Wall clock time and date at job start Mon Mar 8 2021 09:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86304 * 109.47349 * 2 1 4 4 C 1.50703 * 109.47055 * 240.00160 * 2 1 3 5 5 C 1.33391 * 125.20247 * 299.72460 * 4 2 1 6 6 C 1.38424 * 114.91765 * 179.86256 * 5 4 2 7 7 S 1.76203 * 122.53730 * 180.20123 * 6 5 4 8 8 O 1.42104 * 106.40298 * 23.80308 * 7 6 5 9 9 O 1.42093 * 106.40259 * 156.72498 * 7 6 5 10 10 N 1.65600 * 107.21666 * 270.26463 * 7 6 5 11 11 C 1.46502 * 119.99919 * 65.00070 * 10 7 6 12 12 H 1.09007 * 112.85243 * 346.19356 * 11 10 7 13 13 C 1.53775 * 113.61656 * 117.50389 * 11 10 7 14 14 C 1.53781 * 87.08429 * 139.97870 * 13 11 10 15 15 H 1.08998 * 113.61143 * 89.11369 * 14 13 11 16 16 C 1.50700 * 113.69432 * 220.00808 * 14 13 11 17 17 N 1.30496 * 125.65204 * 192.22984 * 16 14 13 18 18 C 1.34124 * 109.25664 * 179.89289 * 17 16 14 19 19 C 1.34665 * 108.01979 * 0.36863 * 18 17 16 20 20 N 1.35043 * 125.64559 * 12.53681 * 16 14 13 21 21 C 1.53781 * 113.61266 * 215.00145 * 11 10 7 22 22 C 1.33381 * 114.92298 * 0.42185 * 6 5 4 23 23 S 1.75881 * 125.20304 * 120.02525 * 4 2 1 24 24 H 0.96708 * 114.00101 * 59.99198 * 1 2 3 25 25 H 1.09002 * 109.46984 * 120.00249 * 2 1 3 26 26 H 1.48497 * 110.00028 * 298.68295 * 3 2 1 27 27 H 1.48501 * 109.99652 * 59.99990 * 3 2 1 28 28 H 1.07998 * 122.53584 * 0.02562 * 5 4 2 29 29 H 0.97000 * 120.00181 * 245.00255 * 10 7 6 30 30 H 1.08998 * 113.61412 * 254.52802 * 13 11 10 31 31 H 1.09001 * 113.61435 * 25.43334 * 13 11 10 32 32 H 1.08000 * 125.98914 * 180.10863 * 18 17 16 33 33 H 1.08003 * 126.59093 * 179.81439 * 19 18 17 34 34 H 0.97000 * 126.40051 * 359.97438 * 20 16 14 35 35 H 1.08997 * 113.61736 * 334.56300 * 21 11 10 36 36 H 1.08999 * 113.61711 * 105.38776 * 21 11 10 37 37 H 1.08004 * 125.20560 * 179.75755 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6781 -1.9827 -1.5411 6 6 2.2451 -2.4175 -2.7266 7 16 2.0354 -4.0592 -3.3313 8 8 0.8365 -4.5515 -2.7485 9 8 2.2503 -4.0005 -4.7347 10 7 3.2679 -4.9725 -2.7074 11 6 3.3532 -5.1986 -1.2624 12 1 2.7067 -4.5325 -0.6909 13 6 3.2253 -6.6777 -0.8617 14 6 4.3285 -6.4107 0.1758 15 1 3.9483 -6.0771 1.1413 16 6 5.3302 -7.5300 0.2964 17 7 6.2191 -7.6566 1.2434 18 6 6.9360 -8.7701 1.0313 19 6 6.4793 -9.3515 -0.0943 20 7 5.4606 -8.5652 -0.5610 21 6 4.7955 -5.2612 -0.7328 22 6 2.9660 -1.5011 -3.3743 23 16 2.9472 0.0091 -2.4729 24 1 -0.3934 0.4418 -0.7650 25 1 1.7923 -0.5139 0.8900 26 1 1.5879 2.4586 -1.2242 27 1 1.5615 2.4678 1.2085 28 1 1.0741 -2.6240 -0.9164 29 1 3.9334 -5.3578 -3.2986 30 1 2.2612 -6.9284 -0.4192 31 1 3.5242 -7.3706 -1.6483 32 1 7.7414 -9.1342 1.6518 33 1 6.8459 -10.2633 -0.5424 34 1 4.9313 -8.7222 -1.3586 35 1 5.5237 -5.5668 -1.4840 36 1 5.0996 -4.3678 -0.1874 37 1 3.4826 -1.6618 -4.3090 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_14772064_15065232.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:08:43 Heat of formation + Delta-G solvation = 23.975246 kcal Electronic energy + Delta-G solvation = -25023.298537 eV Core-core repulsion = 21216.237808 eV Total energy + Delta-G solvation = -3807.060729 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.054 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -43.09624 -40.27135 -39.58936 -38.26480 -37.70981 -36.91300 -34.54087 -33.42105 -31.91929 -30.45019 -27.32411 -26.98354 -25.95905 -25.01796 -22.73588 -21.78237 -21.51591 -21.01319 -20.35628 -19.34056 -19.07368 -18.53552 -17.96258 -17.71035 -17.17170 -16.64952 -16.49905 -16.06090 -15.85043 -15.56153 -15.08060 -14.99452 -14.71702 -14.41558 -14.29100 -14.19667 -14.04881 -13.87304 -13.74174 -13.63926 -13.20368 -13.09426 -12.98203 -12.50292 -12.39922 -12.27997 -12.21545 -11.90258 -11.63547 -10.97503 -10.95708 -10.93550 -10.68569 -10.30021 -9.92663 -9.34558 -5.22148 -0.82942 -0.54846 0.24155 0.50751 0.88268 1.06997 1.09959 1.41380 1.77580 1.91784 2.11848 2.18639 2.63829 3.09100 3.15018 3.18882 3.29068 3.38864 3.52554 3.59860 3.66515 3.75018 4.00623 4.10926 4.14550 4.33131 4.40378 4.47113 4.48225 4.50725 4.57828 4.69895 4.75140 4.81115 4.81900 4.98460 5.10736 5.20616 5.70334 5.80205 6.18383 6.36232 7.15270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.521 6.521 2 C -0.033 4.033 3 Si 0.651 3.349 4 C -0.225 4.225 5 C -0.048 4.048 6 C -0.688 4.688 7 S 2.706 3.294 8 O -0.946 6.946 9 O -0.956 6.956 10 N -1.102 6.102 11 C 0.132 3.868 12 H 0.122 0.878 13 C -0.149 4.149 14 C -0.025 4.025 15 H 0.126 0.874 16 C 0.220 3.780 17 N -0.486 5.486 18 C -0.027 4.027 19 C -0.056 4.056 20 N -0.566 5.566 21 C -0.131 4.131 22 C -0.083 4.083 23 S 0.162 5.838 24 H 0.379 0.621 25 H 0.131 0.869 26 H -0.240 1.240 27 H -0.232 1.232 28 H 0.157 0.843 29 H 0.420 0.580 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.171 0.829 33 H 0.178 0.822 34 H 0.417 0.583 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.108 0.521 -0.633 4.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.327 6.327 2 C -0.146 4.146 3 Si 0.549 3.451 4 C -0.343 4.343 5 C -0.076 4.076 6 C -0.788 4.788 7 S 2.793 3.207 8 O -0.935 6.935 9 O -0.946 6.946 10 N -0.860 5.860 11 C 0.024 3.976 12 H 0.139 0.861 13 C -0.190 4.190 14 C -0.046 4.046 15 H 0.144 0.856 16 C -0.045 4.045 17 N -0.205 5.205 18 C -0.175 4.175 19 C -0.190 4.190 20 N -0.170 5.170 21 C -0.172 4.172 22 C -0.222 4.222 23 S 0.426 5.574 24 H 0.227 0.773 25 H 0.148 0.852 26 H -0.164 1.164 27 H -0.155 1.155 28 H 0.175 0.825 29 H 0.255 0.745 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.188 0.812 33 H 0.195 0.805 34 H 0.256 0.744 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 3.960 2.863 -0.021 4.887 hybrid contribution -1.155 -1.963 -1.334 2.639 sum 2.806 0.900 -1.355 3.243 Atomic orbital electron populations 1.86648 1.16942 1.79847 1.49307 1.24413 0.84036 1.10075 0.96040 0.95344 0.91523 0.75023 0.83207 1.25036 1.07713 0.98803 1.02760 1.19625 0.98283 0.95291 0.94433 1.30016 1.14501 1.25925 1.08335 1.01725 0.73239 0.72828 0.72925 1.93626 1.43024 1.78114 1.78773 1.93618 1.85548 1.86844 1.28601 1.55566 1.48122 1.67301 1.15026 1.22260 0.98596 0.97276 0.79456 0.86051 1.23581 0.99993 0.97248 0.98133 1.20815 0.92285 0.91259 1.00206 0.85573 1.22846 0.99971 0.92229 0.89410 1.70242 1.07071 1.19142 1.24037 1.22416 1.02938 0.94156 0.97947 1.22822 0.95309 1.00503 1.00324 1.43272 1.29081 1.20887 1.23737 1.23463 0.96159 0.98886 0.98650 1.25915 0.98053 0.95995 1.02204 1.84446 1.46230 1.12765 1.13928 0.77291 0.85150 1.16412 1.15525 0.82508 0.74459 0.89001 0.89679 0.81177 0.80501 0.74430 0.89088 0.89282 0.79726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -0.10 12.86 -35.23 -0.45 -0.56 16 2 C -0.03 0.05 2.96 36.01 0.11 0.16 16 3 Si 0.65 -1.22 30.97 -169.99 -5.26 -6.49 16 4 C -0.23 0.24 5.72 -36.00 -0.21 0.04 16 5 C -0.05 0.02 9.47 -41.21 -0.39 -0.37 16 6 C -0.69 0.42 5.86 -41.21 -0.24 0.18 16 7 S 2.71 0.20 5.74 -107.50 -0.62 -0.42 16 8 O -0.95 -3.04 17.40 -57.17 -0.99 -4.03 16 9 O -0.96 -2.78 17.64 -57.17 -1.01 -3.79 16 10 N -1.10 3.50 5.79 -4.20 -0.02 3.48 16 11 C 0.13 -0.47 4.35 -67.12 -0.29 -0.76 16 12 H 0.12 -0.53 7.95 -51.93 -0.41 -0.95 16 13 C -0.15 0.50 7.36 -25.92 -0.19 0.31 16 14 C -0.02 0.06 4.29 -90.96 -0.39 -0.33 16 15 H 0.13 -0.32 8.14 -51.93 -0.42 -0.74 16 16 C 0.22 0.12 7.37 -155.42 -1.14 -1.03 16 17 N -0.49 -1.66 11.25 -10.82 -0.12 -1.78 16 18 C -0.03 -0.05 11.87 -17.82 -0.21 -0.26 16 19 C -0.06 0.03 12.04 -16.56 -0.20 -0.17 16 20 N -0.57 0.74 5.94 -10.23 -0.06 0.68 16 21 C -0.13 0.46 7.41 -25.92 -0.19 0.27 16 22 C -0.08 0.12 10.70 29.04 0.31 0.43 16 23 S 0.16 -0.30 20.58 -107.50 -2.21 -2.51 16 24 H 0.38 -0.92 8.70 45.56 0.40 -0.52 16 25 H 0.13 -0.36 7.96 -51.93 -0.41 -0.78 16 26 H -0.24 0.00 7.11 56.52 0.40 0.41 16 27 H -0.23 -0.23 7.11 56.52 0.40 0.17 16 28 H 0.16 -0.14 7.97 -52.49 -0.42 -0.56 16 29 H 0.42 -2.08 8.94 -34.47 -0.31 -2.39 16 30 H 0.09 -0.29 8.14 -51.93 -0.42 -0.72 16 31 H 0.08 -0.38 6.65 -51.93 -0.35 -0.72 16 32 H 0.17 -0.03 8.06 -52.49 -0.42 -0.45 16 33 H 0.18 -0.62 8.06 -52.48 -0.42 -1.04 16 34 H 0.42 -1.71 7.54 -40.82 -0.31 -2.01 16 35 H 0.09 -0.32 8.09 -51.93 -0.42 -0.74 16 36 H 0.09 -0.34 8.14 -51.93 -0.42 -0.76 16 37 H 0.19 -0.61 8.00 -52.48 -0.42 -1.03 16 LS Contribution 344.12 15.07 5.19 5.19 Total: 0.00 -12.00 344.12 -12.57 -24.58 By element: Atomic # 1 Polarization: -8.86 SS G_CDS: -3.96 Total: -12.82 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -3.04 Total: -1.53 kcal Atomic # 7 Polarization: 2.58 SS G_CDS: -0.21 Total: 2.37 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -2.46 Total: -8.37 kcal Atomic # 14 Polarization: -1.22 SS G_CDS: -5.26 Total: -6.49 kcal Atomic # 16 Polarization: -0.10 SS G_CDS: -2.83 Total: -2.93 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -12.00 -12.57 -24.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14772064_15065232.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.552 kcal (2) G-P(sol) polarization free energy of solvation -12.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds