.4064 3.1049 14 6 -2.4339 -5.2071 2.4474 15 6 -3.3823 -4.5289 3.4381 16 1 -3.4927 -5.1560 4.3228 17 6 -4.7286 -4.3320 2.7902 18 7 -4.9411 -3.6291 1.7187 19 6 -6.2678 -3.6750 1.4200 20 6 -7.0491 -3.1220 0.4046 21 6 -8.4061 -3.3565 0.3825 22 6 -8.9996 -4.1384 1.3620 23 6 -8.2394 -4.6922 2.3711 24 6 -6.8721 -4.4666 2.4088 25 8 -5.8805 -4.8534 3.2411 26 6 -2.8089 -3.1699 3.8446 27 6 -1.4418 -3.3693 4.5021 28 6 2.9321 -1.4908 3.3940 29 16 2.8413 0.0410 2.5347 30 1 -0.3932 0.4417 0.7651 31 1 1.7923 -0.5138 -0.8901 32 1 3.5346 1.7703 0.0320 33 1 1.5615 2.4679 -1.2085 34 1 1.2200 -2.6675 0.8316 35 1 0.8728 -4.4415 5.0883 36 1 -0.3909 -5.8898 2.3995 37 1 -1.1776 -6.0333 3.9897 38 1 -2.8423 -6.1752 2.1574 39 1 -2.3235 -4.5800 1.5627 40 1 -6.5917 -2.5124 -0.3605 41 1 -9.0116 -2.9293 -0.4032 42 1 -10.0647 -4.3150 1.3345 43 1 -8.7086 -5.3004 3.1303 44 1 -3.4843 -2.6870 4.5507 45 1 -2.6985 -2.5429 2.9598 46 1 -1.5522 -3.9964 5.3868 47 1 -1.0331 -2.4011 4.7913 48 1 3.4203 -1.6430 4.3453 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_13774302_15065232.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:22:28 Heat of formation + Delta-G solvation = -37.413011 kcal Electronic energy + Delta-G solvation = -35989.069702 eV Core-core repulsion = 31230.337038 eV Total energy + Delta-G solvation = -4758.732664 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 421.090 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -44.32203 -40.11444 -39.46586 -38.92599 -38.34598 -37.52677 -37.00572 -36.20287 -35.18953 -31.84734 -31.79735 -31.69500 -31.45374 -29.26689 -27.20508 -25.14358 -24.93717 -24.00654 -23.74125 -23.10633 -22.25437 -21.43526 -20.96767 -20.07917 -19.17469 -19.05496 -18.50062 -18.30368 -17.91436 -17.78319 -17.70933 -17.32476 -16.85561 -16.34958 -16.07895 -15.53550 -15.40112 -15.32633 -15.20406 -14.98333 -14.92612 -14.67811 -14.35718 -14.28554 -14.18612 -14.03808 -13.95346 -13.51355 -13.37752 -13.30256 -13.25106 -13.17179 -13.14971 -12.93610 -12.61823 -12.55229 -12.52485 -12.34725 -12.21542 -12.08679 -12.05664 -11.74986 -11.58505 -11.47464 -11.30565 -10.65512 -10.45935 -10.16970 -9.84737 -9.81794 -9.47989 -5.21149 -0.76940 -0.45506 -0.34560 0.18173 0.34928 0.59391 0.98746 1.16450 1.35378 1.40674 1.53144 1.84005 2.06072 2.62360 2.68748 2.72885 3.21805 3.43003 3.45175 3.60151 3.64153 3.66570 3.74167 3.89555 3.91919 4.04885 4.11484 4.17368 4.19468 4.25301 4.25852 4.29173 4.37059 4.37905 4.39753 4.44584 4.53100 4.65174 4.78197 4.81572 4.90252 4.91497 5.02255 5.04588 5.07702 5.09349 5.16518 5.20829 5.23861 5.31793 5.34400 5.36250 5.48076 5.68850 6.11467 6.54729 6.65470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.033 4.033 3 Si 0.735 3.265 4 C -0.235 4.235 5 C -0.058 4.058 6 C -0.695 4.695 7 S 2.723 3.277 8 O -0.983 6.983 9 O -0.985 6.985 10 N -1.095 6.095 11 C 0.149 3.851 12 H 0.087 0.913 13 C -0.136 4.136 14 C -0.103 4.103 15 C 0.005 3.995 16 H 0.123 0.877 17 C 0.252 3.748 18 N -0.496 5.496 19 C -0.008 4.008 20 C -0.081 4.081 21 C -0.113 4.113 22 C -0.088 4.088 23 C -0.103 4.103 24 C -0.022 4.022 25 O -0.226 6.226 26 C -0.103 4.103 27 C -0.113 4.113 28 C -0.083 4.083 29 S 0.191 5.809 30 H 0.396 0.604 31 H 0.118 0.882 32 H -0.265 1.265 33 H -0.270 1.270 34 H 0.149 0.851 35 H 0.432 0.568 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.142 0.858 41 H 0.167 0.833 42 H 0.174 0.826 43 H 0.152 0.848 44 H 0.079 0.921 45 H 0.073 0.927 46 H 0.094 0.906 47 H 0.094 0.906 48 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.891 4.641 5.306 8.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.146 4.146 3 Si 0.637 3.363 4 C -0.353 4.353 5 C -0.087 4.087 6 C -0.795 4.795 7 S 2.811 3.189 8 O -0.973 6.973 9 O -0.975 6.975 10 N -0.857 5.857 11 C 0.042 3.958 12 H 0.106 0.894 13 C -0.175 4.175 14 C -0.142 4.142 15 C -0.015 4.015 16 H 0.141 0.859 17 C 0.041 3.959 18 N -0.226 5.226 19 C -0.119 4.119 20 C -0.100 4.100 21 C -0.132 4.132 22 C -0.105 4.105 23 C -0.122 4.122 24 C -0.071 4.071 25 O -0.118 6.118 26 C -0.142 4.142 27 C -0.152 4.152 28 C -0.222 4.222 29 S 0.455 5.545 30 H 0.247 0.753 31 H 0.136 0.864 32 H -0.191 1.191 33 H -0.196 1.196 34 H 0.166 0.834 35 H 0.270 0.730 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.159 0.841 41 H 0.185 0.815 42 H 0.192 0.808 43 H 0.170 0.830 44 H 0.098 0.902 45 H 0.091 0.909 46 H 0.113 0.887 47 H 0.112 0.888 48 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -2.761 6.124 3.890 7.763 hybrid contribution -0.961 -1.925 -0.135 2.155 sum -3.721 4.200 3.754 6.752 Atomic orbital electron populations 1.86531 1.16404 1.82078 1.50324 1.24574 0.85507 1.09700 0.94802 0.94291 0.79232 0.74937 0.87841 1.25158 1.08766 0.98375 1.02954 1.19658 0.98723 0.95297 0.95001 1.29821 1.16802 1.26033 1.06880 1.00892 0.72214 0.73140 0.72623 1.93572 1.85769 1.66865 1.51055 1.93571 1.52754 1.85698 1.65516 1.55282 1.19296 1.87390 1.23766 1.20968 0.81791 0.96590 0.96445 0.89448 1.22079 0.95272 0.97858 1.02282 1.21490 0.94035 1.00879 0.97808 1.20151 0.81713 1.00784 0.98809 0.85901 1.27090 0.88938 0.89666 0.90224 1.70560 1.15285 1.21886 1.14826 1.20310 0.89923 1.02370 0.99308 1.20652 0.93646 0.99302 0.96375 1.21507 0.93452 0.98275 0.99956 1.21522 1.01638 0.95145 0.92224 1.20325 0.87057 1.02946 1.01833 1.20791 0.92007 1.01742 0.92583 1.84484 1.16463 1.62688 1.48204 1.21534 0.96840 0.93916 1.01880 1.21804 0.92422 1.02782 0.98197 1.26229 0.97114 0.95571 1.03277 1.84229 1.49494 1.09643 1.11139 0.75337 0.86436 1.19063 1.19582 0.83353 0.73005 0.91083 0.88999 0.91311 0.91311 0.84051 0.81548 0.80848 0.83025 0.90239 0.90876 0.88713 0.88765 0.77788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.40 12.88 -148.98 -1.92 -1.52 16 2 C -0.03 0.04 2.96 71.24 0.21 0.25 16 3 Si 0.73 -2.05 30.98 68.60 2.13 0.07 16 4 C -0.23 0.18 5.70 24.59 0.14 0.32 16 5 C -0.06 -0.08 9.16 21.22 0.19 0.12 16 6 C -0.69 -0.09 5.72 21.22 0.12 0.03 16 7 S 2.72 5.54 5.71 -56.49 -0.32 5.22 16 8 O -0.98 -8.96 16.89 -128.00 -2.16 -11.12 16 9 O -0.99 -7.11 17.64 -128.00 -2.26 -9.37 16 10 N -1.10 5.96 5.47 -169.37 -0.93 5.03 16 11 C 0.15 -0.80 2.65 44.99 0.12 -0.68 16 12 H 0.09 -0.39 7.41 -2.39 -0.02 -0.41 16 13 C -0.14 0.43 5.53 30.59 0.17 0.60 16 14 C -0.10 0.12 5.18 30.59 0.16 0.28 16 15 C 0.00 -0.01 2.66 -11.54 -0.03 -0.04 16 16 H 0.12 -0.74 8.14 -2.39 -0.02 -0.76 16 17 C 0.25 1.46 6.75 88.39 0.60 2.05 16 18 N -0.50 -4.78 11.32 -296.28 -3.35 -8.13 16 19 C -0.01 -0.08 7.24 39.31 0.28 0.21 16 20 C -0.08 -0.35 10.10 22.46 0.23 -0.12 16 21 C -0.11 0.13 10.02 22.25 0.22 0.36 16 22 C -0.09 0.19 10.02 22.30 0.22 0.41 16 23 C -0.10 -0.21 10.06 22.29 0.22 0.01 16 24 C -0.02 -0.17 7.43 22.88 0.17 0.00 16 25 O -0.23 -1.86 10.77 -10.01 -0.11 -1.97 16 26 C -0.10 0.54 5.18 30.60 0.16 0.70 16 27 C -0.11 1.05 5.45 30.59 0.17 1.21 16 28 C -0.08 0.25 10.70 66.72 0.71 0.96 16 29 S 0.19 -0.77 20.60 -56.49 -1.16 -1.93 16 30 H 0.40 -3.58 8.70 -74.06 -0.64 -4.22 16 31 H 0.12 0.02 7.96 -2.39 -0.02 0.01 16 32 H -0.26 -0.41 7.11 99.48 0.71 0.30 16 33 H -0.27 -0.98 7.11 99.48 0.71 -0.27 16 34 H 0.15 0.36 7.96 -2.91 -0.02 0.34 16 35 H 0.43 -4.38 8.84 -96.75 -0.85 -5.24 16 36 H 0.07 0.07 7.64 -2.38 -0.02 0.05 16 37 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 38 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 39 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 40 H 0.14 0.28 8.06 -2.91 -0.02 0.26 16 41 H 0.17 -1.24 8.06 -2.91 -0.02 -1.26 16 42 H 0.17 -1.57 8.06 -2.91 -0.02 -1.59 16 43 H 0.15 -0.34 8.06 -2.91 -0.02 -0.37 16 44 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 45 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 46 H 0.09 -1.15 8.14 -2.39 -0.02 -1.17 16 47 H 0.09 -1.06 8.14 -2.39 -0.02 -1.08 16 48 H 0.21 -1.52 8.00 -2.91 -0.02 -1.54 16 Total: 0.00 -28.76 422.86 -6.45 -35.21 By element: Atomic # 1 Polarization: -17.72 SS G_CDS: -0.44 Total: -18.16 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 4.07 Total: 6.66 kcal Atomic # 7 Polarization: 1.18 SS G_CDS: -4.28 Total: -3.10 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -6.45 Total: -23.97 kcal Atomic # 14 Polarization: -2.05 SS G_CDS: 2.13 Total: 0.07 kcal Atomic # 16 Polarization: 4.78 SS G_CDS: -1.49 Total: 3.29 kcal Total: -28.76 -6.45 -35.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_13774302_15065232.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.203 kcal (2) G-P(sol) polarization free energy of solvation -28.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds