Wall clock time and date at job start Mon Mar 8 2021 09:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47069 * 2 1 4 4 C 1.52998 * 109.47142 * 239.99578 * 2 1 3 5 5 Si 1.86306 * 109.46909 * 120.00047 * 2 1 3 6 6 C 1.86299 * 109.46912 * 299.99924 * 5 2 1 7 7 C 1.86305 * 109.46703 * 180.02562 * 5 2 1 8 8 O 1.63095 * 109.47281 * 59.99865 * 5 2 1 9 9 C 1.42901 * 113.99791 * 179.97438 * 8 5 2 10 10 C 1.53004 * 109.46860 * 180.02562 * 9 8 5 11 11 C 1.53950 * 113.74237 * 86.26274 * 10 9 8 12 12 N 1.47925 * 85.99684 * 138.00209 * 11 10 9 13 13 S 1.65601 * 134.49825 * 155.35639 * 12 11 10 14 14 O 1.42097 * 106.40419 * 23.54043 * 13 12 11 15 15 O 1.42099 * 106.40102 * 156.46064 * 13 12 11 16 16 C 1.76197 * 107.22066 * 269.99784 * 13 12 11 17 17 C 1.33391 * 122.53683 * 90.02431 * 16 13 12 18 18 S 1.75888 * 109.59027 * 180.02562 * 17 16 13 19 19 C 1.75886 * 90.97298 * 0.02562 * 18 17 16 20 20 C 1.50702 * 125.20192 * 180.02562 * 19 18 17 21 21 O 1.42895 * 109.46782 * 120.02477 * 20 19 18 22 22 Si 1.86293 * 109.47109 * 0.02562 * 20 19 18 23 23 H 1.48502 * 109.47317 * 60.00197 * 22 20 19 24 24 H 1.48503 * 109.47247 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47213 * 300.00186 * 22 20 19 26 26 C 1.33391 * 109.59060 * 359.73105 * 19 18 17 27 27 C 1.47579 * 91.00789 * 335.35638 * 12 11 10 28 28 H 1.08999 * 109.47611 * 299.99914 * 1 2 3 29 29 H 1.09000 * 109.47607 * 60.00455 * 1 2 3 30 30 H 1.09004 * 109.47242 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47324 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47252 * 299.99996 * 3 2 1 33 33 H 1.09002 * 109.47486 * 59.99935 * 3 2 1 34 34 H 1.09004 * 109.47474 * 300.00375 * 4 2 1 35 35 H 1.09011 * 109.46929 * 59.99952 * 4 2 1 36 36 H 1.08992 * 109.47106 * 179.97438 * 4 2 1 37 37 H 1.09005 * 109.46633 * 180.02562 * 6 5 2 38 38 H 1.09004 * 109.47268 * 299.99970 * 6 5 2 39 39 H 1.08992 * 109.47476 * 60.00074 * 6 5 2 40 40 H 1.09002 * 109.46936 * 299.99425 * 7 5 2 41 41 H 1.08991 * 109.47244 * 59.99877 * 7 5 2 42 42 H 1.09000 * 109.46874 * 180.02562 * 7 5 2 43 43 H 1.08998 * 109.47342 * 60.00571 * 9 8 5 44 44 H 1.08998 * 109.47492 * 299.99783 * 9 8 5 45 45 H 1.09002 * 112.94408 * 314.66691 * 10 9 8 46 46 H 1.09006 * 113.76402 * 252.36366 * 11 10 9 47 47 H 1.08997 * 113.76968 * 23.74991 * 11 10 9 48 48 H 1.07997 * 125.20505 * 359.97438 * 17 16 13 49 49 H 1.09008 * 109.46690 * 240.02180 * 20 19 18 50 50 H 0.96700 * 114.00458 * 299.99262 * 21 20 19 51 51 H 1.07995 * 122.53947 * 180.24316 * 26 19 18 52 52 H 1.09003 * 113.77049 * 270.34039 * 27 12 11 53 53 H 1.08993 * 113.77081 * 138.93800 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 14 2.1509 -0.8783 1.5212 6 6 1.5299 0.0000 3.0423 7 6 4.0140 -0.8776 1.5215 8 8 1.6073 -2.4159 1.5212 9 6 2.0294 -3.1816 2.6515 10 6 1.4645 -4.5997 2.5466 11 6 2.3430 -5.5574 1.7214 12 7 2.0563 -6.5591 2.7715 13 16 2.0337 -8.2142 2.8215 14 8 2.8770 -8.6591 1.7678 15 8 2.2313 -8.5773 4.1810 16 6 0.4009 -8.7265 2.4020 17 6 0.0266 -8.9724 1.1455 18 16 -1.6639 -9.4570 1.1178 19 6 -1.7707 -9.2929 2.8657 20 6 -3.0058 -9.5537 3.6889 21 8 -2.7381 -10.5922 4.6333 22 14 -4.3995 -10.0769 2.5690 23 1 -4.0155 -11.3162 1.8465 24 1 -5.6168 -10.3333 3.3801 25 1 -4.6776 -8.9977 1.5875 26 6 -0.5895 -8.9085 3.3518 27 6 1.7984 -5.4910 3.7566 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 -1.7490 -1.2492 35 1 1.6766 -0.2075 -2.1393 36 1 3.1299 -0.7209 -1.2494 37 1 1.8936 -0.5136 3.9323 38 1 1.8933 1.0277 3.0423 39 1 0.4400 0.0001 3.0423 40 1 4.3777 -1.3912 0.6316 41 1 4.3769 0.1501 1.5217 42 1 4.3773 -1.3918 2.4113 43 1 1.6652 -2.7118 3.5652 44 1 3.1182 -3.2255 2.6746 45 1 0.4115 -4.6179 2.2655 46 1 1.9242 -5.8078 0.7467 47 1 3.3905 -5.2601 1.6720 48 1 0.6639 -8.8861 0.2779 49 1 -3.2876 -8.6440 4.2193 50 1 -2.4807 -11.4330 4.2310 51 1 -0.4197 -8.7481 4.4062 52 1 2.6864 -5.1742 4.3038 53 1 0.9453 -5.6884 4.4055 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_14483510_15065232.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:38:20 Heat of formation + Delta-G solvation = -132.426950 kcal Electronic energy + Delta-G solvation = -32744.660890 eV Core-core repulsion = 28380.846526 eV Total energy + Delta-G solvation = -4363.814364 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 407.126 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -40.39980 -39.50515 -38.40847 -37.53849 -37.39355 -37.05161 -36.76624 -31.84039 -30.80059 -29.27483 -28.98817 -27.79323 -27.31758 -27.27407 -27.07821 -25.82237 -24.89084 -21.52654 -21.00956 -20.35110 -19.72125 -19.20618 -18.49684 -17.98982 -17.77742 -17.56928 -16.94862 -16.59360 -16.36879 -15.97873 -15.84873 -15.72438 -15.10223 -14.84900 -14.81630 -14.72963 -14.59590 -14.49278 -14.23174 -14.01055 -13.96972 -13.82881 -13.51351 -13.43793 -13.35471 -13.28478 -13.28288 -13.11188 -12.97574 -12.89420 -12.88500 -12.72392 -12.50707 -12.42619 -12.34247 -12.21819 -12.11656 -11.96739 -11.64034 -11.61085 -11.57793 -11.24636 -11.02107 -10.68783 -10.21522 -10.19565 -10.08588 -9.98762 -9.86911 -0.89129 -0.51242 0.27774 0.53125 0.91944 1.08480 1.35135 1.43721 1.59964 1.83174 1.87516 1.96811 2.21174 2.55621 2.66287 3.02214 3.37052 3.55202 3.64077 3.69138 3.86722 4.06073 4.14814 4.18017 4.18153 4.45949 4.50744 4.51108 4.53482 4.55659 4.65521 4.68057 4.71389 4.79585 4.81997 4.84656 4.86150 4.87097 4.87329 4.88139 4.89131 4.95279 5.03201 5.05546 5.14331 5.14927 5.25442 5.33854 5.40422 5.47135 5.50177 5.51079 5.65281 5.70943 5.72502 6.55930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.387 4.387 3 C -0.142 4.142 4 C -0.137 4.137 5 Si 1.327 2.673 6 C -0.521 4.521 7 C -0.521 4.521 8 O -0.633 6.633 9 C 0.078 3.922 10 C -0.108 4.108 11 C 0.125 3.875 12 N -1.044 6.044 13 S 2.738 3.262 14 O -0.983 6.983 15 O -0.982 6.982 16 C -0.689 4.689 17 C -0.082 4.082 18 S 0.153 5.847 19 C -0.229 4.229 20 C -0.039 4.039 21 O -0.546 6.546 22 Si 0.918 3.082 23 H -0.239 1.239 24 H -0.238 1.238 25 H -0.236 1.236 26 C -0.053 4.053 27 C 0.127 3.873 28 H 0.059 0.941 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.046 0.954 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.043 0.957 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.116 0.884 46 H 0.091 0.909 47 H 0.100 0.900 48 H 0.200 0.800 49 H 0.141 0.859 50 H 0.390 0.610 51 H 0.157 0.843 52 H 0.106 0.894 53 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.675 4.517 -0.882 5.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.429 4.429 3 C -0.199 4.199 4 C -0.194 4.194 5 Si 1.455 2.545 6 C -0.622 4.622 7 C -0.622 4.622 8 O -0.593 6.593 9 C 0.001 3.999 10 C -0.129 4.129 11 C 0.000 4.000 12 N -0.886 5.886 13 S 2.831 3.169 14 O -0.974 6.974 15 O -0.972 6.972 16 C -0.790 4.790 17 C -0.221 4.221 18 S 0.417 5.583 19 C -0.347 4.347 20 C -0.152 4.152 21 O -0.353 6.353 22 Si 0.738 3.262 23 H -0.162 1.162 24 H -0.161 1.161 25 H -0.159 1.159 26 C -0.081 4.081 27 C 0.002 3.998 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.134 0.866 46 H 0.110 0.890 47 H 0.118 0.882 48 H 0.217 0.783 49 H 0.159 0.841 50 H 0.240 0.760 51 H 0.175 0.825 52 H 0.124 0.876 53 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.013 3.304 -2.087 5.601 hybrid contribution 1.122 0.510 0.632 1.384 sum -2.891 3.813 -1.456 5.002 Atomic orbital electron populations 1.21535 0.94309 1.01892 1.01605 1.26003 1.00370 1.02859 1.13620 1.21605 1.01212 0.95038 1.02014 1.21539 1.00950 1.00186 0.96700 0.75986 0.62150 0.52896 0.63467 1.27141 1.06872 1.09688 1.18483 1.27151 1.25650 1.04775 1.04673 1.85349 1.79444 1.46207 1.48288 1.22287 0.99221 0.90805 0.87552 1.23293 1.01931 0.92028 0.95663 1.23223 1.01094 0.83540 0.92108 1.60025 1.85039 1.19846 1.23701 1.00255 0.72954 0.71494 0.72205 1.93546 1.64711 1.80411 1.58713 1.93544 1.85412 1.82199 1.36082 1.29932 1.26087 1.22522 1.00446 1.26081 0.99317 0.96565 1.00137 1.84451 1.06382 1.63372 1.04052 1.25226 1.01302 1.11410 0.96755 1.24497 0.97907 0.95863 0.96921 1.86520 1.91017 1.23241 1.34545 0.85955 0.79061 0.82453 0.78698 1.16198 1.16093 1.15863 1.19655 0.90197 0.97782 1.00492 1.23072 1.02694 0.81925 0.92079 0.92193 0.93763 0.92171 0.91933 0.93454 0.91915 0.92103 0.93775 0.92204 0.90714 0.90882 0.91178 0.91159 0.90876 0.90778 0.90225 0.90663 0.86557 0.89012 0.88206 0.78265 0.84132 0.76042 0.82536 0.87632 0.88331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.22 7.85 71.98 0.56 0.78 16 2 C -0.39 1.02 0.53 -10.80 -0.01 1.01 16 3 C -0.14 0.36 7.85 71.98 0.56 0.92 16 4 C -0.14 0.21 7.85 71.98 0.56 0.78 16 5 Si 1.33 -7.63 8.45 68.60 0.58 -7.05 16 6 C -0.52 2.55 8.50 113.37 0.96 3.52 16 7 C -0.52 2.47 8.50 113.37 0.96 3.43 16 8 O -0.63 3.17 8.56 -148.98 -1.28 1.89 16 9 C 0.08 -0.64 4.96 71.98 0.36 -0.29 16 10 C -0.11 0.82 4.19 -10.13 -0.04 0.78 16 11 C 0.12 -0.64 8.55 86.42 0.74 0.10 16 12 N -1.04 1.65 4.12 -528.70 -2.18 -0.53 16 13 S 2.74 13.36 6.29 -56.49 -0.36 13.01 16 14 O -0.98 -10.10 17.61 -128.00 -2.25 -12.35 16 15 O -0.98 -10.85 17.60 -128.00 -2.25 -13.10 16 16 C -0.69 -1.57 5.89 21.22 0.12 -1.45 16 17 C -0.08 0.01 10.70 66.72 0.71 0.72 16 18 S 0.15 -0.15 20.58 -56.49 -1.16 -1.31 16 19 C -0.23 -0.01 5.72 24.59 0.14 0.13 16 20 C -0.04 0.09 2.96 71.24 0.21 0.30 16 21 O -0.55 0.09 12.85 -148.98 -1.92 -1.82 16 22 Si 0.92 -2.32 26.25 68.60 1.80 -0.52 16 23 H -0.24 0.46 7.11 99.48 0.71 1.16 16 24 H -0.24 0.08 7.11 99.48 0.71 0.78 16 25 H -0.24 0.50 7.11 99.48 0.71 1.21 16 26 C -0.05 -0.11 9.56 21.22 0.20 0.09 16 27 C 0.13 -0.84 8.54 86.49 0.74 -0.10 16 28 H 0.06 -0.17 7.79 -2.39 -0.02 -0.19 16 29 H 0.04 0.00 8.14 -2.39 -0.02 -0.02 16 30 H 0.06 -0.10 7.97 -2.38 -0.02 -0.12 16 31 H 0.06 -0.24 7.79 -2.39 -0.02 -0.26 16 32 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 33 H 0.06 -0.25 7.79 -2.39 -0.02 -0.26 16 34 H 0.06 -0.11 7.97 -2.38 -0.02 -0.12 16 35 H 0.04 0.00 8.14 -2.38 -0.02 -0.02 16 36 H 0.06 -0.16 7.79 -2.39 -0.02 -0.18 16 37 H 0.07 -0.47 7.48 -2.38 -0.02 -0.49 16 38 H 0.07 -0.33 7.79 -2.38 -0.02 -0.35 16 39 H 0.07 -0.29 7.79 -2.39 -0.02 -0.30 16 40 H 0.07 -0.27 7.79 -2.39 -0.02 -0.29 16 41 H 0.07 -0.32 7.79 -2.39 -0.02 -0.34 16 42 H 0.07 -0.45 7.48 -2.39 -0.02 -0.46 16 43 H 0.08 -0.91 7.21 -2.39 -0.02 -0.92 16 44 H 0.08 -0.82 6.95 -2.39 -0.02 -0.84 16 45 H 0.12 -0.89 8.14 -2.39 -0.02 -0.91 16 46 H 0.09 -0.58 8.14 -2.38 -0.02 -0.60 16 47 H 0.10 -0.70 7.92 -2.39 -0.02 -0.72 16 48 H 0.20 -0.79 8.00 -2.91 -0.02 -0.82 16 49 H 0.14 -0.71 7.96 -2.38 -0.02 -0.73 16 50 H 0.39 -2.36 8.70 -74.06 -0.64 -3.00 16 51 H 0.16 0.30 7.96 -2.91 -0.02 0.27 16 52 H 0.11 -1.00 8.10 -2.39 -0.02 -1.02 16 53 H 0.10 -0.85 8.14 -2.39 -0.02 -0.87 16 Total: 0.00 -20.34 450.67 -1.21 -21.55 By element: Atomic # 1 Polarization: -11.49 SS G_CDS: 1.00 Total: -10.49 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 6.80 Total: 10.73 kcal Atomic # 7 Polarization: 1.65 SS G_CDS: -2.18 Total: -0.53 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -7.70 Total: -25.38 kcal Atomic # 14 Polarization: -9.95 SS G_CDS: 2.38 Total: -7.57 kcal Atomic # 16 Polarization: 13.21 SS G_CDS: -1.52 Total: 11.69 kcal Total: -20.34 -1.21 -21.55 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14483510_15065232.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.875 kcal (2) G-P(sol) polarization free energy of solvation -20.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds