Wall clock time and date at job start Mon Mar 8 2021 11:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 117.00171 * 2 1 4 4 O 1.20830 * 119.99496 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00409 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.46647 * 299.99509 * 5 3 2 7 7 C 1.53002 * 109.47306 * 59.99165 * 5 3 2 8 8 C 1.52996 * 109.46972 * 180.02562 * 7 5 3 9 9 C 1.52997 * 109.47165 * 300.00293 * 8 7 5 10 10 H 1.09000 * 109.47140 * 299.99954 * 9 8 7 11 11 N 1.46506 * 109.47277 * 180.02562 * 9 8 7 12 12 S 1.65603 * 119.99883 * 94.99569 * 11 9 8 13 13 O 1.42104 * 106.39910 * 178.54161 * 12 11 9 14 14 O 1.42100 * 106.40433 * 311.46443 * 12 11 9 15 15 C 1.76202 * 107.21625 * 65.00440 * 12 11 9 16 16 C 1.33393 * 122.53841 * 90.02336 * 15 12 11 17 17 S 1.75884 * 109.59224 * 180.02562 * 16 15 12 18 18 C 1.75884 * 90.97175 * 359.97438 * 17 16 15 19 19 C 1.50701 * 125.20506 * 180.02562 * 18 17 16 20 20 O 1.42896 * 109.46857 * 119.97653 * 19 18 17 21 21 Si 1.86302 * 109.46939 * 359.97438 * 19 18 17 22 22 C 1.33395 * 109.59165 * 359.73426 * 18 17 16 23 23 C 1.52999 * 109.47592 * 60.00300 * 9 8 7 24 24 C 1.52997 * 109.47238 * 179.97438 * 5 3 2 25 25 H 1.09005 * 109.47571 * 300.00511 * 1 2 3 26 26 H 1.08999 * 109.47130 * 60.00419 * 1 2 3 27 27 H 1.09000 * 109.47075 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.46974 * 300.00616 * 7 5 3 29 29 H 1.08996 * 109.46550 * 60.00722 * 7 5 3 30 30 H 1.09000 * 109.47054 * 60.00300 * 8 7 5 31 31 H 1.09001 * 109.46997 * 180.02562 * 8 7 5 32 32 H 0.97001 * 120.00001 * 275.00161 * 11 9 8 33 33 H 1.07998 * 125.19931 * 359.97438 * 16 15 12 34 34 H 1.08996 * 109.47151 * 239.97579 * 19 18 17 35 35 H 0.96702 * 114.00700 * 299.99882 * 20 19 18 36 36 H 1.48501 * 110.00161 * 58.67884 * 21 19 18 37 37 H 1.48494 * 109.99919 * 180.02562 * 21 19 18 38 38 H 1.08001 * 122.53827 * 180.24231 * 22 18 17 39 39 H 1.08993 * 109.47839 * 180.02562 * 23 9 8 40 40 H 1.09000 * 109.47160 * 59.99666 * 23 9 8 41 41 H 1.09001 * 109.46922 * 59.99800 * 24 5 3 42 42 H 1.09000 * 109.47140 * 299.99500 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9563 0.7807 0.8892 7 6 4.1129 0.5814 -1.2501 8 6 5.6408 0.6610 -1.2503 9 6 6.0751 2.1281 -1.2499 10 1 5.6854 2.6226 -2.1397 11 7 7.5381 2.2044 -1.2507 12 16 8.3577 2.3728 -2.6799 13 8 9.7365 2.4500 -2.3450 14 8 7.8263 1.3961 -3.5647 15 6 7.9199 3.9423 -3.3503 16 6 8.6013 5.0555 -3.0750 17 16 7.8737 6.4164 -3.9188 18 6 6.6493 5.3659 -4.6193 19 6 5.5498 5.8123 -5.5483 20 8 5.6697 5.1228 -6.7941 21 14 5.6887 7.6474 -5.8382 22 6 6.8465 4.1125 -4.2076 23 6 5.5285 2.8216 -0.0004 24 6 4.0001 2.7421 -0.0011 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.8039 -0.4638 -1.2501 29 1 3.7229 1.0757 -2.1398 30 1 6.0305 0.1666 -0.3605 31 1 6.0302 0.1674 -2.1407 32 1 8.0268 2.1561 -0.4142 33 1 9.4669 5.1124 -2.4316 34 1 4.5820 5.5875 -5.1003 35 1 6.5085 5.2769 -7.2500 36 1 7.0165 7.9708 -6.4194 37 1 4.6097 8.1003 -6.7524 38 1 6.2139 3.2934 -4.5163 39 1 5.8375 3.8668 -0.0004 40 1 5.9182 2.3271 0.8894 41 1 3.6106 3.2364 0.8889 42 1 3.6101 3.2360 -0.8911 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_14475164_15065232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:43:50 Heat of formation + Delta-G solvation = -163.649623 kcal Electronic energy + Delta-G solvation = -28976.422501 eV Core-core repulsion = 24755.627848 eV Total energy + Delta-G solvation = -4220.794654 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.078 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.75265 -39.69154 -39.47662 -38.34703 -37.67252 -37.54239 -37.00997 -35.35282 -31.84836 -31.78042 -30.66595 -28.40234 -27.23459 -24.96528 -24.54431 -23.69747 -21.95775 -21.45536 -20.98191 -20.08272 -19.21335 -18.65251 -18.49866 -17.96115 -17.85544 -17.70968 -17.38146 -17.17484 -16.43128 -16.11949 -15.56789 -15.31532 -15.18653 -14.97249 -14.88790 -14.40389 -14.23305 -14.17772 -14.04986 -13.89004 -13.82848 -13.54684 -13.33382 -13.23647 -13.12098 -12.97097 -12.93763 -12.52660 -12.42365 -12.34885 -12.25200 -12.09556 -11.82317 -11.69669 -11.51042 -11.46607 -11.20494 -10.86526 -10.42731 -10.19930 -9.81433 -5.12328 -0.77526 -0.46548 0.34900 0.59529 0.94529 1.14042 1.18932 1.48574 1.75792 1.83594 2.05908 2.68643 3.18311 3.31671 3.53981 3.60240 3.63058 3.72487 3.91270 3.94888 4.13433 4.15665 4.22483 4.26985 4.29603 4.30195 4.38404 4.44649 4.46189 4.53359 4.64766 4.70158 4.84865 4.86242 4.89953 5.04609 5.07717 5.15890 5.20300 5.21906 5.36604 5.40080 5.48414 6.10141 6.33676 6.69421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.461 3.539 4 O -0.540 6.540 5 C -0.078 4.078 6 H 0.133 0.867 7 C -0.106 4.106 8 C -0.138 4.138 9 C 0.146 3.854 10 H 0.087 0.913 11 N -1.096 6.096 12 S 2.722 3.278 13 O -0.986 6.986 14 O -0.981 6.981 15 C -0.695 4.695 16 C -0.084 4.084 17 S 0.189 5.811 18 C -0.231 4.231 19 C -0.042 4.042 20 O -0.541 6.541 21 Si 0.722 3.278 22 C -0.058 4.058 23 C -0.115 4.115 24 C -0.101 4.101 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.127 0.873 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.431 0.569 33 H 0.204 0.796 34 H 0.140 0.860 35 H 0.388 0.612 36 H -0.260 1.260 37 H -0.274 1.274 38 H 0.152 0.848 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.076 0.924 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.675 2.447 5.175 5.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.306 3.694 4 O -0.429 6.429 5 C -0.097 4.097 6 H 0.151 0.849 7 C -0.144 4.144 8 C -0.177 4.177 9 C 0.040 3.960 10 H 0.105 0.895 11 N -0.858 5.858 12 S 2.811 3.189 13 O -0.976 6.976 14 O -0.970 6.970 15 C -0.795 4.795 16 C -0.223 4.223 17 S 0.453 5.547 18 C -0.349 4.349 19 C -0.153 4.153 20 O -0.349 6.349 21 Si 0.624 3.376 22 C -0.087 4.087 23 C -0.154 4.154 24 C -0.139 4.139 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.145 0.855 28 H 0.104 0.896 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.269 0.731 33 H 0.221 0.779 34 H 0.157 0.843 35 H 0.238 0.762 36 H -0.186 1.186 37 H -0.199 1.199 38 H 0.169 0.831 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.095 0.905 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.583 4.141 4.086 5.847 hybrid contribution -0.301 -1.502 -0.640 1.660 sum -0.884 2.639 3.446 4.430 Atomic orbital electron populations 1.23494 0.75275 1.05467 1.02345 1.86512 1.24561 1.33336 1.83577 1.24429 0.93117 0.80929 0.70943 1.90670 1.68158 1.37382 1.46711 1.21298 0.84885 1.00192 1.03284 0.84896 1.21477 0.95555 1.01777 0.95630 1.22094 0.94648 0.96465 1.04464 1.21011 0.77577 0.96645 1.00809 0.89494 1.55301 1.15836 1.89815 1.24860 1.00919 0.71999 0.73193 0.72826 1.93572 1.32485 1.87548 1.84007 1.93572 1.80396 1.57564 1.65516 1.29840 1.09606 1.22449 1.17651 1.26229 1.01438 0.94763 0.99916 1.84328 1.20604 1.09753 1.40043 1.25102 1.04207 0.97442 1.08165 1.24634 0.98796 1.08519 0.83352 1.86615 1.43451 1.71169 1.33677 0.94537 0.79652 0.73552 0.89857 1.19664 0.96089 0.97700 0.95242 1.21823 0.93663 1.02418 0.97502 1.21421 0.95795 0.92919 1.03811 0.92046 0.92226 0.85526 0.89580 0.91596 0.89051 0.90969 0.73067 0.77892 0.84300 0.76226 1.18564 1.19904 0.83079 0.89215 0.88848 0.90500 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.16 16 2 O -0.36 -0.72 10.47 -51.40 -0.54 -1.26 16 3 C 0.46 1.26 7.26 71.23 0.52 1.78 16 4 O -0.54 -4.86 15.73 21.95 0.35 -4.51 16 5 C -0.08 0.32 2.63 -11.54 -0.03 0.29 16 6 H 0.13 -1.08 8.14 -2.39 -0.02 -1.09 16 7 C -0.11 0.45 5.13 30.59 0.16 0.60 16 8 C -0.14 0.65 5.53 30.59 0.17 0.82 16 9 C 0.15 -0.87 2.65 44.99 0.12 -0.75 16 10 H 0.09 -0.49 7.41 -2.39 -0.02 -0.50 16 11 N -1.10 6.20 5.47 -169.38 -0.93 5.27 16 12 S 2.72 4.48 5.71 -56.49 -0.32 4.16 16 13 O -0.99 -6.92 17.64 -128.00 -2.26 -9.18 16 14 O -0.98 -8.12 16.89 -128.00 -2.16 -10.28 16 15 C -0.69 0.15 5.72 21.22 0.12 0.27 16 16 C -0.08 0.25 10.70 66.72 0.71 0.97 16 17 S 0.19 -0.75 20.58 -56.49 -1.16 -1.91 16 18 C -0.23 0.31 5.72 24.59 0.14 0.45 16 19 C -0.04 0.08 2.96 71.24 0.21 0.29 16 20 O -0.54 -0.97 12.86 -148.98 -1.92 -2.88 16 21 Si 0.72 -2.18 30.97 68.60 2.12 -0.06 16 22 C -0.06 -0.03 9.12 21.22 0.19 0.16 16 23 C -0.12 1.03 5.46 30.61 0.17 1.20 16 24 C -0.10 0.50 4.50 30.61 0.14 0.64 16 25 H 0.06 -0.05 8.13 -2.38 -0.02 -0.07 16 26 H 0.06 -0.03 8.13 -2.39 -0.02 -0.05 16 27 H 0.13 -0.84 8.14 -2.39 -0.02 -0.86 16 28 H 0.09 -0.37 8.11 -2.39 -0.02 -0.38 16 29 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 30 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 31 H 0.07 -0.06 7.64 -2.39 -0.02 -0.08 16 32 H 0.43 -4.36 8.84 -96.74 -0.85 -5.21 16 33 H 0.20 -1.47 8.00 -2.91 -0.02 -1.50 16 34 H 0.14 -0.58 7.96 -2.39 -0.02 -0.60 16 35 H 0.39 -1.39 8.70 -74.06 -0.64 -2.04 16 36 H -0.26 -0.08 7.11 99.48 0.71 0.63 16 37 H -0.27 -1.02 7.11 99.48 0.71 -0.31 16 38 H 0.15 0.18 7.96 -2.91 -0.02 0.16 16 39 H 0.09 -0.92 8.14 -2.39 -0.02 -0.94 16 40 H 0.09 -1.10 8.14 -2.39 -0.02 -1.12 16 41 H 0.08 -0.30 8.10 -2.39 -0.02 -0.31 16 42 H 0.07 -0.18 8.10 -2.39 -0.02 -0.20 16 Total: 0.00 -24.78 374.39 -3.40 -28.19 By element: Atomic # 1 Polarization: -15.00 SS G_CDS: -0.40 Total: -15.40 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 3.81 Total: 7.87 kcal Atomic # 7 Polarization: 6.20 SS G_CDS: -0.93 Total: 5.27 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -6.53 Total: -28.12 kcal Atomic # 14 Polarization: -2.18 SS G_CDS: 2.12 Total: -0.06 kcal Atomic # 16 Polarization: 3.73 SS G_CDS: -1.48 Total: 2.25 kcal Total: -24.78 -3.40 -28.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14475164_15065232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.464 kcal (2) G-P(sol) polarization free energy of solvation -24.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds