Wall clock time and date at job start Mon Mar 8 2021 11:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34231 * 117.00006 * 2 1 4 4 O 1.20826 * 119.99907 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99867 * 179.72436 * 3 2 1 6 6 H 1.09006 * 109.46897 * 60.28133 * 5 3 2 7 7 C 1.53008 * 109.46801 * 180.27742 * 5 3 2 8 8 C 1.52999 * 109.46865 * 180.02562 * 7 5 3 9 9 C 1.53004 * 109.46888 * 300.00021 * 8 7 5 10 10 H 1.09000 * 109.46838 * 179.97438 * 9 8 7 11 11 N 1.46492 * 109.47178 * 300.00092 * 9 8 7 12 12 S 1.65606 * 120.00189 * 217.43774 * 11 9 8 13 13 O 1.42097 * 106.40522 * 180.26287 * 12 11 9 14 14 O 1.42104 * 106.40047 * 313.18594 * 12 11 9 15 15 C 1.76205 * 107.21637 * 66.72094 * 12 11 9 16 16 C 1.33385 * 122.53642 * 166.38256 * 15 12 11 17 17 C 1.50698 * 125.20356 * 0.02917 * 16 15 12 18 18 O 1.42898 * 109.47561 * 39.71835 * 17 16 15 19 19 Si 1.86306 * 109.47172 * 159.71866 * 17 16 15 20 20 S 1.75887 * 109.59221 * 180.02562 * 16 15 12 21 21 C 1.75876 * 90.97109 * 359.97438 * 20 16 15 22 22 C 1.33395 * 109.59167 * 359.73304 * 21 20 16 23 23 C 1.52999 * 109.47430 * 60.00436 * 9 8 7 24 24 C 1.52990 * 109.47163 * 300.28007 * 5 3 2 25 25 H 1.09003 * 109.46824 * 59.99443 * 1 2 3 26 26 H 1.08999 * 109.46949 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46438 * 299.99822 * 1 2 3 28 28 H 1.09001 * 109.46943 * 300.00176 * 7 5 3 29 29 H 1.08997 * 109.47175 * 60.00285 * 7 5 3 30 30 H 1.08997 * 109.47321 * 59.99970 * 8 7 5 31 31 H 1.08999 * 109.47253 * 179.97438 * 8 7 5 32 32 H 0.96997 * 120.00398 * 37.44103 * 11 9 8 33 33 H 1.09003 * 109.47311 * 279.71418 * 17 16 15 34 34 H 0.96702 * 113.99958 * 66.23207 * 18 17 16 35 35 H 1.48501 * 110.00250 * 179.97438 * 19 17 16 36 36 H 1.48507 * 109.99682 * 301.31825 * 19 17 16 37 37 H 1.07996 * 125.20482 * 179.97438 * 21 20 16 38 38 H 1.08007 * 122.53988 * 180.23519 * 22 21 20 39 39 H 1.09006 * 109.47167 * 59.99537 * 23 9 8 40 40 H 1.08996 * 109.47669 * 179.97438 * 23 9 8 41 41 H 1.08998 * 109.46966 * 299.99345 * 24 5 3 42 42 H 1.08994 * 109.47751 * 60.00336 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 0.0063 6 1 3.9597 0.7831 -0.8835 7 6 4.0001 2.7422 0.0119 8 6 5.5280 2.8222 0.0176 9 6 6.0705 2.1251 1.2670 10 1 7.1590 2.1818 1.2708 11 7 5.5424 2.7859 2.4630 12 16 6.5018 2.9674 3.8006 13 8 5.7089 3.6295 4.7763 14 8 7.1193 1.7074 4.0255 15 6 7.7939 4.0845 3.3679 16 6 8.5851 4.6536 4.2786 17 6 8.4957 4.4330 5.7666 18 8 8.2210 3.0553 6.0283 19 14 10.1123 4.9060 6.5628 20 16 9.7488 5.7009 3.4769 21 6 9.0760 5.2943 1.9036 22 6 8.0689 4.4331 2.0569 23 6 5.6368 0.6579 1.2613 24 6 4.1084 0.5780 1.2558 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 3.6139 3.2386 -0.8783 29 1 3.6069 3.2339 0.9016 30 1 5.9210 2.3306 -0.8723 31 1 5.8371 3.8675 0.0212 32 1 4.6307 3.1170 2.4716 33 1 7.6948 5.0477 6.1776 34 1 8.9370 2.4565 5.7754 35 1 10.0369 4.6936 8.0306 36 1 11.2172 4.0971 5.9881 37 1 9.4272 5.6796 0.9578 38 1 7.5076 4.0409 1.2216 39 1 6.0298 0.1663 0.3713 40 1 6.0236 0.1612 2.1511 41 1 3.7151 1.0698 2.1455 42 1 3.7994 -0.4673 1.2518 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_14474854_14772022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:40:51 Heat of formation + Delta-G solvation = -152.519777 kcal Electronic energy + Delta-G solvation = -29766.129176 eV Core-core repulsion = 25545.817148 eV Total energy + Delta-G solvation = -4220.312027 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.078 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -41.77476 -40.03966 -39.68730 -37.93530 -37.78541 -37.43006 -36.57025 -34.91190 -32.01806 -31.86430 -30.95151 -28.60175 -27.58439 -25.07024 -24.45351 -23.84096 -21.95848 -21.72020 -21.06226 -19.99099 -19.31011 -18.59342 -18.46175 -18.04457 -17.73173 -17.50556 -17.16789 -16.87865 -16.61408 -16.05965 -15.80038 -15.54431 -15.36161 -15.30935 -14.97538 -14.42211 -14.25032 -14.11304 -14.09995 -13.98643 -13.79251 -13.59492 -13.34637 -12.99617 -12.90304 -12.78922 -12.72523 -12.59050 -12.52970 -12.38526 -12.22702 -12.10257 -11.80057 -11.71649 -11.65892 -11.52560 -11.21190 -11.16678 -10.59999 -10.16035 -9.81905 -5.25966 -0.59792 -0.51667 0.31358 0.60505 0.96259 1.10990 1.21127 1.43936 1.71658 1.75843 2.02687 2.80696 3.06261 3.25679 3.36162 3.44167 3.52222 3.71643 3.77961 3.87063 3.91175 3.98700 4.09449 4.15137 4.17564 4.20973 4.25808 4.27847 4.30652 4.32784 4.53874 4.60178 4.61236 4.66651 4.77481 4.89020 4.93201 4.96455 5.03490 5.07398 5.16508 5.23057 5.42952 5.88643 6.13823 6.75473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.462 3.538 4 O -0.505 6.505 5 C -0.081 4.081 6 H 0.113 0.887 7 C -0.106 4.106 8 C -0.129 4.129 9 C 0.145 3.855 10 H 0.093 0.907 11 N -1.115 6.115 12 S 2.718 3.282 13 O -0.947 6.947 14 O -0.945 6.945 15 C -0.666 4.666 16 C -0.099 4.099 17 C -0.078 4.078 18 O -0.520 6.520 19 Si 0.679 3.321 20 S 0.162 5.838 21 C -0.208 4.208 22 C -0.093 4.093 23 C -0.135 4.135 24 C -0.112 4.112 25 H 0.063 0.937 26 H 0.103 0.897 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.419 0.581 33 H 0.150 0.850 34 H 0.388 0.612 35 H -0.228 1.228 36 H -0.239 1.239 37 H 0.176 0.824 38 H 0.154 0.846 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.396 1.336 -4.689 5.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.305 3.695 4 O -0.392 6.392 5 C -0.100 4.100 6 H 0.131 0.869 7 C -0.144 4.144 8 C -0.167 4.167 9 C 0.038 3.962 10 H 0.111 0.889 11 N -0.877 5.877 12 S 2.803 3.197 13 O -0.938 6.938 14 O -0.934 6.934 15 C -0.764 4.764 16 C -0.220 4.220 17 C -0.188 4.188 18 O -0.328 6.328 19 Si 0.575 3.425 20 S 0.426 5.574 21 C -0.344 4.344 22 C -0.121 4.121 23 C -0.174 4.174 24 C -0.150 4.150 25 H 0.082 0.918 26 H 0.121 0.879 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.256 0.744 33 H 0.167 0.833 34 H 0.238 0.762 35 H -0.150 1.150 36 H -0.162 1.162 37 H 0.193 0.807 38 H 0.171 0.829 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.089 0.911 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.599 2.102 -2.737 5.750 hybrid contribution -1.547 -1.205 -1.493 2.465 sum 3.052 0.897 -4.230 5.292 Atomic orbital electron populations 1.23314 0.75990 1.03973 1.02688 1.86508 1.23679 1.33370 1.83870 1.23842 0.92090 0.81417 0.72158 1.90691 1.67222 1.36372 1.44956 1.21174 0.86930 0.99466 1.02424 0.86895 1.21436 0.95294 0.93484 1.04156 1.21930 0.95576 1.01760 0.97482 1.20963 0.98104 0.92563 0.84579 0.88933 1.55831 1.26786 1.73721 1.31365 1.01522 0.72841 0.73800 0.71549 1.93592 1.68117 1.76314 1.55731 1.93572 1.77273 1.39538 1.83061 1.29910 1.22760 1.23577 1.00122 1.24940 0.97633 0.99666 0.99728 1.25054 1.15550 0.87337 0.90899 1.86675 1.45791 1.14780 1.85583 0.95120 0.73595 0.90763 0.83019 1.84233 1.31650 1.43162 0.98367 1.25915 1.02463 1.04644 1.01336 1.19850 0.98601 0.98838 0.94821 1.22061 0.95313 0.95688 1.04380 1.21524 0.96030 1.01527 0.95888 0.91797 0.87876 0.91753 0.90204 0.90723 0.89615 0.90186 0.74432 0.83296 0.76216 1.15034 1.16239 0.80689 0.82908 0.89942 0.89410 0.91091 0.89900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 101.05 1.07 1.05 16 2 O -0.36 -0.46 10.46 -39.26 -0.41 -0.87 16 3 C 0.46 0.73 7.26 36.01 0.26 0.99 16 4 O -0.51 -2.25 15.73 -18.75 -0.29 -2.54 16 5 C -0.08 0.12 2.63 -91.77 -0.24 -0.12 16 6 H 0.11 -0.37 8.14 -51.93 -0.42 -0.79 16 7 C -0.11 0.22 4.30 -26.73 -0.12 0.10 16 8 C -0.13 0.51 5.38 -26.73 -0.14 0.37 16 9 C 0.14 -0.37 1.84 -67.93 -0.13 -0.49 16 10 H 0.09 -0.32 6.35 -51.93 -0.33 -0.65 16 11 N -1.12 0.90 4.52 -4.89 -0.02 0.88 16 12 S 2.72 6.84 4.13 -107.50 -0.44 6.39 16 13 O -0.95 -5.55 17.19 -61.38 -1.05 -6.60 16 14 O -0.94 -4.20 16.28 -65.10 -1.06 -5.26 16 15 C -0.67 -0.82 5.71 -41.21 -0.24 -1.05 16 16 C -0.10 -0.10 5.78 -36.01 -0.21 -0.31 16 17 C -0.08 -0.08 2.40 36.00 0.09 0.01 16 18 O -0.52 -1.49 9.74 -59.24 -0.58 -2.06 16 19 Si 0.68 -0.71 31.08 -169.99 -5.28 -5.99 16 20 S 0.16 -0.19 20.85 -107.50 -2.24 -2.43 16 21 C -0.21 0.34 11.23 29.04 0.33 0.66 16 22 C -0.09 0.09 9.03 -41.21 -0.37 -0.29 16 23 C -0.14 0.29 5.64 -26.70 -0.15 0.14 16 24 C -0.11 0.17 4.97 -26.71 -0.13 0.04 16 25 H 0.06 -0.02 8.13 -51.93 -0.42 -0.45 16 26 H 0.10 -0.28 8.14 -51.93 -0.42 -0.70 16 27 H 0.06 -0.01 8.13 -51.93 -0.42 -0.43 16 28 H 0.08 -0.12 8.10 -51.93 -0.42 -0.54 16 29 H 0.07 -0.09 6.48 -51.93 -0.34 -0.43 16 30 H 0.09 -0.46 8.14 -51.93 -0.42 -0.88 16 31 H 0.08 -0.38 7.20 -51.93 -0.37 -0.75 16 32 H 0.42 -0.66 6.74 -34.47 -0.23 -0.89 16 33 H 0.15 0.07 7.96 -51.93 -0.41 -0.34 16 34 H 0.39 0.05 8.50 45.56 0.39 0.44 16 35 H -0.23 -0.28 7.11 56.52 0.40 0.12 16 36 H -0.24 -0.09 7.11 56.52 0.40 0.31 16 37 H 0.18 -0.73 8.06 -52.49 -0.42 -1.15 16 38 H 0.15 -0.53 4.45 -52.48 -0.23 -0.76 16 39 H 0.08 -0.32 8.14 -51.93 -0.42 -0.74 16 40 H 0.09 -0.05 7.91 -51.93 -0.41 -0.46 16 41 H 0.07 -0.05 7.38 -51.93 -0.38 -0.43 16 42 H 0.08 -0.13 8.11 -51.93 -0.42 -0.55 16 LS Contribution 357.00 15.07 5.38 5.38 Total: 0.00 -10.79 357.00 -11.31 -22.10 By element: Atomic # 1 Polarization: -4.78 SS G_CDS: -5.32 Total: -10.10 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 0.02 Total: 1.11 kcal Atomic # 7 Polarization: 0.90 SS G_CDS: -0.02 Total: 0.88 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -3.40 Total: -17.33 kcal Atomic # 14 Polarization: -0.71 SS G_CDS: -5.28 Total: -5.99 kcal Atomic # 16 Polarization: 6.64 SS G_CDS: -2.69 Total: 3.96 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -10.79 -11.31 -22.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14474854_14772022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.419 kcal (2) G-P(sol) polarization free energy of solvation -10.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds