Wall clock time and date at job start Mon Mar 8 2021 09:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86303 * 109.47288 * 2 1 4 4 C 1.50697 * 109.47414 * 119.99894 * 2 1 3 5 5 C 1.33394 * 122.53859 * 74.99701 * 4 2 1 6 6 S 1.76199 * 125.20338 * 0.02562 * 5 4 2 7 7 O 1.42100 * 106.39996 * 293.25518 * 6 5 4 8 8 O 1.42095 * 106.40262 * 66.17641 * 6 5 4 9 9 N 1.65597 * 107.21814 * 179.71674 * 6 5 4 10 10 C 1.46506 * 120.00064 * 65.00009 * 9 6 5 11 11 H 1.09006 * 112.84580 * 346.19486 * 10 9 6 12 12 C 1.53779 * 113.61349 * 117.50352 * 10 9 6 13 13 C 1.53779 * 87.07932 * 139.98426 * 12 10 9 14 14 H 1.08994 * 113.61899 * 89.11728 * 13 12 10 15 15 C 1.50704 * 113.68822 * 220.00924 * 13 12 10 16 16 N 1.30495 * 125.64868 * 192.22924 * 15 13 12 17 17 C 1.34130 * 109.25379 * 179.88920 * 16 15 13 18 18 C 1.34666 * 108.02417 * 0.36837 * 17 16 15 19 19 N 1.35046 * 125.64817 * 12.52949 * 15 13 12 20 20 C 1.53775 * 113.61256 * 215.00207 * 10 9 6 21 21 S 1.75883 * 109.59225 * 179.75777 * 5 4 2 22 22 C 1.75888 * 90.97383 * 0.22834 * 21 5 4 23 23 C 1.33396 * 109.58941 * 0.02562 * 22 21 5 24 24 H 0.96691 * 114.00308 * 300.00382 * 1 2 3 25 25 H 1.09003 * 109.47511 * 239.99908 * 2 1 3 26 26 H 1.48509 * 109.99814 * 299.99908 * 3 2 1 27 27 H 1.48500 * 109.99966 * 61.31286 * 3 2 1 28 28 H 0.96997 * 119.99782 * 245.00248 * 9 6 5 29 29 H 1.08999 * 113.60960 * 254.52717 * 12 10 9 30 30 H 1.08999 * 113.61700 * 25.42866 * 12 10 9 31 31 H 1.08004 * 125.99212 * 180.11263 * 17 16 15 32 32 H 1.07996 * 126.59875 * 179.73833 * 18 17 16 33 33 H 0.97003 * 126.39774 * 359.97438 * 19 15 13 34 34 H 1.08999 * 113.61757 * 334.55913 * 20 10 9 35 35 H 1.09002 * 113.61413 * 105.47306 * 20 10 9 36 36 H 1.07997 * 125.20424 * 180.02562 * 22 21 5 37 37 H 1.08004 * 122.53503 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.8961 -2.0378 1.3572 6 16 1.2762 -3.1577 0.1464 7 8 -0.1219 -2.9195 0.0580 8 8 2.1520 -3.0678 -0.9690 9 7 1.4523 -4.6868 0.7572 10 6 0.6992 -5.0916 1.9469 11 1 0.2517 -4.2477 2.4720 12 6 -0.2794 -6.2501 1.6918 13 6 0.1465 -6.8073 3.0603 14 1 -0.4533 -6.4333 3.8900 15 6 0.3046 -8.3058 3.0813 16 7 0.4343 -9.0420 4.1510 17 6 0.5490 -10.3290 3.7909 18 6 0.4962 -10.3919 2.4468 19 7 0.3411 -9.1087 1.9960 20 6 1.4716 -6.0508 2.8679 21 16 2.5701 -2.4996 2.9147 22 6 2.8644 -0.8138 3.3210 23 6 2.4606 -0.0346 2.3164 24 1 -0.3933 0.4417 0.7649 25 1 1.7924 -0.5138 -0.8900 26 1 1.5615 2.4679 -1.2086 27 1 1.5878 2.4586 1.2242 28 1 2.0541 -5.3144 0.3273 29 1 -1.3234 -5.9390 1.6528 30 1 0.0055 -6.8858 0.8535 31 1 0.6675 -11.1675 4.4613 32 1 0.5639 -11.2832 1.8407 33 1 0.2707 -8.8284 1.0701 34 1 2.2351 -6.6322 2.3512 35 1 1.8411 -5.5790 3.7784 36 1 3.3046 -0.4632 4.2427 37 1 2.5450 1.0418 2.3460 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_14772064_13652106.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:08:35 Heat of formation + Delta-G solvation = 24.258421 kcal Electronic energy + Delta-G solvation = -25468.346366 eV Core-core repulsion = 21661.297917 eV Total energy + Delta-G solvation = -3807.048449 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.054 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.07060 -40.19852 -40.03459 -38.36089 -37.27222 -37.04788 -34.52908 -33.42936 -31.45007 -30.42069 -28.10144 -26.78870 -25.88714 -24.35365 -22.70595 -21.82557 -21.77093 -20.78082 -20.06986 -19.81274 -18.92537 -18.68738 -18.01694 -17.31293 -16.75111 -16.54902 -16.43825 -16.01827 -15.89805 -15.80517 -15.30141 -14.99321 -14.70631 -14.31399 -14.23703 -13.99225 -13.96421 -13.72673 -13.60083 -13.50848 -13.35014 -13.25286 -12.78026 -12.52844 -12.36566 -12.15419 -12.05606 -11.77125 -11.61661 -11.02839 -10.99758 -10.79618 -10.63978 -10.39722 -9.61726 -9.33327 -4.98094 -0.82649 -0.65668 0.23288 0.67152 1.10999 1.14617 1.26383 1.53176 1.83060 1.90291 2.13940 2.22913 2.48087 3.19956 3.26959 3.34410 3.44811 3.52191 3.54331 3.75752 3.81137 3.99785 4.09095 4.19867 4.26980 4.30417 4.54254 4.60858 4.63970 4.67477 4.71956 4.82617 4.90304 4.90593 5.00503 5.08803 5.14325 5.35750 5.80368 5.88102 6.37284 6.49776 7.14908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.132 4.132 3 Si 0.798 3.202 4 C 0.001 3.999 5 C -0.797 4.797 6 S 2.722 3.278 7 O -0.963 6.963 8 O -0.985 6.985 9 N -1.093 6.093 10 C 0.120 3.880 11 H 0.126 0.874 12 C -0.146 4.146 13 C -0.025 4.025 14 H 0.128 0.872 15 C 0.213 3.787 16 N -0.530 5.530 17 C -0.062 4.062 18 C -0.045 4.045 19 N -0.558 5.558 20 C -0.124 4.124 21 S 0.239 5.761 22 C -0.152 4.152 23 C -0.176 4.176 24 H 0.391 0.609 25 H 0.110 0.890 26 H -0.296 1.296 27 H -0.250 1.250 28 H 0.432 0.568 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.177 0.823 32 H 0.207 0.793 33 H 0.431 0.569 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.211 0.789 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.429 0.111 3.402 5.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.343 6.343 2 C -0.241 4.241 3 Si 0.698 3.302 4 C -0.018 4.018 5 C -0.999 4.999 6 S 2.809 3.191 7 O -0.952 6.952 8 O -0.975 6.975 9 N -0.855 5.855 10 C 0.013 3.987 11 H 0.144 0.856 12 C -0.186 4.186 13 C -0.046 4.046 14 H 0.146 0.854 15 C -0.051 4.051 16 N -0.250 5.250 17 C -0.209 4.209 18 C -0.179 4.179 19 N -0.163 5.163 20 C -0.164 4.164 21 S 0.506 5.494 22 C -0.289 4.289 23 C -0.205 4.205 24 H 0.241 0.759 25 H 0.128 0.872 26 H -0.224 1.224 27 H -0.175 1.175 28 H 0.270 0.730 29 H 0.109 0.891 30 H 0.117 0.883 31 H 0.194 0.806 32 H 0.224 0.776 33 H 0.272 0.728 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.228 0.772 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 4.115 -0.182 3.764 5.580 hybrid contribution -0.931 0.474 -1.164 1.564 sum 3.184 0.293 2.600 4.121 Atomic orbital electron populations 1.86734 1.16719 1.80721 1.50098 1.25762 0.85089 1.15939 0.97285 0.93593 0.89592 0.68882 0.78118 1.19102 0.94326 0.91440 0.96892 1.35502 1.27866 1.14464 1.22089 1.00947 0.73289 0.72441 0.72389 1.93618 1.31395 1.84830 1.85397 1.93573 1.68036 1.86489 1.49409 1.55311 1.58351 1.29853 1.42012 1.22506 0.93280 0.97804 0.85128 0.85647 1.23607 1.01448 0.97101 0.96434 1.20866 0.99868 0.83743 1.00128 0.85423 1.23173 1.04703 0.95263 0.81977 1.70177 1.20895 1.03998 1.29925 1.22732 1.08949 0.94658 0.94591 1.23262 1.09448 0.88600 0.96639 1.43286 1.55428 1.07008 1.10611 1.23479 0.96172 0.96137 1.00609 1.83968 1.54782 1.06427 1.04262 1.26621 1.01934 0.96158 1.04178 1.20478 1.03950 1.03179 0.92868 0.75937 0.87234 1.22367 1.17475 0.72954 0.89108 0.88295 0.80621 0.77614 0.72837 0.88323 0.88243 0.77187 0.80748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -3.71 12.32 -148.36 -1.83 -5.54 16 2 C -0.13 -0.50 2.33 71.24 0.17 -0.33 16 3 Si 0.80 -1.64 30.47 68.60 2.09 0.45 16 4 C 0.00 0.00 5.13 -20.92 -0.11 -0.11 16 5 C -0.80 -1.63 6.46 66.72 0.43 -1.20 16 6 S 2.72 14.72 5.02 -56.49 -0.28 14.44 16 7 O -0.96 -11.40 17.22 -125.86 -2.17 -13.57 16 8 O -0.98 -11.18 17.48 -128.00 -2.24 -13.42 16 9 N -1.09 3.70 5.60 -167.19 -0.94 2.76 16 10 C 0.12 -0.66 3.52 45.51 0.16 -0.50 16 11 H 0.13 -0.80 7.83 -2.38 -0.02 -0.81 16 12 C -0.15 0.86 7.36 31.12 0.23 1.09 16 13 C -0.03 0.10 4.29 -11.01 -0.05 0.05 16 14 H 0.13 -0.56 8.14 -2.39 -0.02 -0.58 16 15 C 0.21 0.30 7.36 138.13 1.02 1.32 16 16 N -0.53 -4.12 11.25 -188.13 -2.12 -6.24 16 17 C -0.06 -0.26 11.87 83.52 0.99 0.73 16 18 C -0.05 0.07 12.04 83.08 1.00 1.07 16 19 N -0.56 1.59 5.94 -186.27 -1.11 0.49 16 20 C -0.12 0.86 7.41 31.12 0.23 1.09 16 21 S 0.24 -1.16 22.08 -56.49 -1.25 -2.41 16 22 C -0.15 1.06 11.23 66.72 0.75 1.80 16 23 C -0.18 0.73 8.74 21.22 0.19 0.92 16 24 H 0.39 -0.32 8.70 -74.06 -0.64 -0.97 16 25 H 0.11 0.68 7.23 -2.39 -0.02 0.67 16 26 H -0.30 -1.68 7.11 99.48 0.71 -0.97 16 27 H -0.25 0.63 6.80 99.48 0.68 1.31 16 28 H 0.43 -3.30 8.94 -96.75 -0.87 -4.16 16 29 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 30 H 0.10 -0.86 6.65 -2.39 -0.02 -0.87 16 31 H 0.18 0.18 8.06 -2.91 -0.02 0.16 16 32 H 0.21 -1.72 8.06 -2.91 -0.02 -1.75 16 33 H 0.43 -3.79 7.54 -92.71 -0.70 -4.49 16 34 H 0.10 -0.75 8.09 -2.39 -0.02 -0.77 16 35 H 0.10 -0.85 8.14 -2.39 -0.02 -0.87 16 36 H 0.21 -2.89 8.06 -2.91 -0.02 -2.91 16 37 H 0.18 -1.48 5.54 -2.91 -0.02 -1.50 16 Total: 0.00 -30.24 338.12 -5.87 -36.11 By element: Atomic # 1 Polarization: -17.96 SS G_CDS: -1.04 Total: -19.01 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 5.01 Total: 5.93 kcal Atomic # 7 Polarization: 1.17 SS G_CDS: -4.16 Total: -2.99 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -6.23 Total: -32.53 kcal Atomic # 14 Polarization: -1.64 SS G_CDS: 2.09 Total: 0.45 kcal Atomic # 16 Polarization: 13.56 SS G_CDS: -1.53 Total: 12.03 kcal Total: -30.24 -5.87 -36.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14772064_13652106.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.370 kcal (2) G-P(sol) polarization free energy of solvation -30.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds