Wall clock time and date at job start Mon Mar 8 2021 09:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86303 * 109.47288 * 2 1 4 4 C 1.50697 * 109.47414 * 119.99894 * 2 1 3 5 5 C 1.33394 * 122.53859 * 74.99701 * 4 2 1 6 6 S 1.76199 * 125.20338 * 0.02562 * 5 4 2 7 7 O 1.42100 * 106.39996 * 293.25518 * 6 5 4 8 8 O 1.42095 * 106.40262 * 66.17641 * 6 5 4 9 9 N 1.65597 * 107.21814 * 179.71674 * 6 5 4 10 10 C 1.46506 * 120.00064 * 65.00009 * 9 6 5 11 11 H 1.09006 * 112.84580 * 346.19486 * 10 9 6 12 12 C 1.53779 * 113.61349 * 117.50352 * 10 9 6 13 13 C 1.53779 * 87.07932 * 139.98426 * 12 10 9 14 14 H 1.08994 * 113.61899 * 89.11728 * 13 12 10 15 15 C 1.50704 * 113.68822 * 220.00924 * 13 12 10 16 16 N 1.30495 * 125.64868 * 192.22924 * 15 13 12 17 17 C 1.34130 * 109.25379 * 179.88920 * 16 15 13 18 18 C 1.34666 * 108.02417 * 0.36837 * 17 16 15 19 19 N 1.35046 * 125.64817 * 12.52949 * 15 13 12 20 20 C 1.53775 * 113.61256 * 215.00207 * 10 9 6 21 21 S 1.75883 * 109.59225 * 179.75777 * 5 4 2 22 22 C 1.75888 * 90.97383 * 0.22834 * 21 5 4 23 23 C 1.33396 * 109.58941 * 0.02562 * 22 21 5 24 24 H 0.96691 * 114.00308 * 300.00382 * 1 2 3 25 25 H 1.09003 * 109.47511 * 239.99908 * 2 1 3 26 26 H 1.48509 * 109.99814 * 299.99908 * 3 2 1 27 27 H 1.48500 * 109.99966 * 61.31286 * 3 2 1 28 28 H 0.96997 * 119.99782 * 245.00248 * 9 6 5 29 29 H 1.08999 * 113.60960 * 254.52717 * 12 10 9 30 30 H 1.08999 * 113.61700 * 25.42866 * 12 10 9 31 31 H 1.08004 * 125.99212 * 180.11263 * 17 16 15 32 32 H 1.07996 * 126.59875 * 179.73833 * 18 17 16 33 33 H 0.97003 * 126.39774 * 359.97438 * 19 15 13 34 34 H 1.08999 * 113.61757 * 334.55913 * 20 10 9 35 35 H 1.09002 * 113.61413 * 105.47306 * 20 10 9 36 36 H 1.07997 * 125.20424 * 180.02562 * 22 21 5 37 37 H 1.08004 * 122.53503 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.8961 -2.0378 1.3572 6 16 1.2762 -3.1577 0.1464 7 8 -0.1219 -2.9195 0.0580 8 8 2.1520 -3.0678 -0.9690 9 7 1.4523 -4.6868 0.7572 10 6 0.6992 -5.0916 1.9469 11 1 0.2517 -4.2477 2.4720 12 6 -0.2794 -6.2501 1.6918 13 6 0.1465 -6.8073 3.0603 14 1 -0.4533 -6.4333 3.8900 15 6 0.3046 -8.3058 3.0813 16 7 0.4343 -9.0420 4.1510 17 6 0.5490 -10.3290 3.7909 18 6 0.4962 -10.3919 2.4468 19 7 0.3411 -9.1087 1.9960 20 6 1.4716 -6.0508 2.8679 21 16 2.5701 -2.4996 2.9147 22 6 2.8644 -0.8138 3.3210 23 6 2.4606 -0.0346 2.3164 24 1 -0.3933 0.4417 0.7649 25 1 1.7924 -0.5138 -0.8900 26 1 1.5615 2.4679 -1.2086 27 1 1.5878 2.4586 1.2242 28 1 2.0541 -5.3144 0.3273 29 1 -1.3234 -5.9390 1.6528 30 1 0.0055 -6.8858 0.8535 31 1 0.6675 -11.1675 4.4613 32 1 0.5639 -11.2832 1.8407 33 1 0.2707 -8.8284 1.0701 34 1 2.2351 -6.6322 2.3512 35 1 1.8411 -5.5790 3.7784 36 1 3.3046 -0.4632 4.2427 37 1 2.5450 1.0418 2.3460 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_14772064_13652106.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:08:36 Heat of formation + Delta-G solvation = 30.713809 kcal Electronic energy + Delta-G solvation = -25468.066440 eV Core-core repulsion = 21661.297917 eV Total energy + Delta-G solvation = -3806.768523 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.054 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -43.10519 -40.33255 -40.11165 -38.13189 -37.22511 -36.82192 -34.60835 -33.42762 -31.54767 -30.46392 -28.09280 -27.01344 -25.98806 -24.44034 -22.76589 -21.86069 -21.77990 -20.88780 -20.07443 -19.85087 -19.01807 -18.61801 -18.02240 -17.32216 -16.74245 -16.67568 -16.39931 -15.97613 -15.93015 -15.83479 -15.36375 -15.05364 -14.75013 -14.43647 -14.30766 -14.08680 -14.05094 -13.76198 -13.65726 -13.59160 -13.09229 -12.99225 -12.69929 -12.61656 -12.30580 -12.29422 -12.24328 -11.91414 -11.66436 -10.98364 -10.96477 -10.78051 -10.76485 -10.49712 -9.76377 -9.35374 -5.06027 -0.74005 -0.73306 0.14300 0.51359 1.06251 1.10588 1.14743 1.47511 1.82111 1.86677 2.10411 2.17682 2.56897 3.11083 3.17757 3.21889 3.35744 3.37691 3.54065 3.57249 3.68038 3.85335 3.95361 4.04477 4.10265 4.26184 4.38675 4.45876 4.48738 4.49263 4.57447 4.66519 4.73031 4.75567 4.79627 4.94792 5.09270 5.18479 5.67058 5.79509 6.30040 6.35509 7.14362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.508 6.508 2 C -0.106 4.106 3 Si 0.710 3.290 4 C 0.008 3.992 5 C -0.769 4.769 6 S 2.713 3.287 7 O -0.924 6.924 8 O -0.948 6.948 9 N -1.106 6.106 10 C 0.124 3.876 11 H 0.121 0.879 12 C -0.147 4.147 13 C -0.024 4.024 14 H 0.127 0.873 15 C 0.219 3.781 16 N -0.485 5.485 17 C -0.027 4.027 18 C -0.055 4.055 19 N -0.566 5.566 20 C -0.133 4.133 21 S 0.209 5.791 22 C -0.161 4.161 23 C -0.164 4.164 24 H 0.379 0.621 25 H 0.127 0.873 26 H -0.248 1.248 27 H -0.253 1.253 28 H 0.422 0.578 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.171 0.829 32 H 0.178 0.822 33 H 0.418 0.582 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.179 0.821 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.422 -0.123 2.250 4.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.314 6.314 2 C -0.217 4.217 3 Si 0.609 3.391 4 C -0.009 4.009 5 C -0.969 4.969 6 S 2.797 3.203 7 O -0.914 6.914 8 O -0.938 6.938 9 N -0.865 5.865 10 C 0.017 3.983 11 H 0.139 0.861 12 C -0.187 4.187 13 C -0.045 4.045 14 H 0.145 0.855 15 C -0.045 4.045 16 N -0.205 5.205 17 C -0.175 4.175 18 C -0.189 4.189 19 N -0.170 5.170 20 C -0.173 4.173 21 S 0.475 5.525 22 C -0.299 4.299 23 C -0.194 4.194 24 H 0.227 0.773 25 H 0.145 0.855 26 H -0.172 1.172 27 H -0.177 1.177 28 H 0.258 0.742 29 H 0.111 0.889 30 H 0.105 0.895 31 H 0.188 0.812 32 H 0.195 0.805 33 H 0.256 0.744 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.197 0.803 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.114 -0.365 2.629 4.091 hybrid contribution -0.609 0.617 -0.834 1.203 sum 2.505 0.252 1.795 3.092 Atomic orbital electron populations 1.86783 1.15592 1.79982 1.49072 1.25346 0.85578 1.13505 0.97268 0.94578 0.91105 0.72511 0.80919 1.18970 0.94082 0.91311 0.96557 1.35739 1.26079 1.14427 1.20674 1.01713 0.74373 0.71779 0.72442 1.93670 1.29279 1.83926 1.84490 1.93630 1.67570 1.85679 1.46960 1.55635 1.58051 1.31133 1.41730 1.22359 0.93063 0.97466 0.85456 0.86076 1.23557 1.01550 0.97192 0.96409 1.20805 0.98980 0.85031 0.99658 0.85516 1.22820 1.05260 0.94399 0.82000 1.70242 1.19192 1.02904 1.28136 1.22418 1.07185 0.94703 0.93160 1.22826 1.11393 0.87622 0.97039 1.43276 1.56213 1.07330 1.10146 1.23503 0.96635 0.96721 1.00447 1.84118 1.55933 1.05981 1.06472 1.26152 1.03465 0.96744 1.03522 1.20342 1.03586 1.02122 0.93340 0.77332 0.85524 1.17212 1.17730 0.74199 0.88915 0.89534 0.81164 0.80478 0.74404 0.88791 0.89175 0.80326 0.82611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.51 -1.27 12.32 -35.88 -0.44 -1.72 16 2 C -0.11 -0.12 2.33 36.00 0.08 -0.04 16 3 Si 0.71 -0.78 30.47 -169.99 -5.18 -5.96 16 4 C 0.01 0.00 5.13 -106.25 -0.55 -0.54 16 5 C -0.77 -0.59 6.46 29.04 0.19 -0.41 16 6 S 2.71 5.23 5.02 -107.50 -0.54 4.69 16 7 O -0.92 -4.48 17.22 -59.41 -1.02 -5.51 16 8 O -0.95 -4.34 17.48 -57.17 -1.00 -5.34 16 9 N -1.11 2.10 5.60 -4.20 -0.02 2.07 16 10 C 0.12 -0.34 3.52 -67.12 -0.24 -0.57 16 11 H 0.12 -0.39 7.83 -51.93 -0.41 -0.79 16 12 C -0.15 0.42 7.36 -25.92 -0.19 0.23 16 13 C -0.02 0.05 4.29 -90.96 -0.39 -0.34 16 14 H 0.13 -0.30 8.14 -51.93 -0.42 -0.72 16 15 C 0.22 0.15 7.36 -155.41 -1.14 -1.00 16 16 N -0.49 -1.70 11.25 -10.81 -0.12 -1.82 16 17 C -0.03 -0.05 11.87 -17.81 -0.21 -0.26 16 18 C -0.06 0.03 12.04 -16.56 -0.20 -0.17 16 19 N -0.57 0.66 5.94 -10.23 -0.06 0.60 16 20 C -0.13 0.42 7.41 -25.92 -0.19 0.23 16 21 S 0.21 -0.39 22.08 -107.50 -2.37 -2.76 16 22 C -0.16 0.38 11.23 29.04 0.33 0.71 16 23 C -0.16 0.23 8.74 -41.21 -0.36 -0.13 16 24 H 0.38 -0.43 8.70 45.56 0.40 -0.03 16 25 H 0.13 0.21 7.23 -51.93 -0.38 -0.16 16 26 H -0.25 -0.48 7.11 56.52 0.40 -0.08 16 27 H -0.25 0.12 6.80 56.52 0.38 0.50 16 28 H 0.42 -1.65 8.94 -34.46 -0.31 -1.96 16 29 H 0.09 -0.25 8.14 -51.93 -0.42 -0.67 16 30 H 0.09 -0.35 6.65 -51.93 -0.35 -0.70 16 31 H 0.17 -0.02 8.06 -52.48 -0.42 -0.44 16 32 H 0.18 -0.61 8.06 -52.49 -0.42 -1.03 16 33 H 0.42 -1.63 7.54 -40.82 -0.31 -1.94 16 34 H 0.09 -0.31 8.09 -51.93 -0.42 -0.73 16 35 H 0.09 -0.34 8.14 -51.93 -0.42 -0.76 16 36 H 0.18 -0.90 8.06 -52.49 -0.42 -1.33 16 37 H 0.16 -0.49 5.54 -52.48 -0.29 -0.78 16 LS Contribution 338.12 15.07 5.10 5.10 Total: 0.00 -12.22 338.12 -12.35 -24.56 By element: Atomic # 1 Polarization: -7.81 SS G_CDS: -3.81 Total: -11.62 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -2.87 Total: -2.30 kcal Atomic # 7 Polarization: 1.05 SS G_CDS: -0.21 Total: 0.85 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: -2.46 Total: -12.56 kcal Atomic # 14 Polarization: -0.78 SS G_CDS: -5.18 Total: -5.96 kcal Atomic # 16 Polarization: 4.84 SS G_CDS: -2.91 Total: 1.93 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -12.22 -12.35 -24.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14772064_13652106.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.278 kcal (2) G-P(sol) polarization free energy of solvation -12.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds