Wall clock time and date at job start Mon Mar 8 2021 11:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34231 * 117.00006 * 2 1 4 4 O 1.20826 * 119.99907 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99867 * 179.72436 * 3 2 1 6 6 H 1.09006 * 109.46897 * 60.28133 * 5 3 2 7 7 C 1.53008 * 109.46801 * 180.27742 * 5 3 2 8 8 C 1.52999 * 109.46865 * 180.02562 * 7 5 3 9 9 C 1.53004 * 109.46888 * 300.00021 * 8 7 5 10 10 H 1.09000 * 109.46838 * 179.97438 * 9 8 7 11 11 N 1.46492 * 109.47178 * 300.00092 * 9 8 7 12 12 S 1.65606 * 120.00189 * 217.43774 * 11 9 8 13 13 O 1.42097 * 106.40522 * 180.26287 * 12 11 9 14 14 O 1.42104 * 106.40047 * 313.18594 * 12 11 9 15 15 C 1.76205 * 107.21637 * 66.72094 * 12 11 9 16 16 C 1.33385 * 122.53642 * 166.38256 * 15 12 11 17 17 C 1.50698 * 125.20356 * 0.02917 * 16 15 12 18 18 O 1.42898 * 109.47561 * 39.71835 * 17 16 15 19 19 Si 1.86306 * 109.47172 * 159.71866 * 17 16 15 20 20 S 1.75887 * 109.59221 * 180.02562 * 16 15 12 21 21 C 1.75876 * 90.97109 * 359.97438 * 20 16 15 22 22 C 1.33395 * 109.59167 * 359.73304 * 21 20 16 23 23 C 1.52999 * 109.47430 * 60.00436 * 9 8 7 24 24 C 1.52990 * 109.47163 * 300.28007 * 5 3 2 25 25 H 1.09003 * 109.46824 * 59.99443 * 1 2 3 26 26 H 1.08999 * 109.46949 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46438 * 299.99822 * 1 2 3 28 28 H 1.09001 * 109.46943 * 300.00176 * 7 5 3 29 29 H 1.08997 * 109.47175 * 60.00285 * 7 5 3 30 30 H 1.08997 * 109.47321 * 59.99970 * 8 7 5 31 31 H 1.08999 * 109.47253 * 179.97438 * 8 7 5 32 32 H 0.96997 * 120.00398 * 37.44103 * 11 9 8 33 33 H 1.09003 * 109.47311 * 279.71418 * 17 16 15 34 34 H 0.96702 * 113.99958 * 66.23207 * 18 17 16 35 35 H 1.48501 * 110.00250 * 179.97438 * 19 17 16 36 36 H 1.48507 * 109.99682 * 301.31825 * 19 17 16 37 37 H 1.07996 * 125.20482 * 179.97438 * 21 20 16 38 38 H 1.08007 * 122.53988 * 180.23519 * 22 21 20 39 39 H 1.09006 * 109.47167 * 59.99537 * 23 9 8 40 40 H 1.08996 * 109.47669 * 179.97438 * 23 9 8 41 41 H 1.08998 * 109.46966 * 299.99345 * 24 5 3 42 42 H 1.08994 * 109.47751 * 60.00336 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 0.0063 6 1 3.9597 0.7831 -0.8835 7 6 4.0001 2.7422 0.0119 8 6 5.5280 2.8222 0.0176 9 6 6.0705 2.1251 1.2670 10 1 7.1590 2.1818 1.2708 11 7 5.5424 2.7859 2.4630 12 16 6.5018 2.9674 3.8006 13 8 5.7089 3.6295 4.7763 14 8 7.1193 1.7074 4.0255 15 6 7.7939 4.0845 3.3679 16 6 8.5851 4.6536 4.2786 17 6 8.4957 4.4330 5.7666 18 8 8.2210 3.0553 6.0283 19 14 10.1123 4.9060 6.5628 20 16 9.7488 5.7009 3.4769 21 6 9.0760 5.2943 1.9036 22 6 8.0689 4.4331 2.0569 23 6 5.6368 0.6579 1.2613 24 6 4.1084 0.5780 1.2558 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 3.6139 3.2386 -0.8783 29 1 3.6069 3.2339 0.9016 30 1 5.9210 2.3306 -0.8723 31 1 5.8371 3.8675 0.0212 32 1 4.6307 3.1170 2.4716 33 1 7.6948 5.0477 6.1776 34 1 8.9370 2.4565 5.7754 35 1 10.0369 4.6936 8.0306 36 1 11.2172 4.0971 5.9881 37 1 9.4272 5.6796 0.9578 38 1 7.5076 4.0409 1.2216 39 1 6.0298 0.1663 0.3713 40 1 6.0236 0.1612 2.1511 41 1 3.7151 1.0698 2.1455 42 1 3.7994 -0.4673 1.2518 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_14474854_14772022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:40:50 Heat of formation + Delta-G solvation = -154.753511 kcal Electronic energy + Delta-G solvation = -29766.226038 eV Core-core repulsion = 25545.817148 eV Total energy + Delta-G solvation = -4220.408889 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.078 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.82542 -39.95171 -39.68258 -38.19956 -37.83540 -37.55890 -36.83401 -34.86694 -31.86175 -31.78759 -30.86674 -28.57254 -27.57394 -25.00637 -24.42373 -23.66159 -21.94504 -21.70510 -21.01732 -19.98127 -19.31310 -18.67369 -18.56436 -18.02487 -17.78150 -17.55927 -17.18961 -16.94115 -16.65735 -16.09859 -15.78727 -15.55280 -15.22610 -15.19774 -14.92105 -14.44934 -14.25538 -14.13789 -14.02700 -13.87302 -13.73201 -13.62195 -13.23214 -13.15166 -13.07693 -12.96369 -12.77911 -12.58005 -12.50206 -12.29413 -12.20811 -12.02778 -11.86250 -11.65474 -11.56916 -11.46117 -11.24631 -11.13571 -10.49549 -10.10632 -9.71161 -5.20760 -0.71514 -0.49353 0.38170 0.67066 1.01812 1.10706 1.18269 1.48058 1.73739 1.77743 1.99669 2.68776 3.02757 3.27889 3.47790 3.56941 3.63443 3.75176 3.88364 4.02850 4.07983 4.13435 4.18420 4.23382 4.26339 4.32692 4.34503 4.39591 4.41183 4.51942 4.66833 4.67488 4.79146 4.87374 4.90274 5.07301 5.12607 5.15856 5.18171 5.22420 5.35866 5.37062 5.44515 5.96452 6.12761 6.66052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.458 3.542 4 O -0.541 6.541 5 C -0.075 4.075 6 H 0.139 0.861 7 C -0.107 4.107 8 C -0.120 4.120 9 C 0.137 3.863 10 H 0.107 0.893 11 N -1.107 6.107 12 S 2.725 3.275 13 O -0.993 6.993 14 O -0.973 6.973 15 C -0.674 4.674 16 C -0.124 4.124 17 C -0.101 4.101 18 O -0.545 6.545 19 Si 0.766 3.234 20 S 0.192 5.808 21 C -0.204 4.204 22 C -0.104 4.104 23 C -0.135 4.135 24 C -0.111 4.111 25 H 0.061 0.939 26 H 0.127 0.873 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.111 0.889 31 H 0.094 0.906 32 H 0.422 0.578 33 H 0.144 0.856 34 H 0.394 0.606 35 H -0.264 1.264 36 H -0.253 1.253 37 H 0.206 0.794 38 H 0.177 0.823 39 H 0.108 0.892 40 H 0.068 0.932 41 H 0.054 0.946 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.999 1.796 -6.958 8.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.303 3.697 4 O -0.430 6.430 5 C -0.094 4.094 6 H 0.156 0.844 7 C -0.145 4.145 8 C -0.159 4.159 9 C 0.031 3.969 10 H 0.125 0.875 11 N -0.871 5.871 12 S 2.813 3.187 13 O -0.983 6.983 14 O -0.963 6.963 15 C -0.776 4.776 16 C -0.245 4.245 17 C -0.210 4.210 18 O -0.354 6.354 19 Si 0.663 3.337 20 S 0.457 5.543 21 C -0.339 4.339 22 C -0.132 4.132 23 C -0.174 4.174 24 C -0.148 4.148 25 H 0.080 0.920 26 H 0.146 0.854 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.130 0.870 31 H 0.112 0.888 32 H 0.259 0.741 33 H 0.162 0.838 34 H 0.246 0.754 35 H -0.189 1.189 36 H -0.178 1.178 37 H 0.223 0.777 38 H 0.194 0.806 39 H 0.126 0.874 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.170 2.533 -5.017 8.346 hybrid contribution -2.085 -1.364 -0.813 2.621 sum 4.084 1.169 -5.830 7.213 Atomic orbital electron populations 1.23495 0.75323 1.05493 1.02290 1.86513 1.24530 1.33349 1.83577 1.24545 0.93311 0.80923 0.70921 1.90670 1.68218 1.37406 1.46746 1.21288 0.84660 1.00185 1.03261 0.84353 1.21454 0.96845 0.92853 1.03348 1.21946 0.93764 1.02791 0.97391 1.21257 0.99031 0.92323 0.84311 0.87507 1.55599 1.26504 1.73812 1.31180 1.00869 0.72820 0.73323 0.71699 1.93526 1.69462 1.77002 1.58278 1.93528 1.77809 1.41038 1.83899 1.29751 1.22473 1.23804 1.01527 1.25071 0.98896 1.00897 0.99674 1.25466 1.17204 0.86435 0.91861 1.86640 1.46871 1.16026 1.85905 0.94198 0.70856 0.89210 0.79461 1.84093 1.30192 1.41659 0.98397 1.26357 1.01677 1.03746 1.02168 1.20092 0.99340 0.99327 0.94400 1.22080 0.94515 0.96100 1.04708 1.21496 0.96681 1.01326 0.95345 0.91975 0.85442 0.92422 0.90486 0.92175 0.87019 0.88789 0.74052 0.83847 0.75440 1.18873 1.17769 0.77698 0.80568 0.87384 0.91305 0.92679 0.89925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 113.37 1.20 1.19 16 2 O -0.36 -1.12 10.46 -51.43 -0.54 -1.66 16 3 C 0.46 1.79 7.26 71.24 0.52 2.30 16 4 O -0.54 -5.58 15.73 21.96 0.35 -5.24 16 5 C -0.08 0.26 2.63 -11.54 -0.03 0.23 16 6 H 0.14 -1.18 8.14 -2.38 -0.02 -1.20 16 7 C -0.11 0.49 4.30 30.60 0.13 0.62 16 8 C -0.12 1.21 5.38 30.60 0.16 1.37 16 9 C 0.14 -0.82 1.84 44.99 0.08 -0.74 16 10 H 0.11 -0.91 6.35 -2.39 -0.02 -0.93 16 11 N -1.11 0.93 4.52 -169.40 -0.77 0.16 16 12 S 2.72 18.43 4.13 -56.49 -0.23 18.20 16 13 O -0.99 -14.50 17.19 -123.98 -2.13 -16.63 16 14 O -0.97 -10.64 16.28 -120.42 -1.96 -12.60 16 15 C -0.67 -1.88 5.71 21.21 0.12 -1.76 16 16 C -0.12 -0.31 5.78 24.59 0.14 -0.17 16 17 C -0.10 -0.36 2.40 71.24 0.17 -0.19 16 18 O -0.54 -4.45 9.74 -126.03 -1.23 -5.68 16 19 Si 0.77 -1.16 31.08 68.60 2.13 0.97 16 20 S 0.19 -0.69 20.85 -56.49 -1.18 -1.87 16 21 C -0.20 1.14 11.23 66.72 0.75 1.89 16 22 C -0.10 0.34 9.03 21.22 0.19 0.54 16 23 C -0.14 0.65 5.64 30.61 0.17 0.82 16 24 C -0.11 0.30 4.97 30.61 0.15 0.46 16 25 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 26 H 0.13 -0.73 8.14 -2.39 -0.02 -0.74 16 27 H 0.06 0.06 8.13 -2.39 -0.02 0.04 16 28 H 0.08 -0.28 8.10 -2.39 -0.02 -0.30 16 29 H 0.06 -0.10 6.48 -2.39 -0.02 -0.11 16 30 H 0.11 -1.61 8.14 -2.39 -0.02 -1.63 16 31 H 0.09 -1.14 7.20 -2.39 -0.02 -1.16 16 32 H 0.42 -0.71 6.74 -96.75 -0.65 -1.36 16 33 H 0.14 0.49 7.96 -2.39 -0.02 0.47 16 34 H 0.39 1.06 8.50 -74.06 -0.63 0.43 16 35 H -0.26 -1.06 7.11 99.48 0.71 -0.35 16 36 H -0.25 -0.16 7.11 99.48 0.71 0.54 16 37 H 0.21 -2.47 8.06 -2.91 -0.02 -2.50 16 38 H 0.18 -1.63 4.45 -2.91 -0.01 -1.64 16 39 H 0.11 -1.06 8.14 -2.38 -0.02 -1.08 16 40 H 0.07 -0.03 7.91 -2.39 -0.02 -0.05 16 41 H 0.05 0.02 7.38 -2.39 -0.02 0.00 16 42 H 0.08 -0.23 8.11 -2.39 -0.02 -0.25 16 Total: 0.00 -27.63 357.00 -1.96 -29.59 By element: Atomic # 1 Polarization: -11.66 SS G_CDS: -0.16 Total: -11.82 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: 3.76 Total: 6.57 kcal Atomic # 7 Polarization: 0.93 SS G_CDS: -0.77 Total: 0.16 kcal Atomic # 8 Polarization: -36.29 SS G_CDS: -5.51 Total: -41.80 kcal Atomic # 14 Polarization: -1.16 SS G_CDS: 2.13 Total: 0.97 kcal Atomic # 16 Polarization: 17.74 SS G_CDS: -1.41 Total: 16.33 kcal Total: -27.63 -1.96 -29.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14474854_14772022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.163 kcal (2) G-P(sol) polarization free energy of solvation -27.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds