Wall clock time and date at job start Mon Mar 8 2021 11:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 117.00171 * 2 1 4 4 O 1.20830 * 119.99496 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00409 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.46647 * 299.99509 * 5 3 2 7 7 C 1.53002 * 109.47306 * 59.99165 * 5 3 2 8 8 C 1.52996 * 109.46972 * 180.02562 * 7 5 3 9 9 C 1.52997 * 109.47165 * 300.00293 * 8 7 5 10 10 H 1.09000 * 109.47140 * 299.99954 * 9 8 7 11 11 N 1.46506 * 109.47277 * 180.02562 * 9 8 7 12 12 S 1.65603 * 119.99883 * 94.99569 * 11 9 8 13 13 O 1.42104 * 106.39910 * 178.54161 * 12 11 9 14 14 O 1.42100 * 106.40433 * 311.46443 * 12 11 9 15 15 C 1.76202 * 107.21625 * 65.00440 * 12 11 9 16 16 C 1.33393 * 122.53841 * 90.02336 * 15 12 11 17 17 S 1.75884 * 109.59224 * 180.02562 * 16 15 12 18 18 C 1.75884 * 90.97175 * 359.97438 * 17 16 15 19 19 C 1.50701 * 125.20506 * 180.02562 * 18 17 16 20 20 O 1.42896 * 109.46857 * 119.97653 * 19 18 17 21 21 Si 1.86302 * 109.46939 * 359.97438 * 19 18 17 22 22 C 1.33395 * 109.59165 * 359.73426 * 18 17 16 23 23 C 1.52999 * 109.47592 * 60.00300 * 9 8 7 24 24 C 1.52997 * 109.47238 * 179.97438 * 5 3 2 25 25 H 1.09005 * 109.47571 * 300.00511 * 1 2 3 26 26 H 1.08999 * 109.47130 * 60.00419 * 1 2 3 27 27 H 1.09000 * 109.47075 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.46974 * 300.00616 * 7 5 3 29 29 H 1.08996 * 109.46550 * 60.00722 * 7 5 3 30 30 H 1.09000 * 109.47054 * 60.00300 * 8 7 5 31 31 H 1.09001 * 109.46997 * 180.02562 * 8 7 5 32 32 H 0.97001 * 120.00001 * 275.00161 * 11 9 8 33 33 H 1.07998 * 125.19931 * 359.97438 * 16 15 12 34 34 H 1.08996 * 109.47151 * 239.97579 * 19 18 17 35 35 H 0.96702 * 114.00700 * 299.99882 * 20 19 18 36 36 H 1.48501 * 110.00161 * 58.67884 * 21 19 18 37 37 H 1.48494 * 109.99919 * 180.02562 * 21 19 18 38 38 H 1.08001 * 122.53827 * 180.24231 * 22 18 17 39 39 H 1.08993 * 109.47839 * 180.02562 * 23 9 8 40 40 H 1.09000 * 109.47160 * 59.99666 * 23 9 8 41 41 H 1.09001 * 109.46922 * 59.99800 * 24 5 3 42 42 H 1.09000 * 109.47140 * 299.99500 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9563 0.7807 0.8892 7 6 4.1129 0.5814 -1.2501 8 6 5.6408 0.6610 -1.2503 9 6 6.0751 2.1281 -1.2499 10 1 5.6854 2.6226 -2.1397 11 7 7.5381 2.2044 -1.2507 12 16 8.3577 2.3728 -2.6799 13 8 9.7365 2.4500 -2.3450 14 8 7.8263 1.3961 -3.5647 15 6 7.9199 3.9423 -3.3503 16 6 8.6013 5.0555 -3.0750 17 16 7.8737 6.4164 -3.9188 18 6 6.6493 5.3659 -4.6193 19 6 5.5498 5.8123 -5.5483 20 8 5.6697 5.1228 -6.7941 21 14 5.6887 7.6474 -5.8382 22 6 6.8465 4.1125 -4.2076 23 6 5.5285 2.8216 -0.0004 24 6 4.0001 2.7421 -0.0011 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.8039 -0.4638 -1.2501 29 1 3.7229 1.0757 -2.1398 30 1 6.0305 0.1666 -0.3605 31 1 6.0302 0.1674 -2.1407 32 1 8.0268 2.1561 -0.4142 33 1 9.4669 5.1124 -2.4316 34 1 4.5820 5.5875 -5.1003 35 1 6.5085 5.2769 -7.2500 36 1 7.0165 7.9708 -6.4194 37 1 4.6097 8.1003 -6.7524 38 1 6.2139 3.2934 -4.5163 39 1 5.8375 3.8668 -0.0004 40 1 5.9182 2.3271 0.8894 41 1 3.6106 3.2364 0.8889 42 1 3.6101 3.2360 -0.8911 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_14475164_15065232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:43:51 Heat of formation + Delta-G solvation = -160.827579 kcal Electronic energy + Delta-G solvation = -28976.300128 eV Core-core repulsion = 24755.627848 eV Total energy + Delta-G solvation = -4220.672281 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.078 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -41.72409 -39.80465 -39.54272 -38.20881 -37.69429 -37.45983 -36.85749 -35.46139 -31.99483 -31.89253 -30.77676 -28.47621 -27.29948 -25.01351 -24.62843 -23.89897 -22.03549 -21.49219 -21.10292 -20.11329 -19.27970 -18.61992 -18.49326 -18.01167 -17.88601 -17.69876 -17.36235 -17.22809 -16.48829 -16.09738 -15.61698 -15.45863 -15.33788 -15.02664 -14.94693 -14.47048 -14.27160 -14.23927 -14.15231 -13.90603 -13.85817 -13.54884 -13.37192 -13.15023 -13.03664 -12.99855 -12.94908 -12.59209 -12.48360 -12.38096 -12.34352 -12.30409 -11.85939 -11.75990 -11.61704 -11.54649 -11.23178 -10.91399 -10.58703 -10.27432 -9.90297 -5.21346 -0.77888 -0.52259 0.26395 0.52594 0.90788 1.11711 1.20578 1.42308 1.70497 1.78237 2.00218 2.69903 3.11786 3.27388 3.40557 3.42677 3.51347 3.61067 3.76640 3.77697 3.93811 4.02895 4.06228 4.15694 4.17423 4.19378 4.24403 4.27631 4.32269 4.34886 4.57250 4.58913 4.64934 4.66087 4.83697 4.88704 4.92637 4.98691 5.01081 5.05080 5.17347 5.25251 5.42304 5.82150 6.19840 6.74925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.463 3.537 4 O -0.505 6.505 5 C -0.082 4.082 6 H 0.113 0.887 7 C -0.110 4.110 8 C -0.138 4.138 9 C 0.151 3.849 10 H 0.088 0.912 11 N -1.110 6.110 12 S 2.707 3.293 13 O -0.956 6.956 14 O -0.946 6.946 15 C -0.688 4.688 16 C -0.083 4.083 17 S 0.161 5.839 18 C -0.226 4.226 19 C -0.033 4.033 20 O -0.521 6.521 21 Si 0.651 3.349 22 C -0.047 4.047 23 C -0.124 4.124 24 C -0.103 4.103 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.103 0.897 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.420 0.580 33 H 0.186 0.814 34 H 0.130 0.870 35 H 0.379 0.621 36 H -0.240 1.240 37 H -0.232 1.232 38 H 0.157 0.843 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.207 2.071 4.001 4.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.306 3.694 4 O -0.393 6.393 5 C -0.101 4.101 6 H 0.131 0.869 7 C -0.148 4.148 8 C -0.177 4.177 9 C 0.044 3.956 10 H 0.106 0.894 11 N -0.870 5.870 12 S 2.793 3.207 13 O -0.947 6.947 14 O -0.936 6.936 15 C -0.788 4.788 16 C -0.222 4.222 17 S 0.425 5.575 18 C -0.344 4.344 19 C -0.146 4.146 20 O -0.327 6.327 21 Si 0.549 3.451 22 C -0.075 4.075 23 C -0.163 4.163 24 C -0.142 4.142 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.121 0.879 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.255 0.745 33 H 0.203 0.797 34 H 0.148 0.852 35 H 0.227 0.773 36 H -0.164 1.164 37 H -0.155 1.155 38 H 0.175 0.825 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.139 3.803 2.888 4.909 hybrid contribution -0.071 -1.403 -0.239 1.425 sum -1.210 2.400 2.649 3.773 Atomic orbital electron populations 1.23311 0.75988 1.03973 1.02680 1.86507 1.23679 1.33381 1.83868 1.23811 0.92041 0.81403 0.72144 1.90690 1.67213 1.36383 1.44968 1.21195 0.86951 0.99562 1.02423 0.86944 1.21526 0.95466 1.01851 0.96005 1.22108 0.94939 0.96145 1.04543 1.20906 0.78003 0.96719 0.99996 0.89411 1.55639 1.15811 1.90112 1.25404 1.01698 0.72768 0.73405 0.72783 1.93617 1.30493 1.87056 1.83485 1.93615 1.80007 1.55870 1.64074 1.30049 1.09092 1.22712 1.16930 1.25917 1.01236 0.94939 1.00079 1.84425 1.21585 1.10663 1.40867 1.25030 1.03864 0.97288 1.08186 1.24412 0.98251 1.08136 0.83780 1.86646 1.42541 1.70599 1.32960 0.95340 0.82948 0.75342 0.91472 1.19627 0.95753 0.97434 0.94727 1.21866 0.95025 1.01735 0.97632 1.21445 0.94787 0.93436 1.04486 0.91796 0.91758 0.87887 0.89659 0.90858 0.90493 0.89351 0.74451 0.79699 0.85233 0.77295 1.16359 1.15539 0.82540 0.90206 0.90498 0.90153 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 101.05 1.07 1.04 16 2 O -0.36 -0.30 10.47 -39.25 -0.41 -0.71 16 3 C 0.46 0.51 7.26 36.00 0.26 0.77 16 4 O -0.51 -2.00 15.73 -18.75 -0.30 -2.29 16 5 C -0.08 0.16 2.63 -91.77 -0.24 -0.09 16 6 H 0.11 -0.38 8.14 -51.93 -0.42 -0.80 16 7 C -0.11 0.24 5.13 -26.73 -0.14 0.10 16 8 C -0.14 0.32 5.53 -26.73 -0.15 0.17 16 9 C 0.15 -0.42 2.65 -67.93 -0.18 -0.60 16 10 H 0.09 -0.26 7.41 -51.93 -0.38 -0.65 16 11 N -1.11 2.91 5.47 -4.89 -0.03 2.88 16 12 S 2.71 1.57 5.71 -107.50 -0.61 0.96 16 13 O -0.96 -3.20 17.64 -57.17 -1.01 -4.21 16 14 O -0.95 -3.31 16.89 -57.17 -0.97 -4.27 16 15 C -0.69 0.10 5.72 -41.21 -0.24 -0.14 16 16 C -0.08 0.09 10.70 29.04 0.31 0.40 16 17 S 0.16 -0.25 20.58 -107.50 -2.21 -2.46 16 18 C -0.23 0.14 5.72 -36.00 -0.21 -0.07 16 19 C -0.03 0.03 2.96 36.01 0.11 0.14 16 20 O -0.52 -0.31 12.86 -35.23 -0.45 -0.76 16 21 Si 0.65 -1.00 30.97 -169.99 -5.26 -6.27 16 22 C -0.05 0.00 9.12 -41.21 -0.38 -0.38 16 23 C -0.12 0.48 5.46 -26.70 -0.15 0.33 16 24 C -0.10 0.24 4.50 -26.71 -0.12 0.12 16 25 H 0.06 -0.05 8.13 -51.93 -0.42 -0.47 16 26 H 0.06 -0.05 8.13 -51.93 -0.42 -0.47 16 27 H 0.10 -0.32 8.14 -51.93 -0.42 -0.74 16 28 H 0.08 -0.19 8.11 -51.93 -0.42 -0.61 16 29 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 30 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 31 H 0.09 -0.07 7.64 -51.93 -0.40 -0.47 16 32 H 0.42 -1.90 8.84 -34.47 -0.30 -2.21 16 33 H 0.19 -0.56 8.00 -52.49 -0.42 -0.98 16 34 H 0.13 -0.28 7.96 -51.93 -0.41 -0.69 16 35 H 0.38 -0.80 8.70 45.56 0.40 -0.40 16 36 H -0.24 -0.05 7.11 56.52 0.40 0.35 16 37 H -0.23 -0.30 7.11 56.52 0.40 0.10 16 38 H 0.16 -0.01 7.96 -52.49 -0.42 -0.43 16 39 H 0.08 -0.34 8.14 -51.93 -0.42 -0.77 16 40 H 0.08 -0.36 8.14 -51.93 -0.42 -0.78 16 41 H 0.08 -0.14 8.10 -51.93 -0.42 -0.56 16 42 H 0.08 -0.12 8.10 -51.93 -0.42 -0.55 16 LS Contribution 374.39 15.07 5.64 5.64 Total: 0.00 -10.61 374.39 -11.43 -22.04 By element: Atomic # 1 Polarization: -6.57 SS G_CDS: -5.78 Total: -12.36 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -0.04 Total: 1.81 kcal Atomic # 7 Polarization: 2.91 SS G_CDS: -0.03 Total: 2.88 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -3.13 Total: -12.24 kcal Atomic # 14 Polarization: -1.00 SS G_CDS: -5.26 Total: -6.27 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.83 Total: -1.50 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -10.61 -11.43 -22.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14475164_15065232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.788 kcal (2) G-P(sol) polarization free energy of solvation -10.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds