Wall clock time and date at job start Mon Mar 8 2021 12:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86297 * 109.47015 * 2 1 4 4 C 1.50702 * 109.47175 * 119.99836 * 2 1 3 5 5 C 1.33392 * 122.53798 * 75.00162 * 4 2 1 6 6 S 1.76202 * 125.20396 * 0.02562 * 5 4 2 7 7 O 1.42101 * 106.39609 * 66.18255 * 6 5 4 8 8 O 1.42098 * 106.40510 * 293.26406 * 6 5 4 9 9 N 1.65601 * 107.21792 * 179.71895 * 6 5 4 10 10 C 1.46497 * 119.99681 * 65.00177 * 9 6 5 11 11 C 1.53000 * 109.46802 * 164.99839 * 10 9 6 12 12 C 1.53003 * 109.46943 * 180.02562 * 11 10 9 13 13 H 1.09002 * 112.85017 * 45.33263 * 12 11 10 14 14 C 1.53786 * 113.61503 * 176.52881 * 12 11 10 15 15 C 1.53783 * 87.08050 * 140.06140 * 14 12 11 16 16 H 1.08993 * 113.61424 * 220.01734 * 15 14 12 17 17 F 1.39899 * 113.61053 * 89.11871 * 15 14 12 18 18 C 1.53781 * 113.61337 * 274.13674 * 12 11 10 19 19 S 1.75885 * 109.59125 * 179.75368 * 5 4 2 20 20 C 1.75882 * 90.97116 * 0.22568 * 19 5 4 21 21 C 1.33386 * 109.59549 * 0.02562 * 20 19 5 22 22 H 0.96695 * 113.99882 * 299.99917 * 1 2 3 23 23 H 1.08996 * 109.47209 * 239.99992 * 2 1 3 24 24 H 1.48504 * 110.00133 * 299.99702 * 3 2 1 25 25 H 1.48497 * 110.00134 * 61.31859 * 3 2 1 26 26 H 0.96991 * 120.00069 * 245.00378 * 9 6 5 27 27 H 1.09007 * 109.47390 * 45.00019 * 10 9 6 28 28 H 1.08994 * 109.47414 * 285.00107 * 10 9 6 29 29 H 1.08997 * 109.47222 * 60.00499 * 11 10 9 30 30 H 1.09004 * 109.47285 * 299.99755 * 11 10 9 31 31 H 1.08992 * 113.61675 * 254.61398 * 14 12 11 32 32 H 1.09005 * 113.61030 * 25.43048 * 14 12 11 33 33 H 1.08999 * 113.61567 * 334.48261 * 18 12 11 34 34 H 1.08998 * 113.61196 * 105.38615 * 18 12 11 35 35 H 1.07997 * 125.20253 * 179.97438 * 20 19 5 36 36 H 1.08000 * 122.53849 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.8962 -2.0378 1.3572 6 16 1.2764 -3.1577 0.1463 7 8 2.1525 -3.0678 -0.9689 8 8 -0.1217 -2.9195 0.0576 9 7 1.4525 -4.6869 0.7571 10 6 0.6993 -5.0916 1.9467 11 6 0.7424 -6.6148 2.0837 12 6 -0.0448 -7.0376 3.3257 13 1 -1.0057 -6.5302 3.4109 14 6 -0.1348 -8.5619 3.5087 15 6 0.0691 -8.3144 5.0127 16 1 0.7230 -9.0438 5.4906 17 9 -1.1242 -8.1111 5.7140 18 6 0.7846 -7.0077 4.6204 19 16 2.5702 -2.4996 2.9148 20 6 2.8644 -0.8138 3.3209 21 6 2.4607 -0.0346 2.3164 22 1 -0.3933 0.4417 0.7650 23 1 1.7924 -0.5138 -0.8899 24 1 1.5615 2.4679 -1.2086 25 1 1.5879 2.4585 1.2242 26 1 2.0543 -5.3145 0.3274 27 1 -0.3361 -4.7647 1.8499 28 1 1.1434 -4.6345 2.8309 29 1 1.7777 -6.9418 2.1806 30 1 0.2982 -7.0719 1.1994 31 1 -1.1133 -8.9742 3.2628 32 1 0.6843 -9.1071 3.0396 33 1 1.8553 -7.1286 4.4559 34 1 0.5476 -6.1661 5.2712 35 1 3.3040 -0.4632 4.2430 36 1 2.5443 1.0417 2.3464 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_14412254_13652106.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:46:10 Heat of formation + Delta-G solvation = -91.641540 kcal Electronic energy + Delta-G solvation = -23269.670287 eV Core-core repulsion = 19503.672306 eV Total energy + Delta-G solvation = -3765.997981 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.054 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.63798 -40.12461 -39.69749 -38.12375 -37.20096 -36.79984 -36.66467 -31.54711 -31.37452 -28.06160 -27.03638 -25.79837 -24.41894 -23.14776 -21.64821 -20.70519 -19.91210 -19.73074 -18.60593 -18.05144 -17.46496 -17.20373 -16.81051 -16.74349 -16.40762 -16.28405 -15.93958 -15.86528 -15.65433 -15.32818 -14.86154 -14.28216 -14.18845 -14.05399 -13.82465 -13.60828 -13.46380 -13.22051 -13.02634 -12.92904 -12.66650 -12.63224 -12.58618 -12.26434 -12.09794 -11.99083 -11.62847 -11.37442 -11.14001 -10.79581 -10.72129 -10.47365 -9.73236 -5.04490 -0.71300 -0.68177 0.16298 0.52713 1.12491 1.16843 1.49161 1.87938 1.91136 2.62930 3.10943 3.16133 3.23630 3.39536 3.40550 3.49797 3.64784 3.68936 3.81474 3.87968 3.99416 4.01637 4.20692 4.28365 4.35562 4.39249 4.48536 4.58344 4.60475 4.66016 4.77039 4.79402 4.83723 4.93509 4.97226 5.02453 5.32379 5.76780 6.32315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.508 6.508 2 C -0.106 4.106 3 Si 0.711 3.289 4 C 0.007 3.993 5 C -0.765 4.765 6 S 2.715 3.285 7 O -0.948 6.948 8 O -0.926 6.926 9 N -1.120 6.120 10 C 0.111 3.889 11 C -0.115 4.115 12 C -0.111 4.111 13 H 0.100 0.900 14 C -0.157 4.157 15 C 0.061 3.939 16 H 0.097 0.903 17 F -0.197 7.197 18 C -0.161 4.161 19 S 0.205 5.795 20 C -0.164 4.164 21 C -0.163 4.163 22 H 0.379 0.621 23 H 0.127 0.873 24 H -0.248 1.248 25 H -0.253 1.253 26 H 0.422 0.578 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.179 0.821 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.197 -1.184 4.385 6.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.314 6.314 2 C -0.217 4.217 3 Si 0.610 3.390 4 C -0.010 4.010 5 C -0.965 4.965 6 S 2.799 3.201 7 O -0.938 6.938 8 O -0.916 6.916 9 N -0.882 5.882 10 C -0.015 4.015 11 C -0.154 4.154 12 C -0.130 4.130 13 H 0.119 0.881 14 C -0.195 4.195 15 C 0.025 3.975 16 H 0.114 0.886 17 F -0.178 7.178 18 C -0.199 4.199 19 S 0.471 5.529 20 C -0.301 4.301 21 C -0.193 4.193 22 H 0.226 0.774 23 H 0.145 0.855 24 H -0.172 1.172 25 H -0.178 1.178 26 H 0.258 0.742 27 H 0.104 0.896 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.196 0.804 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.831 -1.671 3.950 6.460 hybrid contribution -0.674 1.068 0.560 1.382 sum 4.157 -0.602 4.510 6.163 Atomic orbital electron populations 1.86788 1.15605 1.79982 1.49033 1.25356 0.85570 1.13514 0.97279 0.94593 0.91077 0.72489 0.80887 1.18974 0.94147 0.91316 0.96589 1.35763 1.25825 1.14454 1.20478 1.01605 0.74314 0.71764 0.72411 1.93629 1.67557 1.85737 1.46890 1.93658 1.29376 1.83990 1.84581 1.55599 1.58786 1.31056 1.42752 1.21488 0.96807 0.97234 0.85967 1.21752 1.01318 0.93635 0.98686 1.22580 0.99906 0.96484 0.94028 0.88136 1.23607 1.04238 0.96758 0.94898 1.22428 0.83454 0.99268 0.92371 0.88561 1.92830 1.48499 1.96144 1.80294 1.23751 1.00449 0.97955 0.97709 1.84042 1.55977 1.06115 1.06770 1.26164 1.03554 0.96865 1.03508 1.20334 1.03551 1.02091 0.93340 0.77360 0.85484 1.17200 1.17777 0.74242 0.89564 0.91661 0.90499 0.90168 0.89916 0.88094 0.88089 0.89964 0.80391 0.82622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.51 -1.54 12.32 -35.88 -0.44 -1.98 16 2 C -0.11 -0.17 2.33 36.01 0.08 -0.08 16 3 Si 0.71 -0.59 30.47 -169.99 -5.18 -5.76 16 4 C 0.01 0.01 5.13 -106.25 -0.55 -0.54 16 5 C -0.77 -1.07 6.46 29.04 0.19 -0.88 16 6 S 2.72 7.41 5.07 -107.50 -0.55 6.86 16 7 O -0.95 -4.90 17.48 -57.17 -1.00 -5.90 16 8 O -0.93 -5.40 16.93 -59.41 -1.01 -6.41 16 9 N -1.12 1.17 5.81 -10.61 -0.06 1.11 16 10 C 0.11 -0.22 5.97 -4.04 -0.02 -0.25 16 11 C -0.12 0.39 5.18 -26.73 -0.14 0.25 16 12 C -0.11 0.30 3.61 -89.80 -0.32 -0.03 16 13 H 0.10 -0.19 8.14 -51.93 -0.42 -0.61 16 14 C -0.16 0.41 7.54 -25.92 -0.20 0.22 16 15 C 0.06 -0.10 5.70 -25.77 -0.15 -0.24 16 16 H 0.10 -0.29 8.14 -51.93 -0.42 -0.71 16 17 F -0.20 -0.38 17.38 2.25 0.04 -0.34 16 18 C -0.16 0.48 7.55 -25.78 -0.19 0.29 16 19 S 0.20 -0.28 21.09 -107.50 -2.27 -2.55 16 20 C -0.16 0.33 11.23 29.04 0.33 0.65 16 21 C -0.16 0.16 8.74 -41.21 -0.36 -0.20 16 22 H 0.38 -0.23 8.70 45.56 0.40 0.17 16 23 H 0.13 0.26 7.23 -51.93 -0.38 -0.11 16 24 H -0.25 -0.54 7.11 56.52 0.40 -0.14 16 25 H -0.25 0.05 6.80 56.52 0.38 0.43 16 26 H 0.42 -1.32 8.65 -34.47 -0.30 -1.62 16 27 H 0.09 -0.10 7.75 -51.93 -0.40 -0.50 16 28 H 0.07 -0.21 6.25 -51.93 -0.32 -0.53 16 29 H 0.08 -0.36 7.88 -51.93 -0.41 -0.77 16 30 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 31 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 32 H 0.10 -0.41 8.10 -51.93 -0.42 -0.83 16 33 H 0.10 -0.46 7.92 -51.93 -0.41 -0.87 16 34 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 35 H 0.18 -0.85 8.06 -52.49 -0.42 -1.28 16 36 H 0.16 -0.44 5.54 -52.49 -0.29 -0.73 16 LS Contribution 326.66 15.07 4.92 4.92 Total: 0.00 -9.68 326.66 -11.16 -20.84 By element: Atomic # 1 Polarization: -5.70 SS G_CDS: -4.29 Total: -9.99 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -1.33 Total: -0.81 kcal Atomic # 7 Polarization: 1.17 SS G_CDS: -0.06 Total: 1.11 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -2.45 Total: -14.28 kcal Atomic # 9 Polarization: -0.38 SS G_CDS: 0.04 Total: -0.34 kcal Atomic # 14 Polarization: -0.59 SS G_CDS: -5.18 Total: -5.76 kcal Atomic # 16 Polarization: 7.13 SS G_CDS: -2.81 Total: 4.31 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -9.68 -11.16 -20.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14412254_13652106.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.802 kcal (2) G-P(sol) polarization free energy of solvation -9.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds