Wall clock time and date at job start Mon Mar 8 2021 10:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33390 * 125.19974 * 2 1 4 4 C 1.50697 * 122.54012 * 0.02562 * 3 2 1 5 5 O 1.42907 * 109.47082 * 68.37569 * 4 3 2 6 6 Si 1.86291 * 109.47404 * 308.37163 * 4 3 2 7 7 C 1.38428 * 114.92034 * 180.02562 * 3 2 1 8 8 S 1.76197 * 122.54100 * 179.97438 * 7 3 2 9 9 O 1.42101 * 106.39897 * 27.59138 * 8 7 3 10 10 O 1.42103 * 106.40204 * 160.51350 * 8 7 3 11 11 N 1.65603 * 107.21879 * 274.05426 * 8 7 3 12 12 C 1.46504 * 120.00065 * 64.99701 * 11 8 7 13 13 H 1.08998 * 109.47046 * 335.00236 * 12 11 8 14 14 C 1.52993 * 109.46853 * 95.00371 * 12 11 8 15 15 C 1.52999 * 109.47188 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.46957 * 299.99750 * 15 14 12 17 17 H 1.08998 * 109.47268 * 299.99774 * 16 15 14 18 18 C 1.52995 * 109.47299 * 179.97438 * 16 15 14 19 19 C 1.52999 * 109.47053 * 59.99873 * 18 16 15 20 20 C 1.53001 * 109.47330 * 180.02562 * 18 16 15 21 21 C 1.53007 * 109.47046 * 60.00129 * 16 15 14 22 22 C 1.52995 * 109.46918 * 215.00067 * 12 11 8 23 23 C 1.33387 * 114.91649 * 0.02562 * 7 3 2 24 24 C 1.50704 * 125.20079 * 179.97438 * 23 7 3 25 25 S 1.75877 * 125.20522 * 180.32742 * 2 1 3 26 26 H 1.09004 * 109.47224 * 93.01728 * 1 2 3 27 27 H 1.08997 * 109.46985 * 213.01318 * 1 2 3 28 28 H 1.09003 * 109.46882 * 333.01356 * 1 2 3 29 29 H 1.09008 * 109.47024 * 188.36973 * 4 3 2 30 30 H 0.96693 * 114.00080 * 55.36337 * 5 4 3 31 31 H 1.48502 * 110.00194 * 308.69837 * 6 4 3 32 32 H 1.48504 * 109.99925 * 70.01269 * 6 4 3 33 33 H 0.96997 * 119.99884 * 245.00571 * 11 8 7 34 34 H 1.09004 * 109.47118 * 299.99530 * 14 12 11 35 35 H 1.08999 * 109.47312 * 59.99539 * 14 12 11 36 36 H 1.08998 * 109.47242 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.47439 * 59.99533 * 15 14 12 38 38 H 1.09008 * 109.47171 * 299.99676 * 18 16 15 39 39 H 1.09004 * 109.47154 * 180.02562 * 19 18 16 40 40 H 1.08996 * 109.47097 * 300.00204 * 19 18 16 41 41 H 1.08998 * 109.47130 * 60.00419 * 19 18 16 42 42 H 1.08998 * 109.47413 * 59.99798 * 20 18 16 43 43 H 1.09004 * 109.47189 * 180.02562 * 20 18 16 44 44 H 1.08998 * 109.46930 * 299.99628 * 20 18 16 45 45 H 1.08996 * 109.46971 * 180.02562 * 21 16 15 46 46 H 1.08998 * 109.47377 * 59.99712 * 21 16 15 47 47 H 1.09003 * 109.47719 * 300.00308 * 22 12 11 48 48 H 1.09006 * 109.47071 * 60.00626 * 22 12 11 49 49 H 1.08997 * 109.47111 * 89.99470 * 24 23 7 50 50 H 1.09003 * 109.46937 * 329.99585 * 24 23 7 51 51 H 1.08995 * 109.47245 * 209.99866 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 1.7051 2.4847 0.0006 5 8 1.0656 2.7371 1.2534 6 14 0.4603 2.6468 -1.3759 7 6 3.6380 0.8430 -0.0006 8 16 4.8356 2.1354 -0.0013 9 8 4.2224 3.2509 0.6301 10 8 6.0512 1.5563 0.4530 11 7 5.0861 2.5707 -1.5794 12 6 3.9992 3.1747 -2.3540 13 1 3.0407 2.8689 -1.9347 14 6 4.1180 4.6989 -2.2966 15 6 2.9826 5.3299 -3.1050 16 6 3.0735 4.8657 -4.5601 17 1 4.0318 5.1715 -4.9798 18 6 1.9377 5.4961 -5.3684 19 6 2.0559 7.0204 -5.3110 20 6 2.0283 5.0314 -6.8234 21 6 2.9546 3.3413 -4.6175 22 6 4.0908 2.7105 -3.8089 23 6 3.9751 -0.4476 -0.0016 24 6 5.3861 -0.9770 -0.0029 25 16 2.5210 -1.4371 -0.0082 26 1 -0.3634 -0.0541 -1.0263 27 1 -0.3633 -0.8617 0.5599 28 1 -0.3633 0.9158 0.4664 29 1 2.5084 3.2061 -0.1491 30 1 1.6372 2.6010 2.0213 31 1 1.0553 2.1850 -2.6558 32 1 -0.7514 1.8477 -1.0617 33 1 5.9524 2.4256 -1.9908 34 1 4.0528 5.0297 -1.2600 35 1 5.0766 5.0047 -2.7158 36 1 3.0670 6.4158 -3.0637 37 1 2.0242 5.0241 -2.6853 38 1 0.9795 5.1898 -4.9486 39 1 1.2465 7.4696 -5.8865 40 1 1.9911 7.3511 -4.2744 41 1 3.0140 7.3266 -5.7309 42 1 1.9438 3.9455 -6.8639 43 1 1.2193 5.4809 -7.3994 44 1 2.9864 5.3373 -7.2435 45 1 3.0198 3.0107 -5.6541 46 1 1.9963 3.0355 -4.1978 47 1 5.0493 3.0162 -4.2283 48 1 4.0060 1.6245 -3.8498 49 1 5.7270 -1.1051 1.0244 50 1 6.0385 -0.2710 -0.5169 51 1 5.4133 -1.9375 -0.5172 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_14589130_15065288.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:15:35 Heat of formation + Delta-G solvation = -83.384466 kcal Electronic energy + Delta-G solvation = -33303.284959 eV Core-core repulsion = 29229.410913 eV Total energy + Delta-G solvation = -4073.874047 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.142 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.63775 -40.23541 -38.73115 -37.18709 -37.10113 -37.03657 -34.44453 -33.75273 -31.85680 -31.04090 -29.04701 -28.11669 -27.91878 -26.14190 -23.79719 -23.41742 -23.32621 -21.45141 -20.89029 -20.55775 -20.07713 -19.15697 -18.63250 -18.27388 -17.77900 -16.95781 -16.57166 -16.30012 -15.88297 -15.48443 -15.37207 -15.22632 -15.18589 -14.94825 -14.63728 -14.56390 -14.45005 -14.37063 -14.33802 -14.00706 -13.73189 -13.57918 -13.53513 -13.41623 -13.33574 -13.09434 -13.00357 -12.83756 -12.78523 -12.72197 -12.46307 -12.25034 -12.10956 -11.96929 -11.84142 -11.82012 -11.53774 -11.43822 -11.15476 -11.03950 -10.87015 -10.79684 -10.40491 -10.15778 -9.69920 -4.92634 -0.92185 -0.59904 0.22184 0.53084 0.67229 1.25295 1.53804 1.86782 1.87955 2.48395 3.05202 3.33970 3.53469 3.57270 3.70991 3.75294 3.77098 3.88075 4.00441 4.05155 4.10747 4.15601 4.18425 4.27755 4.32919 4.39914 4.44745 4.45769 4.46159 4.55882 4.60498 4.68133 4.73687 4.77049 4.77838 4.85817 4.87579 4.91374 4.99103 5.06408 5.08042 5.11848 5.17470 5.21743 5.23861 5.27225 5.29835 5.36777 5.46706 5.52347 5.64648 5.72334 5.94852 6.51512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.186 4.186 3 C -0.088 4.088 4 C -0.106 4.106 5 O -0.536 6.536 6 Si 0.741 3.259 7 C -0.699 4.699 8 S 2.712 3.288 9 O -0.966 6.966 10 O -0.973 6.973 11 N -1.101 6.101 12 C 0.142 3.858 13 H 0.073 0.927 14 C -0.141 4.141 15 C -0.121 4.121 16 C -0.080 4.080 17 H 0.075 0.925 18 C -0.093 4.093 19 C -0.151 4.151 20 C -0.151 4.151 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.051 4.051 24 C -0.120 4.120 25 S 0.180 5.820 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.373 0.627 31 H -0.237 1.237 32 H -0.241 1.241 33 H 0.431 0.569 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.051 0.949 40 H 0.063 0.937 41 H 0.051 0.949 42 H 0.058 0.942 43 H 0.051 0.949 44 H 0.052 0.948 45 H 0.078 0.922 46 H 0.063 0.937 47 H 0.086 0.914 48 H 0.067 0.933 49 H 0.101 0.899 50 H 0.101 0.899 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.684 -0.667 -5.308 5.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.304 4.304 3 C -0.099 4.099 4 C -0.216 4.216 5 O -0.342 6.342 6 Si 0.638 3.362 7 C -0.798 4.798 8 S 2.800 3.200 9 O -0.956 6.956 10 O -0.963 6.963 11 N -0.863 5.863 12 C 0.035 3.965 13 H 0.091 0.909 14 C -0.181 4.181 15 C -0.159 4.159 16 C -0.098 4.098 17 H 0.093 0.907 18 C -0.111 4.111 19 C -0.208 4.208 20 C -0.208 4.208 21 C -0.161 4.161 22 C -0.161 4.161 23 C -0.173 4.173 24 C -0.178 4.178 25 S 0.446 5.554 26 H 0.100 0.900 27 H 0.108 0.892 28 H 0.110 0.890 29 H 0.118 0.882 30 H 0.221 0.779 31 H -0.162 1.162 32 H -0.166 1.166 33 H 0.268 0.732 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.097 0.903 46 H 0.082 0.918 47 H 0.104 0.896 48 H 0.086 0.914 49 H 0.119 0.881 50 H 0.119 0.881 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.710 -2.177 -5.465 6.127 hybrid contribution 1.359 -0.242 0.839 1.615 sum -0.351 -2.419 -4.627 5.233 Atomic orbital electron populations 1.20877 0.86645 1.05082 1.03451 1.24688 1.01007 0.95617 1.09090 1.18732 0.90434 0.97452 1.03255 1.26021 1.07772 0.91315 0.96455 1.86598 1.41509 1.91404 1.14680 0.93829 0.78529 0.90281 0.73536 1.29549 1.11803 1.13850 1.24631 1.01248 0.72528 0.73167 0.73032 1.93523 1.77614 1.50281 1.74161 1.93569 1.44081 1.78901 1.79728 1.55412 1.22319 1.76787 1.31788 1.21158 0.88036 0.93994 0.93276 0.90945 1.22127 1.00941 0.93381 1.01605 1.21742 0.98314 1.01416 0.94428 1.21215 0.99217 0.94296 0.95066 0.90657 1.21151 0.98848 0.95601 0.95540 1.21912 1.01559 0.95135 1.02240 1.21910 1.01644 1.01301 0.95948 1.21787 0.98255 0.95445 1.00636 1.21852 1.01000 1.00715 0.92568 1.24887 1.01700 0.94959 0.95728 1.21104 0.87212 1.03684 1.05831 1.84283 0.94543 1.07701 1.68872 0.89976 0.89231 0.88961 0.88234 0.77854 1.16192 1.16608 0.73165 0.91283 0.90065 0.89924 0.91052 0.90862 0.92985 0.91765 0.92949 0.92312 0.92986 0.92863 0.90347 0.91847 0.89566 0.91404 0.88055 0.88074 0.87842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.23 8.06 71.24 0.57 0.34 16 2 C -0.19 -0.81 6.10 24.59 0.15 -0.66 16 3 C -0.09 -0.48 4.23 -20.92 -0.09 -0.57 16 4 C -0.11 -0.53 1.66 71.23 0.12 -0.41 16 5 O -0.54 -3.32 11.85 -148.98 -1.76 -5.08 16 6 Si 0.74 0.80 27.10 68.60 1.86 2.66 16 7 C -0.70 -3.44 5.74 21.22 0.12 -3.32 16 8 S 2.71 13.52 5.25 -56.49 -0.30 13.22 16 9 O -0.97 -8.90 14.08 -128.00 -1.80 -10.70 16 10 O -0.97 -8.09 14.82 -128.00 -1.90 -9.99 16 11 N -1.10 1.22 5.47 -169.40 -0.93 0.29 16 12 C 0.14 -0.19 2.42 44.99 0.11 -0.08 16 13 H 0.07 0.01 2.76 -2.39 -0.01 0.00 16 14 C -0.14 0.25 5.53 30.59 0.17 0.42 16 15 C -0.12 0.45 4.85 30.59 0.15 0.60 16 16 C -0.08 0.35 1.78 -10.79 -0.02 0.34 16 17 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 18 C -0.09 0.38 2.50 -10.79 -0.03 0.35 16 19 C -0.15 0.58 8.84 71.98 0.64 1.22 16 20 C -0.15 0.56 8.84 71.98 0.64 1.19 16 21 C -0.12 0.49 4.85 30.62 0.15 0.63 16 22 C -0.12 0.49 5.45 30.61 0.17 0.66 16 23 C -0.05 -0.15 6.50 24.59 0.16 0.01 16 24 C -0.12 0.07 9.13 71.24 0.65 0.72 16 25 S 0.18 0.30 23.31 -56.49 -1.32 -1.02 16 26 H 0.08 0.08 6.96 -2.39 -0.02 0.06 16 27 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 28 H 0.09 0.36 5.18 -2.39 -0.01 0.34 16 29 H 0.10 0.52 3.39 -2.38 -0.01 0.51 16 30 H 0.37 1.33 9.03 -74.06 -0.67 0.66 16 31 H -0.24 -0.20 5.49 99.48 0.55 0.35 16 32 H -0.24 -0.71 4.98 99.48 0.50 -0.21 16 33 H 0.43 -2.50 8.84 -96.75 -0.85 -3.35 16 34 H 0.07 0.08 7.64 -2.39 -0.02 0.06 16 35 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 36 H 0.08 -0.39 6.43 -2.39 -0.02 -0.40 16 37 H 0.07 -0.32 7.33 -2.39 -0.02 -0.33 16 38 H 0.07 -0.30 8.14 -2.38 -0.02 -0.32 16 39 H 0.05 -0.17 8.14 -2.39 -0.02 -0.19 16 40 H 0.06 -0.29 6.43 -2.39 -0.02 -0.30 16 41 H 0.05 -0.17 8.14 -2.39 -0.02 -0.19 16 42 H 0.06 -0.24 6.43 -2.39 -0.02 -0.25 16 43 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 44 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 45 H 0.08 -0.38 6.43 -2.39 -0.02 -0.39 16 46 H 0.06 -0.16 6.62 -2.39 -0.02 -0.18 16 47 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 16 48 H 0.07 -0.25 8.14 -2.38 -0.02 -0.27 16 49 H 0.10 -0.06 8.14 -2.39 -0.02 -0.08 16 50 H 0.10 -0.05 6.08 -2.39 -0.01 -0.07 16 51 H 0.10 -0.54 8.14 -2.39 -0.02 -0.56 16 Total: 0.00 -12.57 386.07 -3.38 -15.95 By element: Atomic # 1 Polarization: -5.89 SS G_CDS: -0.89 Total: -6.78 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: 3.65 Total: 1.44 kcal Atomic # 7 Polarization: 1.22 SS G_CDS: -0.93 Total: 0.29 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -5.46 Total: -25.77 kcal Atomic # 14 Polarization: 0.80 SS G_CDS: 1.86 Total: 2.66 kcal Atomic # 16 Polarization: 13.82 SS G_CDS: -1.61 Total: 12.21 kcal Total: -12.57 -3.38 -15.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14589130_15065288.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.439 kcal (2) G-P(sol) polarization free energy of solvation -12.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds