Wall clock time and date at job start Mon Mar 8 2021 09:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33391 * 125.20522 * 2 1 4 4 C 1.50699 * 122.53805 * 359.97438 * 3 2 1 5 5 O 1.42897 * 109.47149 * 306.24964 * 4 3 2 6 6 Si 1.86301 * 109.47231 * 66.24671 * 4 3 2 7 7 C 1.38429 * 114.92178 * 180.24658 * 3 2 1 8 8 S 1.76194 * 122.53931 * 179.73036 * 7 3 2 9 9 O 1.42102 * 106.40102 * 29.03071 * 8 7 3 10 10 O 1.42100 * 106.40319 * 161.94719 * 8 7 3 11 11 N 1.65598 * 107.21856 * 275.49043 * 8 7 3 12 12 C 1.46500 * 120.00055 * 62.80400 * 11 8 7 13 13 H 1.09006 * 112.84684 * 345.07159 * 12 11 8 14 14 C 1.53783 * 113.61603 * 116.37658 * 12 11 8 15 15 C 1.53779 * 87.07910 * 89.11546 * 14 12 11 16 16 H 1.08999 * 113.69218 * 270.86924 * 15 14 12 17 17 C 1.52999 * 113.61142 * 139.98107 * 15 14 12 18 18 N 1.46511 * 109.47246 * 87.50328 * 17 15 14 19 19 C 1.36880 * 126.39317 * 89.99754 * 18 17 15 20 20 C 1.34672 * 106.81358 * 180.02562 * 19 18 17 21 21 N 1.34129 * 108.02195 * 359.97438 * 20 19 18 22 22 C 1.30504 * 109.25203 * 359.73109 * 21 20 19 23 23 C 1.53778 * 87.08251 * 25.43362 * 15 14 12 24 24 C 1.33385 * 114.91880 * 359.49274 * 7 3 2 25 25 C 1.50699 * 125.20341 * 180.20897 * 24 7 3 26 26 S 1.75882 * 125.20130 * 179.97438 * 2 1 3 27 27 H 1.09006 * 109.46985 * 85.27178 * 1 2 3 28 28 H 1.08998 * 109.47449 * 205.26664 * 1 2 3 29 29 H 1.08998 * 109.47465 * 325.27345 * 1 2 3 30 30 H 1.09003 * 109.47066 * 186.24727 * 4 3 2 31 31 H 0.96694 * 114.00482 * 56.57605 * 5 4 3 32 32 H 1.48503 * 109.99858 * 63.68785 * 6 4 3 33 33 H 1.48499 * 110.00299 * 185.00492 * 6 4 3 34 34 H 0.97002 * 120.00004 * 242.80375 * 11 8 7 35 35 H 1.08994 * 113.61491 * 203.66598 * 14 12 11 36 36 H 1.09002 * 113.61389 * 334.56801 * 14 12 11 37 37 H 1.08995 * 109.47179 * 207.49869 * 17 15 14 38 38 H 1.08997 * 109.47450 * 327.50682 * 17 15 14 39 39 H 1.07993 * 126.59610 * 0.03576 * 19 18 17 40 40 H 1.07996 * 125.99106 * 180.02562 * 20 19 18 41 41 H 1.08001 * 125.64751 * 180.29462 * 22 21 20 42 42 H 1.08998 * 113.61643 * 220.01454 * 23 15 14 43 43 H 1.09004 * 113.61256 * 89.11444 * 23 15 14 44 44 H 1.08999 * 109.47474 * 185.41308 * 25 24 7 45 45 H 1.08998 * 109.46984 * 305.41392 * 25 24 7 46 46 H 1.08998 * 109.47078 * 65.41315 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 1.7052 2.4846 -0.0006 5 8 0.7879 2.6235 -1.0874 6 14 0.8146 2.7918 1.6067 7 6 3.6380 0.8428 -0.0054 8 16 4.8356 2.1351 -0.0134 9 8 4.2370 3.2410 0.6484 10 8 6.0608 1.5494 0.4050 11 7 5.0510 2.5942 -1.5899 12 6 3.9335 3.1655 -2.3456 13 1 2.9693 3.0015 -1.8644 14 6 4.1661 4.6214 -2.7829 15 6 4.8081 4.0526 -4.0593 16 1 5.8787 3.8698 -3.9670 17 6 4.4451 4.8296 -5.3264 18 7 5.3917 5.9325 -5.5110 19 6 6.5703 5.8836 -6.2054 20 6 7.1225 7.1091 -6.1223 21 7 6.3032 7.8852 -5.3974 22 6 5.2614 7.1887 -5.0330 23 6 3.9475 2.7975 -3.8386 24 6 3.9751 -0.4477 0.0009 25 6 5.3860 -0.9771 0.0015 26 16 2.5208 -1.4372 0.0006 27 1 -0.3633 0.0847 -1.0242 28 1 -0.3634 -0.9293 0.4386 29 1 -0.3634 0.8446 0.5854 30 1 2.5131 3.2078 -0.1123 31 1 0.0700 1.9757 -1.0815 32 1 1.7752 2.7382 2.7379 33 1 0.1451 4.1169 1.5713 34 1 5.9170 2.4847 -2.0129 35 1 3.2450 5.1745 -2.9666 36 1 4.8659 5.1622 -2.1459 37 1 4.4920 4.1628 -6.1874 38 1 3.4357 5.2294 -5.2309 39 1 6.9787 5.0271 -6.7210 40 1 8.0602 7.4139 -6.5628 41 1 4.4336 7.5555 -4.4442 42 1 4.4708 1.8659 -4.0538 43 1 2.9666 2.8521 -4.3110 44 1 5.3667 -2.0631 -0.0896 45 1 5.9340 -0.5517 -0.8391 46 1 5.8778 -0.6995 0.9338 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_14687902_15065288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:45:30 Heat of formation + Delta-G solvation = 29.421036 kcal Electronic energy + Delta-G solvation = -32531.654858 eV Core-core repulsion = 28258.217419 eV Total energy + Delta-G solvation = -4273.437438 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.101 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -42.91028 -40.82485 -40.38646 -38.56039 -37.33465 -37.01933 -35.50808 -34.22628 -33.49124 -31.19254 -30.31606 -28.79451 -28.14816 -26.92206 -26.08308 -24.37834 -23.31618 -22.18558 -21.83087 -21.22898 -20.81147 -20.04893 -19.25367 -18.61467 -18.31937 -18.12207 -17.25589 -17.01325 -16.57855 -16.23331 -16.11364 -15.95884 -15.55852 -15.45047 -15.20192 -15.11294 -14.72510 -14.68978 -14.55285 -14.40820 -14.31413 -14.05580 -13.99970 -13.74372 -13.63680 -13.50553 -13.33027 -13.32365 -13.21095 -13.10936 -12.87890 -12.73557 -12.35162 -12.18975 -11.95621 -11.80651 -11.73581 -11.49312 -10.78709 -10.73339 -10.69830 -10.41573 -10.09109 -9.50648 -9.36974 -5.00957 -0.86832 -0.52651 0.28310 0.60139 0.71626 1.19239 1.33992 1.72297 1.84268 1.87795 2.11006 2.37420 2.55546 3.08886 3.16658 3.26183 3.30871 3.34156 3.46052 3.53831 3.58442 3.82407 3.84660 3.89440 3.91805 3.95276 4.01251 4.06439 4.08577 4.22705 4.23958 4.35022 4.38535 4.49353 4.50792 4.52099 4.60914 4.63573 4.72901 4.77603 4.83914 4.87233 4.88157 4.96908 5.09853 5.20948 5.37755 5.72102 5.89182 6.30599 6.33740 7.25267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.191 4.191 3 C -0.066 4.066 4 C -0.086 4.086 5 O -0.537 6.537 6 Si 0.674 3.326 7 C -0.688 4.688 8 S 2.705 3.295 9 O -0.950 6.950 10 O -0.950 6.950 11 N -1.096 6.096 12 C 0.115 3.885 13 H 0.121 0.879 14 C -0.147 4.147 15 C -0.129 4.129 16 H 0.098 0.902 17 C 0.113 3.887 18 N -0.457 5.457 19 C -0.059 4.059 20 C -0.030 4.030 21 N -0.497 5.497 22 C 0.183 3.817 23 C -0.132 4.132 24 C -0.045 4.045 25 C -0.111 4.111 26 S 0.170 5.830 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.148 0.852 31 H 0.374 0.626 32 H -0.246 1.246 33 H -0.241 1.241 34 H 0.419 0.581 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.172 0.828 40 H 0.168 0.832 41 H 0.202 0.798 42 H 0.080 0.920 43 H 0.101 0.899 44 H 0.080 0.920 45 H 0.092 0.908 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.515 -8.276 -2.980 10.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.309 4.309 3 C -0.077 4.077 4 C -0.197 4.197 5 O -0.344 6.344 6 Si 0.572 3.428 7 C -0.788 4.788 8 S 2.793 3.207 9 O -0.939 6.939 10 O -0.940 6.940 11 N -0.855 5.855 12 C 0.007 3.993 13 H 0.138 0.862 14 C -0.187 4.187 15 C -0.148 4.148 16 H 0.116 0.884 17 C -0.009 4.009 18 N -0.140 5.140 19 C -0.192 4.192 20 C -0.178 4.178 21 N -0.214 5.214 22 C -0.099 4.099 23 C -0.172 4.172 24 C -0.167 4.167 25 C -0.169 4.169 26 S 0.437 5.563 27 H 0.107 0.893 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.164 0.836 31 H 0.223 0.777 32 H -0.170 1.170 33 H -0.165 1.165 34 H 0.254 0.746 35 H 0.117 0.883 36 H 0.098 0.902 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.189 0.811 40 H 0.186 0.814 41 H 0.219 0.781 42 H 0.098 0.902 43 H 0.120 0.880 44 H 0.099 0.901 45 H 0.110 0.890 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.223 -7.792 -1.391 9.483 hybrid contribution 0.684 -0.017 -1.122 1.314 sum -4.538 -7.808 -2.512 9.374 Atomic orbital electron populations 1.20541 0.87115 1.03991 1.03417 1.24259 1.00304 0.95094 1.11223 1.18527 0.90565 0.96727 1.01833 1.25585 0.97622 0.94307 1.02196 1.86520 1.40744 1.59053 1.48090 0.95728 0.85361 0.85989 0.75675 1.29395 1.11713 1.13399 1.24317 1.01641 0.73162 0.73560 0.72347 1.93519 1.77899 1.50616 1.71898 1.93611 1.42397 1.78373 1.79621 1.55348 1.19619 1.77722 1.32799 1.21903 0.89486 0.94406 0.93468 0.86189 1.23547 1.01965 0.96521 0.96627 1.23033 1.00896 0.96683 0.94219 0.88370 1.21975 0.92431 0.87561 0.98969 1.45587 1.17664 1.11017 1.39738 1.22738 0.89781 1.01678 1.05011 1.22349 1.01380 0.90618 1.03412 1.70325 1.03294 1.32832 1.14987 1.25011 1.00599 0.81129 1.03157 1.23309 1.01153 0.97594 0.95127 1.24604 1.00934 0.94978 0.96138 1.20903 0.88153 1.01855 1.06014 1.84409 0.94771 1.08036 1.69097 0.89299 0.89635 0.89723 0.83604 0.77666 1.17021 1.16526 0.74557 0.88289 0.90168 0.88786 0.88400 0.81061 0.81444 0.78149 0.90157 0.88043 0.90117 0.88953 0.87349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.46 8.41 36.00 0.30 0.76 16 2 C -0.19 0.30 6.08 -36.01 -0.22 0.09 16 3 C -0.07 -0.02 4.20 -106.25 -0.45 -0.46 16 4 C -0.09 -0.07 1.23 36.00 0.04 -0.02 16 5 O -0.54 0.56 12.03 -35.23 -0.42 0.14 16 6 Si 0.67 0.65 29.80 -169.99 -5.07 -4.41 16 7 C -0.69 -0.65 5.82 -41.21 -0.24 -0.89 16 8 S 2.70 5.09 5.39 -107.50 -0.58 4.51 16 9 O -0.95 -4.44 14.62 -57.17 -0.84 -5.28 16 10 O -0.95 -3.32 14.91 -57.17 -0.85 -4.17 16 11 N -1.10 1.26 5.73 -4.20 -0.02 1.23 16 12 C 0.11 -0.19 4.29 -67.12 -0.29 -0.48 16 13 H 0.12 -0.12 4.06 -51.93 -0.21 -0.33 16 14 C -0.15 0.27 7.43 -25.92 -0.19 0.08 16 15 C -0.13 0.41 3.79 -89.81 -0.34 0.07 16 16 H 0.10 -0.23 8.12 -51.93 -0.42 -0.65 16 17 C 0.11 -0.37 5.99 -4.04 -0.02 -0.39 16 18 N -0.46 0.03 2.75 -118.58 -0.33 -0.30 16 19 C -0.06 -0.04 11.58 -16.56 -0.19 -0.23 16 20 C -0.03 -0.09 11.87 -17.81 -0.21 -0.30 16 21 N -0.50 -2.46 11.25 -14.67 -0.17 -2.63 16 22 C 0.18 0.34 12.56 -90.38 -1.14 -0.79 16 23 C -0.13 0.50 7.42 -25.92 -0.19 0.31 16 24 C -0.05 0.00 6.50 -36.00 -0.23 -0.23 16 25 C -0.11 0.13 8.62 36.01 0.31 0.44 16 26 S 0.17 -0.26 23.31 -107.50 -2.51 -2.77 16 27 H 0.09 -0.59 7.41 -51.93 -0.38 -0.97 16 28 H 0.08 -0.49 8.14 -51.93 -0.42 -0.91 16 29 H 0.08 -0.50 4.35 -51.93 -0.23 -0.73 16 30 H 0.15 0.32 3.25 -51.93 -0.17 0.15 16 31 H 0.37 -1.65 5.59 45.56 0.25 -1.40 16 32 H -0.25 -1.10 7.11 56.52 0.40 -0.70 16 33 H -0.24 -0.76 7.11 56.52 0.40 -0.36 16 34 H 0.42 -1.22 8.80 -34.47 -0.30 -1.52 16 35 H 0.10 -0.28 7.90 -51.93 -0.41 -0.69 16 36 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 37 H 0.09 -0.41 8.14 -51.93 -0.42 -0.83 16 38 H 0.10 -0.44 7.84 -51.93 -0.41 -0.84 16 39 H 0.17 -0.35 8.06 -52.49 -0.42 -0.78 16 40 H 0.17 0.21 8.06 -52.49 -0.42 -0.22 16 41 H 0.20 -0.21 8.06 -52.49 -0.42 -0.63 16 42 H 0.08 -0.33 8.14 -51.93 -0.42 -0.75 16 43 H 0.10 -0.48 8.10 -51.93 -0.42 -0.90 16 44 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 45 H 0.09 -0.18 7.75 -51.93 -0.40 -0.59 16 46 H 0.11 -0.03 7.31 -51.93 -0.38 -0.41 16 LS Contribution 385.16 15.07 5.80 5.80 Total: 0.00 -11.04 385.16 -14.09 -25.13 By element: Atomic # 1 Polarization: -9.12 SS G_CDS: -6.06 Total: -15.18 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -3.06 Total: -2.07 kcal Atomic # 7 Polarization: -1.18 SS G_CDS: -0.52 Total: -1.70 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -2.11 Total: -9.32 kcal Atomic # 14 Polarization: 0.65 SS G_CDS: -5.07 Total: -4.41 kcal Atomic # 16 Polarization: 4.83 SS G_CDS: -3.09 Total: 1.74 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -11.04 -14.09 -25.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14687902_15065288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.549 kcal (2) G-P(sol) polarization free energy of solvation -11.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds