Wall clock time and date at job start Mon Mar 8 2021 10:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33390 * 125.19974 * 2 1 4 4 C 1.50697 * 122.54012 * 0.02562 * 3 2 1 5 5 O 1.42907 * 109.47082 * 68.37569 * 4 3 2 6 6 Si 1.86291 * 109.47404 * 308.37163 * 4 3 2 7 7 C 1.38428 * 114.92034 * 180.02562 * 3 2 1 8 8 S 1.76197 * 122.54100 * 179.97438 * 7 3 2 9 9 O 1.42101 * 106.39897 * 27.59138 * 8 7 3 10 10 O 1.42103 * 106.40204 * 160.51350 * 8 7 3 11 11 N 1.65603 * 107.21879 * 274.05426 * 8 7 3 12 12 C 1.46504 * 120.00065 * 64.99701 * 11 8 7 13 13 H 1.08998 * 109.47046 * 335.00236 * 12 11 8 14 14 C 1.52993 * 109.46853 * 95.00371 * 12 11 8 15 15 C 1.52999 * 109.47188 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.46957 * 299.99750 * 15 14 12 17 17 H 1.08998 * 109.47268 * 299.99774 * 16 15 14 18 18 C 1.52995 * 109.47299 * 179.97438 * 16 15 14 19 19 C 1.52999 * 109.47053 * 59.99873 * 18 16 15 20 20 C 1.53001 * 109.47330 * 180.02562 * 18 16 15 21 21 C 1.53007 * 109.47046 * 60.00129 * 16 15 14 22 22 C 1.52995 * 109.46918 * 215.00067 * 12 11 8 23 23 C 1.33387 * 114.91649 * 0.02562 * 7 3 2 24 24 C 1.50704 * 125.20079 * 179.97438 * 23 7 3 25 25 S 1.75877 * 125.20522 * 180.32742 * 2 1 3 26 26 H 1.09004 * 109.47224 * 93.01728 * 1 2 3 27 27 H 1.08997 * 109.46985 * 213.01318 * 1 2 3 28 28 H 1.09003 * 109.46882 * 333.01356 * 1 2 3 29 29 H 1.09008 * 109.47024 * 188.36973 * 4 3 2 30 30 H 0.96693 * 114.00080 * 55.36337 * 5 4 3 31 31 H 1.48502 * 110.00194 * 308.69837 * 6 4 3 32 32 H 1.48504 * 109.99925 * 70.01269 * 6 4 3 33 33 H 0.96997 * 119.99884 * 245.00571 * 11 8 7 34 34 H 1.09004 * 109.47118 * 299.99530 * 14 12 11 35 35 H 1.08999 * 109.47312 * 59.99539 * 14 12 11 36 36 H 1.08998 * 109.47242 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.47439 * 59.99533 * 15 14 12 38 38 H 1.09008 * 109.47171 * 299.99676 * 18 16 15 39 39 H 1.09004 * 109.47154 * 180.02562 * 19 18 16 40 40 H 1.08996 * 109.47097 * 300.00204 * 19 18 16 41 41 H 1.08998 * 109.47130 * 60.00419 * 19 18 16 42 42 H 1.08998 * 109.47413 * 59.99798 * 20 18 16 43 43 H 1.09004 * 109.47189 * 180.02562 * 20 18 16 44 44 H 1.08998 * 109.46930 * 299.99628 * 20 18 16 45 45 H 1.08996 * 109.46971 * 180.02562 * 21 16 15 46 46 H 1.08998 * 109.47377 * 59.99712 * 21 16 15 47 47 H 1.09003 * 109.47719 * 300.00308 * 22 12 11 48 48 H 1.09006 * 109.47071 * 60.00626 * 22 12 11 49 49 H 1.08997 * 109.47111 * 89.99470 * 24 23 7 50 50 H 1.09003 * 109.46937 * 329.99585 * 24 23 7 51 51 H 1.08995 * 109.47245 * 209.99866 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 1.7051 2.4847 0.0006 5 8 1.0656 2.7371 1.2534 6 14 0.4603 2.6468 -1.3759 7 6 3.6380 0.8430 -0.0006 8 16 4.8356 2.1354 -0.0013 9 8 4.2224 3.2509 0.6301 10 8 6.0512 1.5563 0.4530 11 7 5.0861 2.5707 -1.5794 12 6 3.9992 3.1747 -2.3540 13 1 3.0407 2.8689 -1.9347 14 6 4.1180 4.6989 -2.2966 15 6 2.9826 5.3299 -3.1050 16 6 3.0735 4.8657 -4.5601 17 1 4.0318 5.1715 -4.9798 18 6 1.9377 5.4961 -5.3684 19 6 2.0559 7.0204 -5.3110 20 6 2.0283 5.0314 -6.8234 21 6 2.9546 3.3413 -4.6175 22 6 4.0908 2.7105 -3.8089 23 6 3.9751 -0.4476 -0.0016 24 6 5.3861 -0.9770 -0.0029 25 16 2.5210 -1.4371 -0.0082 26 1 -0.3634 -0.0541 -1.0263 27 1 -0.3633 -0.8617 0.5599 28 1 -0.3633 0.9158 0.4664 29 1 2.5084 3.2061 -0.1491 30 1 1.6372 2.6010 2.0213 31 1 1.0553 2.1850 -2.6558 32 1 -0.7514 1.8477 -1.0617 33 1 5.9524 2.4256 -1.9908 34 1 4.0528 5.0297 -1.2600 35 1 5.0766 5.0047 -2.7158 36 1 3.0670 6.4158 -3.0637 37 1 2.0242 5.0241 -2.6853 38 1 0.9795 5.1898 -4.9486 39 1 1.2465 7.4696 -5.8865 40 1 1.9911 7.3511 -4.2744 41 1 3.0140 7.3266 -5.7309 42 1 1.9438 3.9455 -6.8639 43 1 1.2193 5.4809 -7.3994 44 1 2.9864 5.3373 -7.2435 45 1 3.0198 3.0107 -5.6541 46 1 1.9963 3.0355 -4.1978 47 1 5.0493 3.0162 -4.2283 48 1 4.0060 1.6245 -3.8498 49 1 5.7270 -1.1051 1.0244 50 1 6.0385 -0.2710 -0.5169 51 1 5.4133 -1.9375 -0.5172 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_14589130_15065288.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:15:37 Heat of formation + Delta-G solvation = -87.341313 kcal Electronic energy + Delta-G solvation = -33303.456541 eV Core-core repulsion = 29229.410913 eV Total energy + Delta-G solvation = -4074.045628 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.142 amu Computer time = 2.62 seconds Orbital eigenvalues (eV) -40.65332 -40.23142 -38.54144 -37.16939 -36.97293 -36.89889 -34.37358 -33.83033 -31.98819 -30.99239 -29.13446 -28.08431 -28.02225 -26.05302 -23.89735 -23.51641 -23.27200 -21.52095 -20.89040 -20.60834 -19.97900 -19.06745 -18.53085 -18.14916 -17.78215 -16.85884 -16.55302 -16.20757 -15.87810 -15.41122 -15.38428 -15.29135 -15.24800 -14.88691 -14.70350 -14.58432 -14.49915 -14.42690 -14.32795 -13.94343 -13.69182 -13.52577 -13.47955 -13.39845 -13.20981 -13.13437 -12.97486 -12.83426 -12.76509 -12.69633 -12.53512 -12.35041 -12.21217 -12.08504 -11.86317 -11.75474 -11.56201 -11.43271 -11.24683 -11.14854 -10.96498 -10.67707 -10.47306 -10.07814 -9.60977 -4.89774 -0.80392 -0.49326 0.30056 0.63149 0.79104 1.31291 1.57815 1.91744 1.95283 2.61454 3.17751 3.38706 3.48311 3.57852 3.63258 3.66684 3.83049 3.90759 3.94553 4.00836 4.04113 4.13039 4.15544 4.21127 4.27459 4.32308 4.36885 4.41121 4.46736 4.53075 4.55034 4.57962 4.59809 4.65790 4.73890 4.77132 4.83003 4.91718 4.92810 4.97095 4.99816 5.03397 5.06993 5.10054 5.13434 5.16229 5.16859 5.24173 5.33319 5.38570 5.49418 5.57059 5.81354 6.62512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.171 4.171 3 C -0.079 4.079 4 C -0.091 4.091 5 O -0.527 6.527 6 Si 0.705 3.295 7 C -0.688 4.688 8 S 2.702 3.298 9 O -0.943 6.943 10 O -0.952 6.952 11 N -1.111 6.111 12 C 0.146 3.854 13 H 0.079 0.921 14 C -0.141 4.141 15 C -0.119 4.119 16 C -0.085 4.085 17 H 0.074 0.926 18 C -0.093 4.093 19 C -0.151 4.151 20 C -0.151 4.151 21 C -0.123 4.123 22 C -0.124 4.124 23 C -0.047 4.047 24 C -0.114 4.114 25 S 0.158 5.842 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.370 0.630 31 H -0.237 1.237 32 H -0.229 1.229 33 H 0.420 0.580 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.073 0.927 46 H 0.068 0.932 47 H 0.074 0.926 48 H 0.067 0.933 49 H 0.100 0.900 50 H 0.101 0.899 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.764 -0.215 -4.400 4.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.289 4.289 3 C -0.090 4.090 4 C -0.202 4.202 5 O -0.332 6.332 6 Si 0.602 3.398 7 C -0.787 4.787 8 S 2.790 3.210 9 O -0.933 6.933 10 O -0.942 6.942 11 N -0.871 5.871 12 C 0.040 3.960 13 H 0.097 0.903 14 C -0.180 4.180 15 C -0.157 4.157 16 C -0.103 4.103 17 H 0.092 0.908 18 C -0.112 4.112 19 C -0.208 4.208 20 C -0.208 4.208 21 C -0.161 4.161 22 C -0.163 4.163 23 C -0.168 4.168 24 C -0.172 4.172 25 S 0.424 5.576 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.218 0.782 31 H -0.162 1.162 32 H -0.153 1.153 33 H 0.255 0.745 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.091 0.909 46 H 0.087 0.913 47 H 0.093 0.907 48 H 0.086 0.914 49 H 0.119 0.881 50 H 0.119 0.881 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.817 -1.732 -4.567 5.211 hybrid contribution 1.377 -0.360 0.543 1.523 sum -0.440 -2.092 -4.024 4.557 Atomic orbital electron populations 1.20845 0.87126 1.04935 1.03016 1.24479 1.00382 0.95102 1.08908 1.18640 0.90217 0.97170 1.02925 1.25738 1.07001 0.91343 0.96137 1.86631 1.41044 1.91316 1.14213 0.94232 0.80059 0.90913 0.74576 1.29571 1.11886 1.13554 1.23642 1.01737 0.73101 0.73565 0.72595 1.93551 1.77289 1.49324 1.73101 1.93601 1.43180 1.78599 1.78856 1.55650 1.21627 1.77090 1.32716 1.21050 0.88409 0.93803 0.92743 0.90319 1.22126 1.00159 0.93547 1.02166 1.21702 0.98462 1.01132 0.94382 1.21272 0.99219 0.94495 0.95345 0.90795 1.21155 0.98747 0.95660 0.95622 1.21912 1.01771 0.95086 1.02076 1.21913 1.01823 1.01194 0.95906 1.21776 0.98558 0.95306 1.00424 1.21850 1.00359 1.00706 0.93432 1.24615 1.00764 0.94988 0.96473 1.20972 0.88167 1.02620 1.05476 1.84422 0.95260 1.08576 1.69347 0.90472 0.90371 0.88174 0.87989 0.78231 1.16195 1.15266 0.74453 0.89970 0.90794 0.90417 0.91396 0.90964 0.92740 0.92099 0.92765 0.92506 0.92724 0.92742 0.90862 0.91308 0.90710 0.91422 0.88126 0.88082 0.89958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.10 8.06 36.01 0.29 0.19 16 2 C -0.17 -0.35 6.10 -36.00 -0.22 -0.57 16 3 C -0.08 -0.19 4.23 -106.25 -0.45 -0.64 16 4 C -0.09 -0.19 1.66 36.00 0.06 -0.13 16 5 O -0.53 -1.31 11.85 -35.23 -0.42 -1.72 16 6 Si 0.70 0.25 27.10 -169.99 -4.61 -4.35 16 7 C -0.69 -1.49 5.74 -41.21 -0.24 -1.73 16 8 S 2.70 5.56 5.25 -107.50 -0.56 5.00 16 9 O -0.94 -3.69 14.08 -57.17 -0.80 -4.49 16 10 O -0.95 -3.58 14.82 -57.17 -0.85 -4.43 16 11 N -1.11 0.77 5.47 -4.90 -0.03 0.75 16 12 C 0.15 -0.10 2.42 -67.93 -0.16 -0.27 16 13 H 0.08 -0.01 2.76 -51.93 -0.14 -0.15 16 14 C -0.14 0.14 5.53 -26.73 -0.15 -0.01 16 15 C -0.12 0.22 4.85 -26.73 -0.13 0.09 16 16 C -0.08 0.17 1.78 -90.62 -0.16 0.01 16 17 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 18 C -0.09 0.17 2.50 -90.62 -0.23 -0.05 16 19 C -0.15 0.27 8.84 37.16 0.33 0.60 16 20 C -0.15 0.25 8.84 37.16 0.33 0.58 16 21 C -0.12 0.21 4.85 -26.70 -0.13 0.08 16 22 C -0.12 0.21 5.45 -26.70 -0.15 0.07 16 23 C -0.05 -0.07 6.50 -36.00 -0.23 -0.30 16 24 C -0.11 0.02 9.13 36.01 0.33 0.35 16 25 S 0.16 0.15 23.31 -107.50 -2.51 -2.35 16 26 H 0.08 0.04 6.96 -51.93 -0.36 -0.32 16 27 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 28 H 0.10 0.16 5.18 -51.93 -0.27 -0.11 16 29 H 0.10 0.20 3.39 -51.92 -0.18 0.03 16 30 H 0.37 0.35 9.03 45.56 0.41 0.76 16 31 H -0.24 -0.11 5.49 56.52 0.31 0.20 16 32 H -0.23 -0.29 4.98 56.52 0.28 -0.01 16 33 H 0.42 -1.21 8.84 -34.47 -0.30 -1.52 16 34 H 0.08 0.01 7.64 -51.93 -0.40 -0.39 16 35 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 36 H 0.08 -0.17 6.43 -51.93 -0.33 -0.51 16 37 H 0.07 -0.15 7.33 -51.93 -0.38 -0.53 16 38 H 0.07 -0.14 8.14 -51.92 -0.42 -0.56 16 39 H 0.05 -0.09 8.14 -51.93 -0.42 -0.51 16 40 H 0.06 -0.13 6.43 -51.93 -0.33 -0.46 16 41 H 0.05 -0.08 8.14 -51.93 -0.42 -0.51 16 42 H 0.06 -0.10 6.43 -51.93 -0.33 -0.43 16 43 H 0.05 -0.08 8.14 -51.93 -0.42 -0.50 16 44 H 0.05 -0.08 8.14 -51.93 -0.42 -0.50 16 45 H 0.07 -0.15 6.43 -51.93 -0.33 -0.48 16 46 H 0.07 -0.08 6.62 -51.93 -0.34 -0.42 16 47 H 0.07 -0.19 8.14 -51.93 -0.42 -0.61 16 48 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 49 H 0.10 -0.03 8.14 -51.93 -0.42 -0.45 16 50 H 0.10 -0.03 6.08 -51.93 -0.32 -0.34 16 51 H 0.08 -0.17 8.14 -51.93 -0.42 -0.60 16 LS Contribution 386.07 15.07 5.82 5.82 Total: 0.00 -5.58 386.07 -12.96 -18.54 By element: Atomic # 1 Polarization: -2.92 SS G_CDS: -8.10 Total: -11.01 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -0.91 Total: -1.74 kcal Atomic # 7 Polarization: 0.77 SS G_CDS: -0.03 Total: 0.75 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -2.07 Total: -10.65 kcal Atomic # 14 Polarization: 0.25 SS G_CDS: -4.61 Total: -4.35 kcal Atomic # 16 Polarization: 5.72 SS G_CDS: -3.07 Total: 2.64 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -5.58 -12.96 -18.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14589130_15065288.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.800 kcal (2) G-P(sol) polarization free energy of solvation -5.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.62 seconds